Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC010598.1-201ENST00000510378 103 ntBASIC3.02□□□□□ -1.93
CCDC140Q96MF4 RNU6-1278P-201ENST00000516130 107 ntBASIC3.02□□□□□ -1.93
CCDC140Q96MF4 RNU6-255P-201ENST00000516957 105 ntBASIC3.02□□□□□ -1.93
CCDC140Q96MF4 AC025647.1-201ENST00000517879 253 ntBASIC3.02□□□□□ -1.93
CCDC140Q96MF4 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC3.02□□□□□ -1.93
CCDC140Q96MF4 MIR5047-201ENST00000579212 100 ntBASIC3.02□□□□□ -1.93
CCDC140Q96MF4 AC084757.4-201ENST00000616350 526 ntBASIC3.02□□□□□ -1.93
CCDC140Q96MF4 AC068647.2-201ENST00000637380 353 ntBASIC3.02□□□□□ -1.93
CCDC140Q96MF4 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC3.02□□□□□ -1.93
CCDC140Q96MF4 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.02□□□□□ -1.93
CCDC140Q96MF4 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
CCDC140Q96MF4 ANKRD36BP1-201ENST00000358576 1779 ntBASIC3.02□□□□□ -1.93
CCDC140Q96MF4 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC3.02□□□□□ -1.93
CCDC140Q96MF4 AC018555.1-201ENST00000567548 1980 ntBASIC3.01□□□□□ -1.93
CCDC140Q96MF4 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC3.01□□□□□ -1.93
CCDC140Q96MF4 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
CCDC140Q96MF4 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.01□□□□□ -1.93
CCDC140Q96MF4 SNORA27.1-201ENST00000362604 124 ntBASIC3.01□□□□□ -1.93
CCDC140Q96MF4 RNU6-899P-201ENST00000363947 107 ntBASIC3.01□□□□□ -1.93
CCDC140Q96MF4 RNA5SP125-201ENST00000364843 120 ntBASIC3.01□□□□□ -1.93
CCDC140Q96MF4 Y_RNA.361-201ENST00000365515 120 ntBASIC3.01□□□□□ -1.93
CCDC140Q96MF4 RNA5SP283-201ENST00000365604 119 ntBASIC3.01□□□□□ -1.93
CCDC140Q96MF4 Y_RNA.464-201ENST00000384282 110 ntBASIC3.01□□□□□ -1.93
CCDC140Q96MF4 MIR561-201ENST00000385216 97 ntBASIC3.01□□□□□ -1.93
CCDC140Q96MF4 RNU2-2P-201ENST00000410396 191 ntBASIC3.01□□□□□ -1.93
CCDC140Q96MF4 RNU4-61P-201ENST00000411243 107 ntBASIC3.01□□□□□ -1.93
CCDC140Q96MF4 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC3.01□□□□□ -1.93
CCDC140Q96MF4 RPL23AP7-203ENST00000449021 469 ntBASIC3.01□□□□□ -1.93
CCDC140Q96MF4 CENPBD1P1-201ENST00000464061 469 ntBASIC3.01□□□□□ -1.93
CCDC140Q96MF4 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC3.01□□□□□ -1.93
CCDC140Q96MF4 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC3.01□□□□□ -1.93
CCDC140Q96MF4 AC026784.1-201ENST00000507986 352 ntBASIC3.01□□□□□ -1.93
CCDC140Q96MF4 AC091826.1-201ENST00000514065 313 ntBASIC3.01□□□□□ -1.93
CCDC140Q96MF4 RNU6-1337P-201ENST00000516525 95 ntBASIC3.01□□□□□ -1.93
CCDC140Q96MF4 MRPS18CP4-201ENST00000535821 231 ntBASIC3.01□□□□□ -1.93
CCDC140Q96MF4 AC106785.1-201ENST00000565935 262 ntBASIC3.01□□□□□ -1.93
CCDC140Q96MF4 AL606490.9-201ENST00000603331 271 ntBASIC3.01□□□□□ -1.93
CCDC140Q96MF4 AL356280.1-201ENST00000603614 379 ntBASIC3.01□□□□□ -1.93
CCDC140Q96MF4 RNU2-4P-201ENST00000606190 192 ntBASIC3.01□□□□□ -1.93
CCDC140Q96MF4 AC104465.1-201ENST00000611365 139 ntBASIC3.01□□□□□ -1.93
CCDC140Q96MF4 U2.15-201ENST00000611544 191 ntBASIC3.01□□□□□ -1.93
CCDC140Q96MF4 U2.16-201ENST00000613119 191 ntBASIC3.01□□□□□ -1.93
CCDC140Q96MF4 U2.12-201ENST00000613778 191 ntBASIC3.01□□□□□ -1.93
CCDC140Q96MF4 U2.9-201ENST00000615427 191 ntBASIC3.01□□□□□ -1.93
CCDC140Q96MF4 AL078604.3-201ENST00000615580 211 ntBASIC3.01□□□□□ -1.93
CCDC140Q96MF4 U2.11-201ENST00000616345 191 ntBASIC3.01□□□□□ -1.93
CCDC140Q96MF4 U2.2-201ENST00000616535 191 ntBASIC3.01□□□□□ -1.93
CCDC140Q96MF4 U2.3-201ENST00000617785 191 ntBASIC3.01□□□□□ -1.93
CCDC140Q96MF4 U2.19-201ENST00000618602 191 ntBASIC3.01□□□□□ -1.93
CCDC140Q96MF4 RNU2-1-201ENST00000618664 191 ntBASIC3.01□□□□□ -1.93
