Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 BNIP3P19-201ENST00000605397 577 ntBASIC-0.98□□□□□ -2.57
LINC00643Q86TS7 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC-0.98□□□□□ -2.57
LINC00643Q86TS7 RNU6-216P-201ENST00000363282 104 ntBASIC-0.99□□□□□ -2.57
LINC00643Q86TS7 Y_RNA.287-201ENST00000364853 94 ntBASIC-0.99□□□□□ -2.57
LINC00643Q86TS7 Y_RNA.338-201ENST00000365320 114 ntBASIC-0.99□□□□□ -2.57
LINC00643Q86TS7 MIR544A-201ENST00000384855 91 ntBASIC-0.99□□□□□ -2.57
LINC00643Q86TS7 RPL17P50-201ENST00000396131 546 ntBASIC-0.99□□□□□ -2.57
LINC00643Q86TS7 AC006366.1-201ENST00000422002 759 ntBASIC-0.99□□□□□ -2.57
LINC00643Q86TS7 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC-0.99□□□□□ -2.57
LINC00643Q86TS7 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC-0.99□□□□□ -2.57
LINC00643Q86TS7 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC-0.99□□□□□ -2.57
LINC00643Q86TS7 AC093850.1-201ENST00000454121 251 ntBASIC-0.99□□□□□ -2.57
LINC00643Q86TS7 XACT-201ENST00000468762 497 ntTSL 5 BASIC-0.99□□□□□ -2.57
LINC00643Q86TS7 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC-0.99□□□□□ -2.57
LINC00643Q86TS7 RN7SKP164-201ENST00000516138 266 ntBASIC-0.99□□□□□ -2.57
LINC00643Q86TS7 RNU1-142P-201ENST00000516682 145 ntBASIC-0.99□□□□□ -2.57
LINC00643Q86TS7 7SK.7-201ENST00000603504 247 ntBASIC-0.99□□□□□ -2.57
LINC00643Q86TS7 AL078603.1-201ENST00000603824 313 ntBASIC-0.99□□□□□ -2.57
LINC00643Q86TS7 PART1_2.1-201ENST00000612397 250 ntBASIC-0.99□□□□□ -2.57
LINC00643Q86TS7 RMST_10.1-201ENST00000616309 154 ntBASIC-0.99□□□□□ -2.57
LINC00643Q86TS7 AC093875.1-201ENST00000623688 504 ntBASIC-0.99□□□□□ -2.57
LINC00643Q86TS7 RNU6-654P-201ENST00000364373 107 ntBASIC-1□□□□□ -2.57
LINC00643Q86TS7 Y_RNA.423-201ENST00000384057 113 ntBASIC-1□□□□□ -2.57
LINC00643Q86TS7 RNU6-701P-201ENST00000384059 107 ntBASIC-1□□□□□ -2.57
LINC00643Q86TS7 SNORA2B-201ENST00000384583 137 ntBASIC-1□□□□□ -2.57
LINC00643Q86TS7 Y_RNA.567-201ENST00000384736 106 ntBASIC-1□□□□□ -2.57
LINC00643Q86TS7 MIR10A-201ENST00000385043 110 ntBASIC-1□□□□□ -2.57
LINC00643Q86TS7 MIR760-201ENST00000390220 80 ntBASIC-1□□□□□ -2.57
LINC00643Q86TS7 AL354692.1-201ENST00000423044 315 ntBASIC-1□□□□□ -2.57
LINC00643Q86TS7 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC-1□□□□□ -2.57
LINC00643Q86TS7 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC-1□□□□□ -2.57
LINC00643Q86TS7 AC004854.1-201ENST00000440356 349 ntBASIC-1□□□□□ -2.57
LINC00643Q86TS7 AP000870.1-201ENST00000472927 406 ntBASIC-1□□□□□ -2.57
