Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 SNORA31.5-201ENST00000516190 133 ntBASIC4.11□□□□□ -1.75
CCDC87Q9NVE4 AP005660.1-201ENST00000522972 293 ntBASIC4.11□□□□□ -1.75
CCDC87Q9NVE4 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC4.11□□□□□ -1.75
CCDC87Q9NVE4 MIR3162-201ENST00000581818 82 ntBASIC4.11□□□□□ -1.75
CCDC87Q9NVE4 AC011921.3-201ENST00000605540 361 ntBASIC4.11□□□□□ -1.75
CCDC87Q9NVE4 AC004467.1-201ENST00000615678 330 ntBASIC4.11□□□□□ -1.75
CCDC87Q9NVE4 MIR3674-201ENST00000636576 68 ntBASIC4.11□□□□□ -1.75
CCDC87Q9NVE4 AC017071.1-201ENST00000564407 2204 ntBASIC4.11□□□□□ -1.75
CCDC87Q9NVE4 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC4.11□□□□□ -1.75
CCDC87Q9NVE4 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
CCDC87Q9NVE4 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC4.1□□□□□ -1.75
CCDC87Q9NVE4 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CCDC87Q9NVE4 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CCDC87Q9NVE4 SNORA48.8-201ENST00000391324 134 ntBASIC4.1□□□□□ -1.75
CCDC87Q9NVE4 RNU2-54P-201ENST00000410299 190 ntBASIC4.1□□□□□ -1.75
CCDC87Q9NVE4 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC4.1□□□□□ -1.75
CCDC87Q9NVE4 RPS3P1-201ENST00000456781 192 ntBASIC4.1□□□□□ -1.75
CCDC87Q9NVE4 RNA5SP356-201ENST00000515972 94 ntBASIC4.1□□□□□ -1.75
CCDC87Q9NVE4 RPL21P9-201ENST00000556149 474 ntBASIC4.1□□□□□ -1.75
CCDC87Q9NVE4 uc_338.1-201ENST00000612113 180 ntBASIC4.1□□□□□ -1.75
CCDC87Q9NVE4 TCL6_2.1-201ENST00000615162 119 ntBASIC4.1□□□□□ -1.75
CCDC87Q9NVE4 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC4.1□□□□□ -1.75
CCDC87Q9NVE4 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
CCDC87Q9NVE4 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC4.1□□□□□ -1.75
CCDC87Q9NVE4 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
CCDC87Q9NVE4 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
CCDC87Q9NVE4 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
CCDC87Q9NVE4 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
CCDC87Q9NVE4 RNU6-1210P-201ENST00000363775 107 ntBASIC4.09□□□□□ -1.75
CCDC87Q9NVE4 U3.9-201ENST00000363823 204 ntBASIC4.09□□□□□ -1.75
CCDC87Q9NVE4 RPL23AP3-201ENST00000453844 468 ntBASIC4.09□□□□□ -1.75
CCDC87Q9NVE4 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC4.09□□□□□ -1.75
CCDC87Q9NVE4 RNU6-344P-201ENST00000516635 111 ntBASIC4.09□□□□□ -1.75
CCDC87Q9NVE4 AC107934.2-201ENST00000518653 310 ntBASIC4.09□□□□□ -1.75
CCDC87Q9NVE4 AC055872.1-201ENST00000570978 278 ntBASIC4.09□□□□□ -1.75
CCDC87Q9NVE4 U7.8-201ENST00000619968 63 ntBASIC4.09□□□□□ -1.75
CCDC87Q9NVE4 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC4.09□□□□□ -1.75
CCDC87Q9NVE4 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.76
CCDC87Q9NVE4 AC026241.1-201ENST00000517873 2142 ntBASIC4.09□□□□□ -1.76
CCDC87Q9NVE4 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
CCDC87Q9NVE4 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.76
CCDC87Q9NVE4 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC4.08□□□□□ -1.76
CCDC87Q9NVE4 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC4.08□□□□□ -1.76
CCDC87Q9NVE4 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
CCDC87Q9NVE4 RNA5SP432-201ENST00000362480 116 ntBASIC4.08□□□□□ -1.76
CCDC87Q9NVE4 Y_RNA.40-201ENST00000362645 93 ntBASIC4.08□□□□□ -1.76
CCDC87Q9NVE4 RNU6-655P-201ENST00000362858 107 ntBASIC4.08□□□□□ -1.76
CCDC87Q9NVE4 Y_RNA.101-201ENST00000363154 102 ntBASIC4.08□□□□□ -1.76
CCDC87Q9NVE4 RNU6-682P-201ENST00000363843 106 ntBASIC4.08□□□□□ -1.76
CCDC87Q9NVE4 Y_RNA.217-201ENST00000364214 105 ntBASIC4.08□□□□□ -1.76
CCDC87Q9NVE4 SNORA54-201ENST00000384281 123 ntBASIC4.08□□□□□ -1.76
