| MTERF3 | Q96E29 | MIR4795-201 | ENST00000584182 | 89 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | MIR5701-1-201 | ENST00000585138 | 82 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | AC012594.1-269 | ENST00000600489 | 628 nt | TSL 5 BASIC | 2.12 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | MIR5701-2-201 | ENST00000615634 | 82 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | ST7-OT4_2.1-201 | ENST00000619089 | 172 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | ZNF658B-202 | ENST00000615961 | 3375 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | RNU6-874P-201 | ENST00000362390 | 105 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | RNY1P16-201 | ENST00000363063 | 111 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | Y_RNA.259-201 | ENST00000364619 | 101 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | Y_RNA.384-201 | ENST00000383909 | 102 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | SNORA67.4-201 | ENST00000384688 | 142 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | RNY4P36-201 | ENST00000391116 | 96 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | NDUFB4P4-201 | ENST00000404822 | 243 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | MIR1262-201 | ENST00000408276 | 93 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | AC097473.1-201 | ENST00000508142 | 408 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | AP003123.1-201 | ENST00000526041 | 333 nt | TSL 2 BASIC | 2.11 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | AP003171.1-201 | ENST00000532770 | 266 nt | TSL 2 BASIC | 2.11 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | AP001825.1-201 | ENST00000534275 | 351 nt | TSL 2 BASIC | 2.11 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | AC027288.2-201 | ENST00000553028 | 243 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | AC074050.1-201 | ENST00000563247 | 211 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | AL355802.3-201 | ENST00000607571 | 545 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | ZEB2_AS1_1.1-201 | ENST00000621504 | 128 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | MIR6132-201 | ENST00000622083 | 109 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | FGF7-202 | ENST00000560270 | 1688 nt | TSL 1 (best) BASIC | 2.11 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | MDM2-206 | ENST00000350057 | 1401 nt | TSL 1 (best) BASIC | 2.1 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | RNU6-1159P-201 | ENST00000362933 | 107 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | RNU6-17P-201 | ENST00000384245 | 107 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | RNU6-611P-201 | ENST00000384276 | 104 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | RNU6-18P-201 | ENST00000384527 | 107 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | TRAV34-201 | ENST00000390461 | 349 nt | APPRIS P1 BASIC | 2.1 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | EDDM3CP-201 | ENST00000415977 | 425 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | AL356010.2-201 | ENST00000422844 | 197 nt | TSL 3 BASIC | 2.1 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | RPL23AP50-201 | ENST00000434149 | 455 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | AC008154.1-201 | ENST00000453087 | 327 nt | TSL 3 BASIC | 2.1 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | AC005703.2-201 | ENST00000453339 | 343 nt | TSL 2 BASIC | 2.1 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | LINC01203-202 | ENST00000456091 | 476 nt | TSL 3 BASIC | 2.1 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | PRELID3BP1-201 | ENST00000457142 | 540 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | RN7SKP210-201 | ENST00000459176 | 261 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | PTP4A1-204 | ENST00000578299 | 135 nt | TSL 2 BASIC | 2.1 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | MIR5690-201 | ENST00000583739 | 73 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | LUZP6-201 | ENST00000589735 | 177 nt | APPRIS P1 BASIC | 2.1 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | LINC01206-214 | ENST00000610910 | 456 nt | TSL 5 BASIC | 2.1 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | RMST_6.1-201 | ENST00000611980 | 203 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | AC084781.2-201 | ENST00000615568 | 161 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | AL359697.1-201 | ENST00000624879 | 587 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | ZNF204P-201 | ENST00000416749 | 2397 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | RNU6-222P-201 | ENST00000362438 | 107 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | RNU1-76P-201 | ENST00000362903 | 159 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | Y_RNA.319-201 | ENST00000365138 | 92 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | MIR153-2-201 | ENST00000385225 | 87 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | SNORA75.6-201 | ENST00000391318 | 127 