CCDC140Q96MF4 U2.6-201ENST00000619225 191 ntBASIC3.01□□□□□ -1.93
CCDC140Q96MF4 U2.5-201ENST00000619465 191 ntBASIC3.01□□□□□ -1.93
CCDC140Q96MF4 U2.10-201ENST00000620268 191 ntBASIC3.01□□□□□ -1.93
CCDC140Q96MF4 RNA5SP196-201ENST00000625967 102 ntBASIC3.01□□□□□ -1.93
CCDC140Q96MF4 U6.106-201ENST00000636360 105 ntBASIC3.01□□□□□ -1.93
CCDC140Q96MF4 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC3.01□□□□□ -1.93
CCDC140Q96MF4 AC068700.1-201ENST00000565862 3754 ntBASIC3.01□□□□□ -1.93
CCDC140Q96MF4 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.01□□□□□ -1.93
CCDC140Q96MF4 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC3.01□□□□□ -1.93
CCDC140Q96MF4 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
CCDC140Q96MF4 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3□□□□□ -1.93
CCDC140Q96MF4 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
CCDC140Q96MF4 AL513302.2-201ENST00000562313 1842 ntBASIC3□□□□□ -1.93
CCDC140Q96MF4 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3□□□□□ -1.93
CCDC140Q96MF4 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3□□□□□ -1.93
CCDC140Q96MF4 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
CCDC140Q96MF4 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC3□□□□□ -1.93
CCDC140Q96MF4 AL356292.1-201ENST00000283110 373 ntBASIC3□□□□□ -1.93
CCDC140Q96MF4 Y_RNA.8-201ENST00000362353 102 ntBASIC3□□□□□ -1.93
CCDC140Q96MF4 RNA5SP97-201ENST00000365006 84 ntBASIC3□□□□□ -1.93
CCDC140Q96MF4 Y_RNA.571-201ENST00000384753 98 ntBASIC3□□□□□ -1.93
CCDC140Q96MF4 SNORA48.7-201ENST00000391302 135 ntBASIC3□□□□□ -1.93
CCDC140Q96MF4 AC002075.2-201ENST00000425207 252 ntBASIC3□□□□□ -1.93
CCDC140Q96MF4 AL500522.2-201ENST00000448562 343 ntBASIC3□□□□□ -1.93
CCDC140Q96MF4 AL137159.1-201ENST00000452808 512 ntBASIC3□□□□□ -1.93
CCDC140Q96MF4 AC006539.3-201ENST00000454258 129 ntBASIC3□□□□□ -1.93
CCDC140Q96MF4 AC010531.2-201ENST00000465012 153 ntBASIC3□□□□□ -1.93
CCDC140Q96MF4 AC010409.1-201ENST00000487382 476 ntBASIC3□□□□□ -1.93
CCDC140Q96MF4 RNA5SP20-201ENST00000515976 84 ntBASIC3□□□□□ -1.93
CCDC140Q96MF4 SNORA48.11-201ENST00000517015 89 ntBASIC3□□□□□ -1.93
CCDC140Q96MF4 AC021269.2-201ENST00000532318 330 ntBASIC3□□□□□ -1.93
CCDC140Q96MF4 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC3□□□□□ -1.93
CCDC140Q96MF4 AC090877.1-201ENST00000561418 344 ntBASIC3□□□□□ -1.93
CCDC140Q96MF4 MIR4727-201ENST00000622232 55 ntBASIC3□□□□□ -1.93
CCDC140Q96MF4 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC3□□□□□ -1.93
CCDC140Q96MF4 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC3□□□□□ -1.93
CCDC140Q96MF4 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC3□□□□□ -1.93
CCDC140Q96MF4 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC3□□□□□ -1.93
CCDC140Q96MF4 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
CCDC140Q96MF4 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
CCDC140Q96MF4 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
CCDC140Q96MF4 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
CCDC140Q96MF4 Y_RNA.7-201ENST00000362352 102 ntBASIC2.99□□□□□ -1.93
CCDC140Q96MF4 Y_RNA.24-201ENST00000362508 103 ntBASIC2.99□□□□□ -1.93
CCDC140Q96MF4 RNU6-283P-201ENST00000364788 107 ntBASIC2.99□□□□□ -1.93
CCDC140Q96MF4 U8.7-201ENST00000364940 136 ntBASIC2.99□□□□□ -1.93
CCDC140Q96MF4 RNU6-1240P-201ENST00000365155 104 ntBASIC2.99□□□□□ -1.93
CCDC140Q96MF4 RNU6-1235P-201ENST00000384559 107 ntBASIC2.99□□□□□ -1.93
CCDC140Q96MF4 RNU6-136P-201ENST00000384663 107 ntBASIC2.99□□□□□ -1.93
CCDC140Q96MF4 Y_RNA.572-201ENST00000384757 98 ntBASIC2.99□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 121.3 ms