CCDC87Q9NVE4 MIR186-201ENST00000384988 86 ntBASIC4.08□□□□□ -1.76
CCDC87Q9NVE4 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
CCDC87Q9NVE4 RNA5SP252-201ENST00000391131 119 ntBASIC4.08□□□□□ -1.76
CCDC87Q9NVE4 RNU6-1077P-201ENST00000410506 102 ntBASIC4.08□□□□□ -1.76
CCDC87Q9NVE4 COX6CP10-201ENST00000416832 224 ntBASIC4.08□□□□□ -1.76
CCDC87Q9NVE4 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC4.08□□□□□ -1.76
CCDC87Q9NVE4 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC4.08□□□□□ -1.76
CCDC87Q9NVE4 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC4.08□□□□□ -1.76
CCDC87Q9NVE4 Y_RNA.641-201ENST00000459414 105 ntBASIC4.08□□□□□ -1.76
CCDC87Q9NVE4 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC4.08□□□□□ -1.76
CCDC87Q9NVE4 AC087441.2-201ENST00000529141 262 ntBASIC4.08□□□□□ -1.76
CCDC87Q9NVE4 AC006380.1-201ENST00000603598 186 ntBASIC4.08□□□□□ -1.76
CCDC87Q9NVE4 AC005562.2-201ENST00000618264 111 ntBASIC4.08□□□□□ -1.76
CCDC87Q9NVE4 AC091932.3-201ENST00000624223 323 ntBASIC4.08□□□□□ -1.76
CCDC87Q9NVE4 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC4.08□□□□□ -1.76
CCDC87Q9NVE4 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
CCDC87Q9NVE4 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC87Q9NVE4 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC4.07□□□□□ -1.76
CCDC87Q9NVE4 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
CCDC87Q9NVE4 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC87Q9NVE4 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC4.07□□□□□ -1.76
CCDC87Q9NVE4 RNU4-15P-201ENST00000362613 141 ntBASIC4.07□□□□□ -1.76
CCDC87Q9NVE4 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC4.07□□□□□ -1.76
CCDC87Q9NVE4 RNU6-1264P-201ENST00000383891 107 ntBASIC4.07□□□□□ -1.76
CCDC87Q9NVE4 RNU1-57P-201ENST00000384491 166 ntBASIC4.07□□□□□ -1.76
CCDC87Q9NVE4 RNU6-651P-201ENST00000411040 105 ntBASIC4.07□□□□□ -1.76
CCDC87Q9NVE4 AL365496.1-201ENST00000426885 215 ntBASIC4.07□□□□□ -1.76
CCDC87Q9NVE4 AC091179.1-201ENST00000461606 579 ntBASIC4.07□□□□□ -1.76
CCDC87Q9NVE4 TRAPPC2P7-201ENST00000509650 231 ntBASIC4.07□□□□□ -1.76
CCDC87Q9NVE4 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC4.07□□□□□ -1.76
CCDC87Q9NVE4 RNU6-155P-201ENST00000516347 100 ntBASIC4.07□□□□□ -1.76
CCDC87Q9NVE4 SNORD11B-201ENST00000607707 90 ntBASIC4.07□□□□□ -1.76
CCDC87Q9NVE4 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC4.07□□□□□ -1.76
CCDC87Q9NVE4 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC4.07□□□□□ -1.76
CCDC87Q9NVE4 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC4.06□□□□□ -1.76
CCDC87Q9NVE4 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC87Q9NVE4 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC4.06□□□□□ -1.76
CCDC87Q9NVE4 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC4.06□□□□□ -1.76
CCDC87Q9NVE4 RNU1-105P-201ENST00000363470 161 ntBASIC4.06□□□□□ -1.76
CCDC87Q9NVE4 MIR549A-201ENST00000385268 96 ntBASIC4.06□□□□□ -1.76
CCDC87Q9NVE4 SNORA40.19-201ENST00000390846 128 ntBASIC4.06□□□□□ -1.76
CCDC87Q9NVE4 AL139095.1-201ENST00000404326 391 ntBASIC4.06□□□□□ -1.76
CCDC87Q9NVE4 Y_RNA.597-201ENST00000410463 100 ntBASIC4.06□□□□□ -1.76
CCDC87Q9NVE4 AC009963.1-201ENST00000417265 157 ntBASIC4.06□□□□□ -1.76
CCDC87Q9NVE4 AL139281.1-201ENST00000422120 335 ntBASIC4.06□□□□□ -1.76
CCDC87Q9NVE4 OOSP1P1-201ENST00000423265 274 ntBASIC4.06□□□□□ -1.76
CCDC87Q9NVE4 AC024067.1-201ENST00000426199 223 ntBASIC4.06□□□□□ -1.76
CCDC87Q9NVE4 RPL23AP70-201ENST00000483361 460 ntBASIC4.06□□□□□ -1.76
CCDC87Q9NVE4 RNU6-191P-201ENST00000516295 94 ntBASIC4.06□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 143.3 ms