Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 AC073539.2-201ENST00000597113 165 ntBASIC0.37□□□□□ -2.35
SCN3AQ9NY46 AL162424.1-201ENST00000602325 221 ntBASIC0.37□□□□□ -2.35
SCN3AQ9NY46 Z83818.1-201ENST00000603584 150 ntBASIC0.37□□□□□ -2.35
SCN3AQ9NY46 AL049777.1-201ENST00000622740 518 ntBASIC0.37□□□□□ -2.35
SCN3AQ9NY46 AL450472.1-202ENST00000637286 180 ntBASIC0.37□□□□□ -2.35
SCN3AQ9NY46 MTND4P5-201ENST00000435821 1374 ntBASIC0.37□□□□□ -2.35
SCN3AQ9NY46 RNU4-92P-201ENST00000363783 136 ntBASIC0.37□□□□□ -2.35
SCN3AQ9NY46 SNORD114-24-201ENST00000365029 72 ntBASIC0.37□□□□□ -2.35
SCN3AQ9NY46 RNU6-83P-201ENST00000384568 112 ntBASIC0.37□□□□□ -2.35
SCN3AQ9NY46 RPL22P17-201ENST00000438729 315 ntBASIC0.37□□□□□ -2.35
SCN3AQ9NY46 RPL39P39-201ENST00000455840 151 ntBASIC0.37□□□□□ -2.35
SCN3AQ9NY46 MTCO2P6-201ENST00000463134 685 ntBASIC0.37□□□□□ -2.35
SCN3AQ9NY46 MTCO3P7-201ENST00000510008 774 ntBASIC0.37□□□□□ -2.35
SCN3AQ9NY46 RNU6-1069P-201ENST00000516612 133 ntBASIC0.37□□□□□ -2.35
SCN3AQ9NY46 AC136628.3-201ENST00000521868 290 ntBASIC0.37□□□□□ -2.35
SCN3AQ9NY46 AC024995.1-201ENST00000523014 93 ntBASIC0.37□□□□□ -2.35
SCN3AQ9NY46 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC0.37□□□□□ -2.35
SCN3AQ9NY46 AL929325.1-201ENST00000603096 117 ntBASIC0.37□□□□□ -2.35
SCN3AQ9NY46 AC063943.3-201ENST00000615562 356 ntBASIC0.37□□□□□ -2.35
SCN3AQ9NY46 AC006386.1-201ENST00000619436 415 ntBASIC0.37□□□□□ -2.35
SCN3AQ9NY46 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.36□□□□□ -2.35
SCN3AQ9NY46 RNU6-108P-201ENST00000365558 107 ntBASIC0.36□□□□□ -2.35
SCN3AQ9NY46 EXOSC3P1-201ENST00000448649 500 ntBASIC0.36□□□□□ -2.35
SCN3AQ9NY46 PDCD5P2-201ENST00000507570 312 ntBASIC0.36□□□□□ -2.35
SCN3AQ9NY46 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC0.36□□□□□ -2.35
SCN3AQ9NY46 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC0.36□□□□□ -2.35
SCN3AQ9NY46 AC022616.6-201ENST00000520479 119 ntBASIC0.36□□□□□ -2.35
SCN3AQ9NY46 AC007834.2-201ENST00000536310 343 ntBASIC0.36□□□□□ -2.35
SCN3AQ9NY46 HMGN1P30-201ENST00000589286 268 ntBASIC0.36□□□□□ -2.35
SCN3AQ9NY46 BNIP3P40-201ENST00000596017 556 ntBASIC0.36□□□□□ -2.35
SCN3AQ9NY46 AC069431.2-201ENST00000604149 1099 ntBASIC0.36□□□□□ -2.35
SCN3AQ9NY46 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC0.36□□□□□ -2.35
SCN3AQ9NY46 AC008250.2-201ENST00000615261 205 ntBASIC0.36□□□□□ -2.35
SCN3AQ9NY46 MIR2909-201ENST00000617113 69 ntBASIC0.36□□□□□ -2.35
SCN3AQ9NY46 BX322639.1-202ENST00000423987 2213 ntBASIC0.36□□□□□ -2.35
SCN3AQ9NY46 AL356583.2-201ENST00000426536 280 ntBASIC0.35□□□□□ -2.35
SCN3AQ9NY46 AC011891.1-201ENST00000437088 432 ntTSL 3 BASIC0.35□□□□□ -2.35
SCN3AQ9NY46 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC0.35□□□□□ -2.35
SCN3AQ9NY46 AC036111.3-201ENST00000526389 112 ntBASIC0.35□□□□□ -2.35
SCN3AQ9NY46 AP003181.2-201ENST00000528941 181 ntBASIC0.35□□□□□ -2.35
SCN3AQ9NY46 AP002001.1-203ENST00000534002 267 ntBASIC0.35□□□□□ -2.35
SCN3AQ9NY46 AC018659.1-201ENST00000551083 169 ntBASIC0.35□□□□□ -2.35
SCN3AQ9NY46 MIR5695-201ENST00000579717 85 ntBASIC0.35□□□□□ -2.35
SCN3AQ9NY46 Z98751.3-201ENST00000604447 521 ntBASIC0.35□□□□□ -2.35
SCN3AQ9NY46 AC027807.2-201ENST00000616099 408 ntBASIC0.35□□□□□ -2.35
SCN3AQ9NY46 MESTIT1_1.1-201ENST00000618871 140 ntBASIC0.35□□□□□ -2.35
SCN3AQ9NY46 AL136221.1-201ENST00000621449 509 ntBASIC0.35□□□□□ -2.35
SCN3AQ9NY46 ELL2P3-201ENST00000457883 1602 ntBASIC0.35□□□□□ -2.35
SCN3AQ9NY46 MTND4P4-201ENST00000439033 1366 ntBASIC0.35□□□□□ -2.35
SCN3AQ9NY46 RNU6-39P-201ENST00000384344 107 ntBASIC0.35□□□□□ -2.35
SCN3AQ9NY46 RNU6-1026P-201ENST00000384465 108 ntBASIC0.35□□□□□ -2.35
