Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 RPL23AP7-203ENST00000449021 469 ntBASIC1.83□□□□□ -2.12
LIME1Q9H400 AC107399.1-201ENST00000451226 265 ntBASIC1.83□□□□□ -2.12
LIME1Q9H400 snoU13.6-201ENST00000458785 104 ntBASIC1.83□□□□□ -2.12
LIME1Q9H400 SNORA4.4-201ENST00000515921 135 ntBASIC1.83□□□□□ -2.12
LIME1Q9H400 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC1.83□□□□□ -2.12
LIME1Q9H400 AC009127.3-201ENST00000570531 403 ntBASIC1.83□□□□□ -2.12
LIME1Q9H400 MIR4498-201ENST00000577599 66 ntBASIC1.83□□□□□ -2.12
LIME1Q9H400 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.83□□□□□ -2.12
LIME1Q9H400 B3GNTL1P2-201ENST00000603673 288 ntBASIC1.83□□□□□ -2.12
LIME1Q9H400 SNRPGP17-201ENST00000603780 214 ntBASIC1.83□□□□□ -2.12
LIME1Q9H400 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC1.83□□□□□ -2.12
LIME1Q9H400 MIR6128-201ENST00000615528 109 ntBASIC1.83□□□□□ -2.12
LIME1Q9H400 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC1.83□□□□□ -2.12
LIME1Q9H400 MIR1248-201ENST00000629190 106 ntBASIC1.83□□□□□ -2.12
LIME1Q9H400 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC1.83□□□□□ -2.12
LIME1Q9H400 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
LIME1Q9H400 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
LIME1Q9H400 SNORA72.1-201ENST00000363485 129 ntBASIC1.82□□□□□ -2.12
LIME1Q9H400 RNU6-1059P-201ENST00000363752 98 ntBASIC1.82□□□□□ -2.12
LIME1Q9H400 Y_RNA.474-201ENST00000384341 102 ntBASIC1.82□□□□□ -2.12
LIME1Q9H400 Y_RNA.482-201ENST00000384377 111 ntBASIC1.82□□□□□ -2.12
LIME1Q9H400 SNORA51.11-201ENST00000384442 131 ntBASIC1.82□□□□□ -2.12
LIME1Q9H400 SNORA17.3-201ENST00000391159 129 ntBASIC1.82□□□□□ -2.12
LIME1Q9H400 SNORA40.18-201ENST00000391200 128 ntBASIC1.82□□□□□ -2.12
LIME1Q9H400 MIR208B-201ENST00000401172 77 ntBASIC1.82□□□□□ -2.12
LIME1Q9H400 MIR1287-201ENST00000408492 90 ntBASIC1.82□□□□□ -2.12
LIME1Q9H400 SRIP3-201ENST00000413200 219 ntBASIC1.82□□□□□ -2.12
LIME1Q9H400 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC1.82□□□□□ -2.12
LIME1Q9H400 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC1.82□□□□□ -2.12
LIME1Q9H400 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC1.82□□□□□ -2.12
LIME1Q9H400 OR2AQ1P-201ENST00000451972 200 ntBASIC1.82□□□□□ -2.12
LIME1Q9H400 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC1.82□□□□□ -2.12
LIME1Q9H400 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC1.82□□□□□ -2.12
LIME1Q9H400 RNU6-717P-201ENST00000459076 104 ntBASIC1.82□□□□□ -2.12
LIME1Q9H400 AC087477.1-201ENST00000465747 340 ntBASIC1.82□□□□□ -2.12
LIME1Q9H400 RPL23AP75-201ENST00000491601 451 ntBASIC1.82□□□□□ -2.12
LIME1Q9H400 KRTAP13-6P-201ENST00000508999 371 ntBASIC1.82□□□□□ -2.12
LIME1Q9H400 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC1.82□□□□□ -2.12
LIME1Q9H400 SCARNA16.3-201ENST00000516595 184 ntBASIC1.82□□□□□ -2.12
LIME1Q9H400 RNU6-965P-201ENST00000516721 96 ntBASIC1.82□□□□□ -2.12
LIME1Q9H400 DEFB131C-201ENST00000528817 165 ntBASIC1.82□□□□□ -2.12
LIME1Q9H400 AC109446.1-201ENST00000566172 220 ntBASIC1.82□□□□□ -2.12
LIME1Q9H400 AC005668.1-201ENST00000571142 476 ntBASIC1.82□□□□□ -2.12
LIME1Q9H400 RPL17P51-201ENST00000605218 238 ntBASIC1.82□□□□□ -2.12
LIME1Q9H400 WT1-AS_8.1-201ENST00000615200 275 ntBASIC1.82□□□□□ -2.12
LIME1Q9H400 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC1.82□□□□□ -2.12
LIME1Q9H400 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC1.81□□□□□ -2.12
LIME1Q9H400 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC1.81□□□□□ -2.12
LIME1Q9H400 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC1.81□□□□□ -2.12
LIME1Q9H400 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC1.81□□□□□ -2.12
