Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC2.22□□□□□ -2.05
SKA1Q96BD8 SCARNA4-201ENST00000629045 128 ntBASIC2.22□□□□□ -2.05
SKA1Q96BD8 AC068137.4-201ENST00000638485 296 ntBASIC2.22□□□□□ -2.05
SKA1Q96BD8 MIR340-201ENST00000362125 95 ntBASIC2.21□□□□□ -2.06
SKA1Q96BD8 SNORD50.1-201ENST00000362987 71 ntBASIC2.21□□□□□ -2.06
SKA1Q96BD8 RNU4-9P-201ENST00000364951 139 ntBASIC2.21□□□□□ -2.06
SKA1Q96BD8 RNU6-482P-201ENST00000391068 107 ntBASIC2.21□□□□□ -2.06
SKA1Q96BD8 MIR1283-1-201ENST00000408494 87 ntBASIC2.21□□□□□ -2.06
SKA1Q96BD8 AL591806.2-201ENST00000433122 173 ntBASIC2.21□□□□□ -2.06
SKA1Q96BD8 MTCO1P44-201ENST00000441935 243 ntBASIC2.21□□□□□ -2.06
SKA1Q96BD8 AL357134.1-201ENST00000445848 426 ntBASIC2.21□□□□□ -2.06
SKA1Q96BD8 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC2.21□□□□□ -2.06
SKA1Q96BD8 AC009237.7-201ENST00000447357 229 ntBASIC2.21□□□□□ -2.06
SKA1Q96BD8 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC2.21□□□□□ -2.06
SKA1Q96BD8 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC2.21□□□□□ -2.06
SKA1Q96BD8 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC2.21□□□□□ -2.06
SKA1Q96BD8 AC114982.1-201ENST00000469402 321 ntBASIC2.21□□□□□ -2.06
SKA1Q96BD8 AC092989.1-201ENST00000481235 277 ntBASIC2.21□□□□□ -2.06
SKA1Q96BD8 RNU6-864P-201ENST00000516256 108 ntBASIC2.21□□□□□ -2.06
SKA1Q96BD8 RNVU1-2-201ENST00000516326 135 ntBASIC2.21□□□□□ -2.06
SKA1Q96BD8 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC2.21□□□□□ -2.06
SKA1Q96BD8 DEFB131C-201ENST00000528817 165 ntBASIC2.21□□□□□ -2.06
SKA1Q96BD8 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC2.21□□□□□ -2.06
SKA1Q96BD8 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC2.21□□□□□ -2.06
SKA1Q96BD8 AC015712.3-201ENST00000559380 164 ntBASIC2.21□□□□□ -2.06
SKA1Q96BD8 MIR5002-201ENST00000584713 97 ntBASIC2.21□□□□□ -2.06
SKA1Q96BD8 AC098657.3-201ENST00000620434 263 ntBASIC2.21□□□□□ -2.06
SKA1Q96BD8 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC2.21□□□□□ -2.06
SKA1Q96BD8 AC073869.6-201ENST00000640656 341 ntBASIC2.21□□□□□ -2.06
SKA1Q96BD8 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.21□□□□□ -2.06
SKA1Q96BD8 CENPCP1-201ENST00000533085 2578 ntBASIC2.2□□□□□ -2.06
SKA1Q96BD8 RNU6-545P-201ENST00000362681 104 ntBASIC2.2□□□□□ -2.06
SKA1Q96BD8 MIR548F1-201ENST00000408667 84 ntBASIC2.2□□□□□ -2.06
SKA1Q96BD8 RN7SKP32-201ENST00000410167 303 ntBASIC2.2□□□□□ -2.06
SKA1Q96BD8 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC2.2□□□□□ -2.06
SKA1Q96BD8 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC2.2□□□□□ -2.06
SKA1Q96BD8 AC074290.1-201ENST00000448883 135 ntBASIC2.2□□□□□ -2.06
SKA1Q96BD8 AC079354.2-201ENST00000453523 154 ntBASIC2.2□□□□□ -2.06
SKA1Q96BD8 AC010531.2-201ENST00000465012 153 ntBASIC2.2□□□□□ -2.06
SKA1Q96BD8 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC2.2□□□□□ -2.06
SKA1Q96BD8 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC2.2□□□□□ -2.06
SKA1Q96BD8 AC097473.1-201ENST00000508142 408 ntBASIC2.2□□□□□ -2.06
SKA1Q96BD8 RNU6-718P-201ENST00000516166 105 ntBASIC2.2□□□□□ -2.06
SKA1Q96BD8 RNU2-34P-201ENST00000516534 121 ntBASIC2.2□□□□□ -2.06
SKA1Q96BD8 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC2.2□□□□□ -2.06
SKA1Q96BD8 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC2.2□□□□□ -2.06
SKA1Q96BD8 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC2.2□□□□□ -2.06
SKA1Q96BD8 AC022254.1-201ENST00000567857 235 ntBASIC2.2□□□□□ -2.06
SKA1Q96BD8 MIR3942-201ENST00000585264 109 ntBASIC2.2□□□□□ -2.06
SKA1Q96BD8 AC009318.2-201ENST00000610917 651 ntBASIC2.2□□□□□ -2.06
