Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC007283.2-201ENST00000424739 197 ntBASIC0.52□□□□□ -2.33
CCDC88AQ3V6T2 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC0.52□□□□□ -2.33
CCDC88AQ3V6T2 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC0.52□□□□□ -2.33
CCDC88AQ3V6T2 RNU7-14P-201ENST00000459331 62 ntBASIC0.52□□□□□ -2.33
CCDC88AQ3V6T2 SNORD124-201ENST00000459577 104 ntBASIC0.52□□□□□ -2.33
CCDC88AQ3V6T2 SRRM1P2-201ENST00000464531 1192 ntBASIC0.52□□□□□ -2.33
CCDC88AQ3V6T2 RNU2-34P-201ENST00000516534 121 ntBASIC0.52□□□□□ -2.33
CCDC88AQ3V6T2 RNA5SP503-201ENST00000517047 117 ntBASIC0.52□□□□□ -2.33
CCDC88AQ3V6T2 AC018767.1-201ENST00000566236 405 ntTSL 3 BASIC0.52□□□□□ -2.33
CCDC88AQ3V6T2 MIR4709-201ENST00000577272 72 ntBASIC0.52□□□□□ -2.33
CCDC88AQ3V6T2 AC018714.1-201ENST00000605028 208 ntBASIC0.52□□□□□ -2.33
CCDC88AQ3V6T2 BX284668.6-201ENST00000606899 438 ntBASIC0.52□□□□□ -2.33
CCDC88AQ3V6T2 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC0.52□□□□□ -2.33
CCDC88AQ3V6T2 Y_RNA.18-201ENST00000362461 102 ntBASIC0.52□□□□□ -2.33
CCDC88AQ3V6T2 RNU4-48P-201ENST00000365559 182 ntBASIC0.52□□□□□ -2.33
CCDC88AQ3V6T2 MED13P1-201ENST00000428342 171 ntBASIC0.52□□□□□ -2.33
CCDC88AQ3V6T2 USP9YP14-201ENST00000430663 563 ntBASIC0.52□□□□□ -2.33
CCDC88AQ3V6T2 RPS26P48-201ENST00000491713 339 ntBASIC0.52□□□□□ -2.33
CCDC88AQ3V6T2 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC0.52□□□□□ -2.33
CCDC88AQ3V6T2 AC008628.2-201ENST00000502605 298 ntBASIC0.52□□□□□ -2.33
CCDC88AQ3V6T2 AC105417.1-201ENST00000514691 285 ntBASIC0.52□□□□□ -2.33
CCDC88AQ3V6T2 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC0.52□□□□□ -2.33
CCDC88AQ3V6T2 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC0.52□□□□□ -2.33
CCDC88AQ3V6T2 MTATP6P15-201ENST00000527233 835 ntBASIC0.52□□□□□ -2.33
CCDC88AQ3V6T2 MIR4514-201ENST00000581410 57 ntBASIC0.52□□□□□ -2.33
CCDC88AQ3V6T2 AC068790.6-201ENST00000602558 258 ntBASIC0.52□□□□□ -2.33
CCDC88AQ3V6T2 AC078795.3-201ENST00000602913 472 ntBASIC0.52□□□□□ -2.33
CCDC88AQ3V6T2 AC107304.1-201ENST00000604229 296 ntBASIC0.52□□□□□ -2.33
CCDC88AQ3V6T2 TTK-211ENST00000627129 240 ntTSL 5 BASIC0.52□□□□□ -2.33
CCDC88AQ3V6T2 AC245060.5-201ENST00000610778 3293 ntBASIC0.51□□□□□ -2.33
CCDC88AQ3V6T2 MTCO2P7-201ENST00000446518 666 ntBASIC0.51□□□□□ -2.33
CCDC88AQ3V6T2 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC0.51□□□□□ -2.33
CCDC88AQ3V6T2 SNORD79.1-201ENST00000516069 84 ntBASIC0.51□□□□□ -2.33