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | MTCYBP4-201 | ENST00000401524 | 249 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | U3.40-201 | ENST00000408706 | 208 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | MTND3P23-201 | ENST00000431980 | 347 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | AL035666.1-201 | ENST00000446195 | 348 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | HMGN2P18-201 | ENST00000450680 | 270 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | MTCO3P8-201 | ENST00000453691 | 755 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | SPAG11B-206 | ENST00000458665 | 444 nt | TSL 5 BASIC | 2.09 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | Y_RNA.653-201 | ENST00000459091 | 95 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | SNORD19B-201 | ENST00000459623 | 84 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | AC007215.1-201 | ENST00000464893 | 276 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | RPS27P21-201 | ENST00000486977 | 252 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | AC093259.1-201 | ENST00000509755 | 300 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | AC096721.1-201 | ENST00000513540 | 552 nt | TSL 4 BASIC | 2.09 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | Y_RNA.675-201 | ENST00000516389 | 149 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | RNU5F-4P-201 | ENST00000516581 | 114 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | RNU6-58P-201 | ENST00000517143 | 103 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | AC108449.1-202 | ENST00000517632 | 478 nt | TSL 3 BASIC | 2.09 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | UBL5P4-201 | ENST00000562584 | 236 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | AC104581.2-201 | ENST00000572227 | 430 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | MIR3126-201 | ENST00000577443 | 74 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | DLEU1_1.1-201 | ENST00000618107 | 190 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | AC005562.2-201 | ENST00000618264 | 111 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | AC137590.2-201 | ENST00000619709 | 240 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | AC243829.7-201 | ENST00000633081 | 225 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | C1orf141-205 | ENST00000475209 | 2079 nt | APPRIS ALT2 TSL 5 BASIC | 2.09 | □□□□□ -2.07 | | |
| MTERF3 | Q96E29 | PCDH11Y-203 | ENST00000362095 | 4220 nt | APPRIS ALT2 TSL 1 (best) BASIC | 2.09 | □□□□□ -2.08 | | |
| MTERF3 | Q96E29 | ATF1-201 | ENST00000262053 | 2181 nt | APPRIS P1 TSL 1 (best) BASIC | 2.09 | □□□□□ -2.08 | | |
| MTERF3 | Q96E29 | WWP1-201 | ENST00000265428 | 3362 nt | APPRIS P1 TSL 1 (best) BASIC | 2.08 | □□□□□ -2.08 | | |
| MTERF3 | Q96E29 | RNU4-79P-201 | ENST00000362764 | 141 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| MTERF3 | Q96E29 | SNORA51.11-201 | ENST00000384442 | 131 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| MTERF3 | Q96E29 | MIR221-201 | ENST00000385135 | 110 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| MTERF3 | Q96E29 | MT-TD-201 | ENST00000387419 | 68 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| MTERF3 | Q96E29 | KCNMA1-AS2-201 | ENST00000428936 | 427 nt | TSL 3 BASIC | 2.08 | □□□□□ -2.08 | | |
| MTERF3 | Q96E29 | AL353743.2-202 | ENST00000439544 | 473 nt | TSL 3 BASIC | 2.08 | □□□□□ -2.08 | | |
| MTERF3 | Q96E29 | AC004386.2-201 | ENST00000441858 | 148 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| MTERF3 | Q96E29 | AP000870.1-201 | ENST00000472927 | 406 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| MTERF3 | Q96E29 | AC090255.1-201 | ENST00000495779 | 349 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| MTERF3 | Q96E29 | AC022493.2-201 | ENST00000506122 | 481 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| MTERF3 | Q96E29 | RNU7-175P-201 | ENST00000515915 | 61 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| MTERF3 | Q96E29 | RNA5SP281-201 | ENST00000516504 | 135 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| MTERF3 | Q96E29 | RNA5SP490-201 | ENST00000517141 | 136 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| MTERF3 | Q96E29 | AC025871.1-202 | ENST00000518819 | 432 nt | TSL 3 BASIC | 2.08 | □□□□□ -2.08 | | |
| MTERF3 | Q96E29 | LINC02293-201 | ENST00000548335 | 574 nt | TSL 5 BASIC | 2.08 | □□□□□ -2.08 | | |
| MTERF3 | Q96E29 | SNRPGP18-201 | ENST00000553000 | 214 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| MTERF3 | Q96E29 | AC005899.2-201 | ENST00000584353 | 90 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| MTERF3 | Q96E29 | C8orf59P2-201 | ENST00000603441 | 271 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| MTERF3 | Q96E29 | AC025754.2-201 | ENST00000606491 | 432 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| MTERF3 | Q96E29 | TEX41-243 | ENST00000614173 | 190 nt | TSL 5 BASIC | 2.08 | □□□□□ -2.08 | | |
| MTERF3 | Q96E29 | AL136360.1-201 | ENST00000503377 | 1900 nt | BASIC | 2.08 | □□□□□ -2.08 | | |