LINC00643Q86TS7 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC-1□□□□□ -2.57
LINC00643Q86TS7 RPS23P5-201ENST00000495419 428 ntBASIC-1□□□□□ -2.57
LINC00643Q86TS7 RNU4-49P-201ENST00000516080 140 ntBASIC-1□□□□□ -2.57
LINC00643Q86TS7 AC138915.2-201ENST00000569776 97 ntBASIC-1□□□□□ -2.57
LINC00643Q86TS7 AL359075.3-201ENST00000613288 217 ntBASIC-1□□□□□ -2.57
LINC00643Q86TS7 MESTIT1_1.1-201ENST00000618871 140 ntBASIC-1□□□□□ -2.57
LINC00643Q86TS7 AC132825.7-201ENST00000638744 335 ntBASIC-1□□□□□ -2.57
LINC00643Q86TS7 RNU6-796P-201ENST00000391086 107 ntBASIC-1.01□□□□□ -2.57
LINC00643Q86TS7 GXYLT1P1-201ENST00000446657 490 ntBASIC-1.01□□□□□ -2.57
LINC00643Q86TS7 AC005042.3-201ENST00000453230 174 ntBASIC-1.01□□□□□ -2.57
LINC00643Q86TS7 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC-1.01□□□□□ -2.57
LINC00643Q86TS7 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC-1.01□□□□□ -2.57
LINC00643Q86TS7 RNU6-977P-201ENST00000516411 103 ntBASIC-1.01□□□□□ -2.57
LINC00643Q86TS7 RNU6-914P-201ENST00000516749 109 ntBASIC-1.01□□□□□ -2.57
LINC00643Q86TS7 SNORA76.2-201ENST00000517095 137 ntBASIC-1.01□□□□□ -2.57
LINC00643Q86TS7 AP001189.2-201ENST00000527320 189 ntBASIC-1.01□□□□□ -2.57
LINC00643Q86TS7 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC-1.01□□□□□ -2.57
LINC00643Q86TS7 RPL17P51-201ENST00000605218 238 ntBASIC-1.01□□□□□ -2.57
LINC00643Q86TS7 AL591926.4-201ENST00000616895 298 ntBASIC-1.01□□□□□ -2.57
LINC00643Q86TS7 U6.108-201ENST00000637764 58 ntBASIC-1.01□□□□□ -2.57
LINC00643Q86TS7 AC121333.1-201ENST00000567488 2709 ntBASIC-1.02□□□□□ -2.57
LINC00643Q86TS7 MIR412-201ENST00000362142 91 ntBASIC-1.02□□□□□ -2.57
LINC00643Q86TS7 AC083799.1-201ENST00000366451 910 ntBASIC-1.02□□□□□ -2.57
LINC00643Q86TS7 RNA5SP201-201ENST00000410316 124 ntBASIC-1.02□□□□□ -2.57
LINC00643Q86TS7 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC-1.02□□□□□ -2.57
LINC00643Q86TS7 USP9YP28-201ENST00000435142 589 ntBASIC-1.02□□□□□ -2.57
LINC00643Q86TS7 AC069271.1-201ENST00000445577 156 ntBASIC-1.02□□□□□ -2.57
LINC00643Q86TS7 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC-1.02□□□□□ -2.57
LINC00643Q86TS7 MTND1P17-201ENST00000448961 204 ntBASIC-1.02□□□□□ -2.57
LINC00643Q86TS7 AL139824.2-201ENST00000458731 1095 ntBASIC-1.02□□□□□ -2.57
LINC00643Q86TS7 RNU6-1069P-201ENST00000516612 133 ntBASIC-1.02□□□□□ -2.57
LINC00643Q86TS7 RNU11-2P-201ENST00000516898 142 ntBASIC-1.02□□□□□ -2.57
LINC00643Q86TS7 IGLVI-20-201ENST00000519296 130 ntBASIC-1.02□□□□□ -2.57
LINC00643Q86TS7 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC-1.02□□□□□ -2.57