SCN3AQ9NY46 SNORD89-201ENST00000390981 114 ntBASIC0.35□□□□□ -2.35
SCN3AQ9NY46 MRPL42P2-201ENST00000403169 426 ntBASIC0.35□□□□□ -2.35
SCN3AQ9NY46 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.35□□□□□ -2.35
SCN3AQ9NY46 AC011233.1-201ENST00000422812 283 ntBASIC0.35□□□□□ -2.35
SCN3AQ9NY46 MED13P1-201ENST00000428342 171 ntBASIC0.35□□□□□ -2.35
SCN3AQ9NY46 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.35□□□□□ -2.35
SCN3AQ9NY46 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC0.35□□□□□ -2.35
SCN3AQ9NY46 SNORA70.22-201ENST00000517160 124 ntBASIC0.35□□□□□ -2.35
SCN3AQ9NY46 SNORA59B-202ENST00000578183 701 ntBASIC0.35□□□□□ -2.35
SCN3AQ9NY46 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC0.35□□□□□ -2.35
SCN3AQ9NY46 AL158032.1-201ENST00000605401 106 ntBASIC0.35□□□□□ -2.35
SCN3AQ9NY46 Z99289.3-201ENST00000605586 594 ntBASIC0.35□□□□□ -2.35
SCN3AQ9NY46 AC064807.4-201ENST00000607201 407 ntBASIC0.35□□□□□ -2.35
SCN3AQ9NY46 SEPT14P17-201ENST00000617978 177 ntBASIC0.35□□□□□ -2.35
SCN3AQ9NY46 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC0.35□□□□□ -2.35
SCN3AQ9NY46 TTK-211ENST00000627129 240 ntTSL 5 BASIC0.35□□□□□ -2.35
SCN3AQ9NY46 AL445984.1-201ENST00000637834 659 ntBASIC0.35□□□□□ -2.35
SCN3AQ9NY46 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.34□□□□□ -2.35
SCN3AQ9NY46 RNU6-552P-201ENST00000362869 119 ntBASIC0.34□□□□□ -2.36
SCN3AQ9NY46 Y_RNA.178-201ENST00000363832 102 ntBASIC0.34□□□□□ -2.36
SCN3AQ9NY46 MIR518A1-201ENST00000385068 85 ntBASIC0.34□□□□□ -2.36
SCN3AQ9NY46 RNU6-1000P-201ENST00000391066 106 ntBASIC0.34□□□□□ -2.36
SCN3AQ9NY46 MIR891A-201ENST00000401237 79 ntBASIC0.34□□□□□ -2.36
SCN3AQ9NY46 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC0.34□□□□□ -2.36
SCN3AQ9NY46 AC010154.1-201ENST00000425857 269 ntBASIC0.34□□□□□ -2.36
SCN3AQ9NY46 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC0.34□□□□□ -2.36
SCN3AQ9NY46 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC0.34□□□□□ -2.36
SCN3AQ9NY46 RNU7-90P-201ENST00000459216 62 ntBASIC0.34□□□□□ -2.36
SCN3AQ9NY46 SNRPGP7-201ENST00000469016 106 ntBASIC0.34□□□□□ -2.36
SCN3AQ9NY46 AC079382.1-201ENST00000493346 557 ntBASIC0.34□□□□□ -2.36
SCN3AQ9NY46 AC079140.5-201ENST00000507882 310 ntBASIC0.34□□□□□ -2.36
SCN3AQ9NY46 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC0.34□□□□□ -2.36
SCN3AQ9NY46 AP003072.2-201ENST00000527756 676 ntBASIC0.34□□□□□ -2.36
SCN3AQ9NY46 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC0.34□□□□□ -2.36
SCN3AQ9NY46 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC0.34□□□□□ -2.36
SCN3AQ9NY46 MIR4753-201ENST00000585119 83 ntBASIC0.34□□□□□ -2.36
SCN3AQ9NY46 AC012557.2-201ENST00000605919 418 ntBASIC0.34□□□□□ -2.36
SCN3AQ9NY46 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC0.34□□□□□ -2.36
SCN3AQ9NY46 MTND4P16-201ENST00000466108 1367 ntBASIC0.34□□□□□ -2.36
SCN3AQ9NY46 SNORA32.2-201ENST00000384049 122 ntBASIC0.33□□□□□ -2.36
SCN3AQ9NY46 MIR10B-201ENST00000385011 110 ntBASIC0.33□□□□□ -2.36
SCN3AQ9NY46 MIR549A-201ENST00000385268 96 ntBASIC0.33□□□□□ -2.36
SCN3AQ9NY46 RNU2-8P-201ENST00000410727 190 ntBASIC0.33□□□□□ -2.36
SCN3AQ9NY46 AL590135.1-201ENST00000422215 156 ntBASIC0.33□□□□□ -2.36
SCN3AQ9NY46 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC0.33□□□□□ -2.36
SCN3AQ9NY46 AC019205.3-201ENST00000424573 156 ntBASIC0.33□□□□□ -2.36
SCN3AQ9NY46 AC244023.1-201ENST00000426884 112 ntBASIC0.33□□□□□ -2.36
SCN3AQ9NY46 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC0.33□□□□□ -2.36
SCN3AQ9NY46 USP9YP28-201ENST00000435142 589 ntBASIC0.33□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 319.1 ms