CCDC88AQ3V6T2 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC0.51□□□□□ -2.33
CCDC88AQ3V6T2 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC0.51□□□□□ -2.33
CCDC88AQ3V6T2 MIR3941-201ENST00000582572 103 ntBASIC0.51□□□□□ -2.33
CCDC88AQ3V6T2 SNRPGP20-201ENST00000604477 205 ntBASIC0.51□□□□□ -2.33
CCDC88AQ3V6T2 AC105148.1-201ENST00000604961 409 ntBASIC0.51□□□□□ -2.33
CCDC88AQ3V6T2 AC107308.1-201ENST00000615897 301 ntBASIC0.51□□□□□ -2.33
CCDC88AQ3V6T2 MIR5087-201ENST00000635826 76 ntBASIC0.51□□□□□ -2.33
CCDC88AQ3V6T2 AL445984.1-201ENST00000637834 659 ntBASIC0.51□□□□□ -2.33
CCDC88AQ3V6T2 AC006927.3-201ENST00000638789 384 ntBASIC0.51□□□□□ -2.33
CCDC88AQ3V6T2 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.51□□□□□ -2.33
CCDC88AQ3V6T2 MTND4P4-201ENST00000439033 1366 ntBASIC0.5□□□□□ -2.33
CCDC88AQ3V6T2 SNORD114-24-201ENST00000365029 72 ntBASIC0.5□□□□□ -2.33
CCDC88AQ3V6T2 RNU6-641P-201ENST00000384006 107 ntBASIC0.5□□□□□ -2.33
CCDC88AQ3V6T2 AC114482.1-201ENST00000418010 247 ntBASIC0.5□□□□□ -2.33
CCDC88AQ3V6T2 AL356583.2-201ENST00000426536 280 ntBASIC0.5□□□□□ -2.33
CCDC88AQ3V6T2 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC0.5□□□□□ -2.33
CCDC88AQ3V6T2 RPL22P17-201ENST00000438729 315 ntBASIC0.5□□□□□ -2.33
CCDC88AQ3V6T2 SNRPEP8-201ENST00000442866 260 ntBASIC0.5□□□□□ -2.33
CCDC88AQ3V6T2 EXOSC3P1-201ENST00000448649 500 ntBASIC0.5□□□□□ -2.33
CCDC88AQ3V6T2 MTCYBP1-201ENST00000454315 1119 ntBASIC0.5□□□□□ -2.33
CCDC88AQ3V6T2 AL049829.1-201ENST00000465411 156 ntBASIC0.5□□□□□ -2.33
CCDC88AQ3V6T2 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC0.5□□□□□ -2.33
CCDC88AQ3V6T2 AC010486.2-201ENST00000505572 483 ntBASIC0.5□□□□□ -2.33
CCDC88AQ3V6T2 AC022616.6-201ENST00000520479 119 ntBASIC0.5□□□□□ -2.33
CCDC88AQ3V6T2 AC136628.3-201ENST00000521868 290 ntBASIC0.5□□□□□ -2.33
CCDC88AQ3V6T2 AP003327.1-201ENST00000529684 127 ntBASIC0.5□□□□□ -2.33
CCDC88AQ3V6T2 AC004584.2-201ENST00000570407 410 ntBASIC0.5□□□□□ -2.33
CCDC88AQ3V6T2 AC063943.3-201ENST00000615562 356 ntBASIC0.5□□□□□ -2.33
CCDC88AQ3V6T2 AP000720.1-201ENST00000625091 483 ntBASIC0.5□□□□□ -2.33
CCDC88AQ3V6T2 SNORD3E-202ENST00000627253 216 ntBASIC0.5□□□□□ -2.33
CCDC88AQ3V6T2 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.5□□□□□ -2.33
CCDC88AQ3V6T2 MTND4P5-201ENST00000435821 1374 ntBASIC0.5□□□□□ -2.33
CCDC88AQ3V6T2 RNU6-116P-201ENST00000384042 109 ntBASIC0.5□□□□□ -2.33
CCDC88AQ3V6T2 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC0.5□□□□□ -2.33