LINC00643Q86TS7 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC-1.02□□□□□ -2.57
LINC00643Q86TS7 TMF1P1-201ENST00000576058 373 ntBASIC-1.02□□□□□ -2.57
LINC00643Q86TS7 AP001033.2-201ENST00000609701 1003 ntBASIC-1.02□□□□□ -2.57
LINC00643Q86TS7 RNU6-545P-201ENST00000362681 104 ntBASIC-1.03□□□□□ -2.57
LINC00643Q86TS7 RNU6-1284P-201ENST00000363701 100 ntBASIC-1.03□□□□□ -2.57
LINC00643Q86TS7 RNU6-424P-201ENST00000384367 105 ntBASIC-1.03□□□□□ -2.57
LINC00643Q86TS7 RNA5SP163-201ENST00000410304 99 ntBASIC-1.03□□□□□ -2.57
LINC00643Q86TS7 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC-1.03□□□□□ -2.57
LINC00643Q86TS7 AL358176.2-201ENST00000425769 204 ntBASIC-1.03□□□□□ -2.57
LINC00643Q86TS7 CALM2P4-201ENST00000430810 426 ntBASIC-1.03□□□□□ -2.57
LINC00643Q86TS7 EEF1E1P1-201ENST00000446998 430 ntBASIC-1.03□□□□□ -2.57
LINC00643Q86TS7 HSFY5P-201ENST00000453726 309 ntBASIC-1.03□□□□□ -2.57
LINC00643Q86TS7 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC-1.03□□□□□ -2.57
LINC00643Q86TS7 AC010468.3-201ENST00000508225 458 ntBASIC-1.03□□□□□ -2.57
LINC00643Q86TS7 RNA5SP220-201ENST00000516298 104 ntBASIC-1.03□□□□□ -2.57
LINC00643Q86TS7 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC-1.03□□□□□ -2.57
LINC00643Q86TS7 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC-1.03□□□□□ -2.57
LINC00643Q86TS7 UBE2Q2P8-201ENST00000560644 102 ntBASIC-1.03□□□□□ -2.57
LINC00643Q86TS7 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC-1.03□□□□□ -2.57
LINC00643Q86TS7 AL355073.2-201ENST00000612106 557 ntBASIC-1.03□□□□□ -2.57
LINC00643Q86TS7 AC253576.2-201ENST00000618815 580 ntBASIC-1.03□□□□□ -2.57
LINC00643Q86TS7 MIR4788-201ENST00000639104 80 ntBASIC-1.03□□□□□ -2.57
LINC00643Q86TS7 RNU6-78P-201ENST00000362897 107 ntBASIC-1.04□□□□□ -2.58
LINC00643Q86TS7 Y_RNA.354-201ENST00000365448 111 ntBASIC-1.04□□□□□ -2.58
LINC00643Q86TS7 RNU6-1105P-201ENST00000384774 107 ntBASIC-1.04□□□□□ -2.58
LINC00643Q86TS7 MIR1253-201ENST00000408273 105 ntBASIC-1.04□□□□□ -2.58
LINC00643Q86TS7 MIR1197-201ENST00000408818 88 ntBASIC-1.04□□□□□ -2.58
LINC00643Q86TS7 RNU6-1304P-201ENST00000411374 106 ntBASIC-1.04□□□□□ -2.58
LINC00643Q86TS7 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC-1.04□□□□□ -2.58
LINC00643Q86TS7 AC106883.1-201ENST00000418805 562 ntBASIC-1.04□□□□□ -2.58
LINC00643Q86TS7 RNU7-136P-201ENST00000458819 69 ntBASIC-1.04□□□□□ -2.58
LINC00643Q86TS7 RNU7-140P-201ENST00000459546 60 ntBASIC-1.04□□□□□ -2.58
LINC00643Q86TS7 RNU6-760P-201ENST00000516078 97 ntBASIC-1.04□□□□□ -2.58
Retrieved 100 of 98,524 protein–RNA pairs in 179.8 ms