LIME1Q9H400 SNORD115-8-201ENST00000363856 82 ntBASIC1.81□□□□□ -2.12
LIME1Q9H400 RNA5SP160-201ENST00000364866 120 ntBASIC1.81□□□□□ -2.12
LIME1Q9H400 RNU4-9P-201ENST00000364951 139 ntBASIC1.81□□□□□ -2.12
LIME1Q9H400 SNORD115-38-201ENST00000365037 82 ntBASIC1.81□□□□□ -2.12
LIME1Q9H400 RNU6-234P-201ENST00000365229 104 ntBASIC1.81□□□□□ -2.12
LIME1Q9H400 RNU6-26P-201ENST00000383985 107 ntBASIC1.81□□□□□ -2.12
LIME1Q9H400 RNY3P14-201ENST00000384309 102 ntBASIC1.81□□□□□ -2.12
LIME1Q9H400 Y_RNA.490-201ENST00000384413 102 ntBASIC1.81□□□□□ -2.12
LIME1Q9H400 RNA5SP494-201ENST00000410653 129 ntBASIC1.81□□□□□ -2.12
LIME1Q9H400 RPL37P10-201ENST00000412884 288 ntBASIC1.81□□□□□ -2.12
LIME1Q9H400 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC1.81□□□□□ -2.12
LIME1Q9H400 TRBV25OR9-2-201ENST00000438417 374 ntBASIC1.81□□□□□ -2.12
LIME1Q9H400 PRELID3BP1-201ENST00000457142 540 ntBASIC1.81□□□□□ -2.12
LIME1Q9H400 AC007215.1-201ENST00000464893 276 ntBASIC1.81□□□□□ -2.12
LIME1Q9H400 AC090255.1-201ENST00000495779 349 ntBASIC1.81□□□□□ -2.12
LIME1Q9H400 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC1.81□□□□□ -2.12
LIME1Q9H400 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC1.81□□□□□ -2.12
LIME1Q9H400 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC1.81□□□□□ -2.12
LIME1Q9H400 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC1.81□□□□□ -2.12
LIME1Q9H400 UBE2V2P2-201ENST00000587677 504 ntBASIC1.81□□□□□ -2.12
LIME1Q9H400 AC010928.2-201ENST00000588017 287 ntBASIC1.81□□□□□ -2.12
LIME1Q9H400 AP000654.2-201ENST00000605633 586 ntBASIC1.81□□□□□ -2.12
LIME1Q9H400 Y_RNA.783-201ENST00000613546 102 ntBASIC1.81□□□□□ -2.12
LIME1Q9H400 AC137590.2-201ENST00000619709 240 ntBASIC1.81□□□□□ -2.12
LIME1Q9H400 ZNF299P-201ENST00000406845 1804 ntBASIC1.81□□□□□ -2.12
LIME1Q9H400 MTND4P12-201ENST00000498999 1377 ntBASIC1.81□□□□□ -2.12
LIME1Q9H400 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC1.81□□□□□ -2.12
LIME1Q9H400 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC1.81□□□□□ -2.12
LIME1Q9H400 RNU6-601P-201ENST00000384540 107 ntBASIC1.8□□□□□ -2.12
LIME1Q9H400 MIR583-201ENST00000384846 75 ntBASIC1.8□□□□□ -2.12
LIME1Q9H400 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC1.8□□□□□ -2.12
LIME1Q9H400 Y_RNA.594-201ENST00000410373 140 ntBASIC1.8□□□□□ -2.12
LIME1Q9H400 MTND4P18-201ENST00000447010 465 ntBASIC1.8□□□□□ -2.12
LIME1Q9H400 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC1.8□□□□□ -2.12
LIME1Q9H400 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC1.8□□□□□ -2.12
LIME1Q9H400 AL137159.1-201ENST00000452808 512 ntBASIC1.8□□□□□ -2.12
LIME1Q9H400 AC079804.2-201ENST00000490376 200 ntBASIC1.8□□□□□ -2.12
LIME1Q9H400 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC1.8□□□□□ -2.12
LIME1Q9H400 Y_RNA.670-201ENST00000516255 105 ntBASIC1.8□□□□□ -2.12
LIME1Q9H400 RNA5SP200-201ENST00000516360 103 ntBASIC1.8□□□□□ -2.12
LIME1Q9H400 SNORA31.25-201ENST00000517242 134 ntBASIC1.8□□□□□ -2.12
LIME1Q9H400 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC1.8□□□□□ -2.12
LIME1Q9H400 IGLV3-17-201ENST00000519099 244 ntBASIC1.8□□□□□ -2.12
LIME1Q9H400 AC105029.1-201ENST00000520250 669 ntBASIC1.8□□□□□ -2.12
LIME1Q9H400 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC1.8□□□□□ -2.12
LIME1Q9H400 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC1.8□□□□□ -2.12
LIME1Q9H400 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.8□□□□□ -2.12
LIME1Q9H400 AC005730.3-201ENST00000583067 366 ntBASIC1.8□□□□□ -2.12
LIME1Q9H400 AC022202.1-201ENST00000613515 211 ntBASIC1.8□□□□□ -2.12
LIME1Q9H400 MIR6132-201ENST00000622083 109 ntBASIC1.8□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 199 ms