CCDC88AQ3V6T2 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC0.5□□□□□ -2.33
CCDC88AQ3V6T2 AC084290.1-201ENST00000434995 374 ntBASIC0.5□□□□□ -2.33
CCDC88AQ3V6T2 HSPE1P13-201ENST00000451143 297 ntBASIC0.5□□□□□ -2.33
CCDC88AQ3V6T2 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC0.5□□□□□ -2.33
CCDC88AQ3V6T2 WDR78-207ENST00000488333 613 ntTSL 3 BASIC0.5□□□□□ -2.33
CCDC88AQ3V6T2 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC0.5□□□□□ -2.33
CCDC88AQ3V6T2 RNA5SP168-201ENST00000516642 112 ntBASIC0.5□□□□□ -2.33
CCDC88AQ3V6T2 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC0.5□□□□□ -2.33
CCDC88AQ3V6T2 AL121579.1-201ENST00000555129 305 ntBASIC0.5□□□□□ -2.33
CCDC88AQ3V6T2 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC0.5□□□□□ -2.33
CCDC88AQ3V6T2 AL357312.1-201ENST00000603879 298 ntBASIC0.5□□□□□ -2.33
CCDC88AQ3V6T2 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC0.5□□□□□ -2.33
CCDC88AQ3V6T2 AL021879.1-201ENST00000611756 288 ntBASIC0.5□□□□□ -2.33
CCDC88AQ3V6T2 AC010608.3-201ENST00000625048 527 ntBASIC0.5□□□□□ -2.33
CCDC88AQ3V6T2 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC0.49□□□□□ -2.33
CCDC88AQ3V6T2 RNY1P12-201ENST00000364251 105 ntBASIC0.49□□□□□ -2.33
CCDC88AQ3V6T2 RNU6-439P-201ENST00000384188 106 ntBASIC0.49□□□□□ -2.33
CCDC88AQ3V6T2 Y_RNA.471-201ENST00000384312 102 ntBASIC0.49□□□□□ -2.33
CCDC88AQ3V6T2 RNU6-434P-201ENST00000384376 107 ntBASIC0.49□□□□□ -2.33
CCDC88AQ3V6T2 MIR300-201ENST00000401138 83 ntBASIC0.49□□□□□ -2.33
CCDC88AQ3V6T2 AC010099.3-201ENST00000423896 409 ntBASIC0.49□□□□□ -2.33
CCDC88AQ3V6T2 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC0.49□□□□□ -2.33
CCDC88AQ3V6T2 MTCO3P18-201ENST00000440206 761 ntBASIC0.49□□□□□ -2.33
CCDC88AQ3V6T2 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC0.49□□□□□ -2.33
CCDC88AQ3V6T2 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC0.49□□□□□ -2.33
CCDC88AQ3V6T2 AL359999.1-201ENST00000604513 294 ntBASIC0.49□□□□□ -2.33
CCDC88AQ3V6T2 MPP6-209ENST00000625307 126 ntTSL 5 BASIC0.49□□□□□ -2.33
CCDC88AQ3V6T2 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC0.49□□□□□ -2.33
CCDC88AQ3V6T2 RNA5SP327-201ENST00000362494 101 ntBASIC0.48□□□□□ -2.33
CCDC88AQ3V6T2 U3.9-201ENST00000363823 204 ntBASIC0.48□□□□□ -2.33
CCDC88AQ3V6T2 SNORA24.1-201ENST00000384401 135 ntBASIC0.48□□□□□ -2.33
CCDC88AQ3V6T2 RNU6-417P-201ENST00000384712 107 ntBASIC0.48□□□□□ -2.33
CCDC88AQ3V6T2 Y_RNA.598-201ENST00000410480 95 ntBASIC0.48□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 107.1 ms