SKA1Q96BD8 AC083806.3-201ENST00000614016 455 ntBASIC2.2□□□□□ -2.06
SKA1Q96BD8 MPP6-209ENST00000625307 126 ntTSL 5 BASIC2.2□□□□□ -2.06
SKA1Q96BD8 AL159152.1-201ENST00000635019 2587 ntBASIC2.2□□□□□ -2.06
SKA1Q96BD8 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.2□□□□□ -2.06
SKA1Q96BD8 SNORA48.3-201ENST00000391081 134 ntBASIC2.19□□□□□ -2.06
SKA1Q96BD8 MIR1289-2-201ENST00000408360 111 ntBASIC2.19□□□□□ -2.06
SKA1Q96BD8 MIR1277-201ENST00000408536 78 ntBASIC2.19□□□□□ -2.06
SKA1Q96BD8 AL358453.1-201ENST00000422522 250 ntBASIC2.19□□□□□ -2.06
SKA1Q96BD8 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC2.19□□□□□ -2.06
SKA1Q96BD8 RPL23AP7-203ENST00000449021 469 ntBASIC2.19□□□□□ -2.06
SKA1Q96BD8 RPS29P25-201ENST00000481709 171 ntBASIC2.19□□□□□ -2.06
SKA1Q96BD8 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC2.19□□□□□ -2.06
SKA1Q96BD8 RNU6-1198P-201ENST00000516904 67 ntBASIC2.19□□□□□ -2.06
SKA1Q96BD8 RNU6-273P-201ENST00000516937 96 ntBASIC2.19□□□□□ -2.06
SKA1Q96BD8 RNA5SP54-201ENST00000516951 92 ntBASIC2.19□□□□□ -2.06
SKA1Q96BD8 7SK.7-201ENST00000603504 247 ntBASIC2.19□□□□□ -2.06
SKA1Q96BD8 BNIP3P10-201ENST00000605360 577 ntBASIC2.19□□□□□ -2.06
SKA1Q96BD8 AC009831.4-201ENST00000620744 325 ntBASIC2.19□□□□□ -2.06
SKA1Q96BD8 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
SKA1Q96BD8 BX322639.1-202ENST00000423987 2213 ntBASIC2.19□□□□□ -2.06
SKA1Q96BD8 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.19□□□□□ -2.06
SKA1Q96BD8 MTND5P9-201ENST00000503854 1755 ntBASIC2.18□□□□□ -2.06
SKA1Q96BD8 RNA5SP138-201ENST00000365098 114 ntBASIC2.18□□□□□ -2.06
SKA1Q96BD8 RNA5SP489-201ENST00000410986 109 ntBASIC2.18□□□□□ -2.06
SKA1Q96BD8 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC2.18□□□□□ -2.06
SKA1Q96BD8 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
SKA1Q96BD8 ATP5J2P3-201ENST00000451550 258 ntBASIC2.18□□□□□ -2.06
SKA1Q96BD8 MTCO3P8-201ENST00000453691 755 ntBASIC2.18□□□□□ -2.06
SKA1Q96BD8 AC067942.3-201ENST00000512025 362 ntBASIC2.18□□□□□ -2.06
SKA1Q96BD8 GNAI2P1-201ENST00000541815 315 ntBASIC2.18□□□□□ -2.06
SKA1Q96BD8 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC2.18□□□□□ -2.06
SKA1Q96BD8 AC006504.8-201ENST00000621046 635 ntBASIC2.18□□□□□ -2.06
SKA1Q96BD8 ZNF72P-201ENST00000425869 1908 ntBASIC2.17□□□□□ -2.06
SKA1Q96BD8 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC2.17□□□□□ -2.06
SKA1Q96BD8 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
SKA1Q96BD8 RNA5SP100-201ENST00000410903 110 ntBASIC2.17□□□□□ -2.06
SKA1Q96BD8 RNA5SP59-201ENST00000410922 110 ntBASIC2.17□□□□□ -2.06
SKA1Q96BD8 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC2.17□□□□□ -2.06
SKA1Q96BD8 NFU1P2-201ENST00000448700 469 ntBASIC2.17□□□□□ -2.06
SKA1Q96BD8 AL021397.1-201ENST00000451806 248 ntBASIC2.17□□□□□ -2.06
SKA1Q96BD8 AC112492.4-201ENST00000456549 352 ntBASIC2.17□□□□□ -2.06
SKA1Q96BD8 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC2.17□□□□□ -2.06
SKA1Q96BD8 5S_rRNA.3-201ENST00000517021 110 ntBASIC2.17□□□□□ -2.06
SKA1Q96BD8 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC2.17□□□□□ -2.06
SKA1Q96BD8 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC2.17□□□□□ -2.06
SKA1Q96BD8 RRN3P3-201ENST00000549207 578 ntBASIC2.17□□□□□ -2.06
SKA1Q96BD8 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC2.17□□□□□ -2.06
SKA1Q96BD8 AC068790.6-201ENST00000602558 258 ntBASIC2.17□□□□□ -2.06
SKA1Q96BD8 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC2.17□□□□□ -2.06
SKA1Q96BD8 5S_rRNA.19-201ENST00000612131 110 ntBASIC2.17□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 121.2 ms