Protein–RNA interactions for Protein: Q15858

SCN9A, Sodium channel protein type 9 subunit alpha, humanhuman

Predictions only

Length 1,988 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9AQ15858 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.72□□□□□ -2.29
SCN9AQ15858 AC110760.3-201ENST00000598794 467 ntBASIC0.72□□□□□ -2.29
SCN9AQ15858 AC011458.1-201ENST00000604034 617 ntBASIC0.72□□□□□ -2.29
SCN9AQ15858 AC064807.4-201ENST00000607201 407 ntBASIC0.72□□□□□ -2.29
SCN9AQ15858 AL136221.1-201ENST00000621449 509 ntBASIC0.72□□□□□ -2.29
SCN9AQ15858 AF246928.1-201ENST00000623768 87 ntBASIC0.72□□□□□ -2.29
SCN9AQ15858 RNU6-550P-201ENST00000391057 101 ntBASIC0.71□□□□□ -2.3
SCN9AQ15858 RNU6-584P-201ENST00000410350 95 ntBASIC0.71□□□□□ -2.3
SCN9AQ15858 RNU6-1054P-201ENST00000411293 104 ntBASIC0.71□□□□□ -2.3
SCN9AQ15858 RPS3AP3-201ENST00000411933 242 ntBASIC0.71□□□□□ -2.3
SCN9AQ15858 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC0.71□□□□□ -2.3
SCN9AQ15858 AC013410.2-201ENST00000422627 201 ntBASIC0.71□□□□□ -2.3
SCN9AQ15858 HSPE1P9-201ENST00000440046 311 ntBASIC0.71□□□□□ -2.3
SCN9AQ15858 AC027119.1-201ENST00000440877 241 ntBASIC0.71□□□□□ -2.3
SCN9AQ15858 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC0.71□□□□□ -2.3
SCN9AQ15858 SNRPEP8-201ENST00000442866 260 ntBASIC0.71□□□□□ -2.3
SCN9AQ15858 AC108078.1-201ENST00000508073 725 ntBASIC0.71□□□□□ -2.3
SCN9AQ15858 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC0.71□□□□□ -2.3
SCN9AQ15858 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC0.71□□□□□ -2.3
SCN9AQ15858 RNU6ATAC35P-201ENST00000609276 444 ntBASIC0.71□□□□□ -2.3
SCN9AQ15858 AC012676.2-201ENST00000619258 186 ntBASIC0.71□□□□□ -2.3
SCN9AQ15858 AC009161.2-201ENST00000624626 138 ntBASIC0.71□□□□□ -2.3
SCN9AQ15858 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC0.71□□□□□ -2.3
SCN9AQ15858 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC0.71□□□□□ -2.3
SCN9AQ15858 SNORA25-201ENST00000384384 134 ntBASIC0.7□□□□□ -2.3
SCN9AQ15858 AC098592.1-201ENST00000419352 333 ntBASIC0.7□□□□□ -2.3
SCN9AQ15858 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC0.7□□□□□ -2.3
SCN9AQ15858 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC0.7□□□□□ -2.3
SCN9AQ15858 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC0.7□□□□□ -2.3
SCN9AQ15858 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC0.7□□□□□ -2.3
SCN9AQ15858 RNU7-14P-201ENST00000459331 62 ntBASIC0.7□□□□□ -2.3
SCN9AQ15858 RNU6-1098P-201ENST00000516772 96 ntBASIC0.7□□□□□ -2.3
SCN9AQ15858 RNA5SP481-201ENST00000516814 122 ntBASIC0.7□□□□□ -2.3
SCN9AQ15858 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC0.7□□□□□ -2.3
SCN9AQ15858 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC0.7□□□□□ -2.3
SCN9AQ15858 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC0.7□□□□□ -2.3
SCN9AQ15858 MIR5006-201ENST00000583027 110 ntBASIC0.7□□□□□ -2.3
SCN9AQ15858 AC245014.2-201ENST00000603689 287 ntBASIC0.7□□□□□ -2.3
SCN9AQ15858 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC0.7□□□□□ -2.3
SCN9AQ15858 AC246785.4-201ENST00000605374 287 ntBASIC0.7□□□□□ -2.3
SCN9AQ15858 MIR8063-201ENST00000621930 81 ntBASIC0.7□□□□□ -2.3
SCN9AQ15858 MIR924-201ENST00000638017 53 ntBASIC0.7□□□□□ -2.3
SCN9AQ15858 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC0.7□□□□□ -2.3
SCN9AQ15858 RNU6-296P-201ENST00000384608 107 ntBASIC0.7□□□□□ -2.3
SCN9AQ15858 Y_RNA.560-201ENST00000384689 102 ntBASIC0.7□□□□□ -2.3
SCN9AQ15858 RNA5SP511-201ENST00000410487 115 ntBASIC0.7□□□□□ -2.3
SCN9AQ15858 PIGFP2-201ENST00000421400 651 ntBASIC0.7□□□□□ -2.3
SCN9AQ15858 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC0.7□□□□□ -2.3
SCN9AQ15858 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC0.7□□□□□ -2.3
SCN9AQ15858 AC145146.1-201ENST00000496370 254 ntBASIC0.7□□□□□ -2.3
SCN9AQ15858 AC008628.2-201ENST00000502605 298 ntBASIC0.7□□□□□ -2.3
SCN9AQ15858 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC0.7□□□□□ -2.3
SCN9AQ15858 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC0.7□□□□□ -2.3
SCN9AQ15858 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC0.7□□□□□ -2.3
SCN9AQ15858 MIR3941-201ENST00000582572 103 ntBASIC0.7□□□□□ -2.3
SCN9AQ15858 AC022306.3-201ENST00000619930 550 ntBASIC0.7□□□□□ -2.3
SCN9AQ15858 AC131159.1-201ENST00000621854 213 ntBASIC0.7□□□□□ -2.3
SCN9AQ15858 AC068205.3-201ENST00000636385 468 ntBASIC0.7□□□□□ -2.3
SCN9AQ15858 ELL2P3-201ENST00000457883 1602 ntBASIC0.69□□□□□ -2.3
SCN9AQ15858 AC245060.5-201ENST00000610778 3293 ntBASIC0.69□□□□□ -2.3
SCN9AQ15858 AL390237.1-201ENST00000404226 1415 ntBASIC0.69□□□□□ -2.3
SCN9AQ15858 Y_RNA.367-201ENST00000365544 101 ntBASIC0.69□□□□□ -2.3
SCN9AQ15858 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC0.69□□□□□ -2.3
SCN9AQ15858 AL590135.1-201ENST00000422215 156 ntBASIC0.69□□□□□ -2.3
SCN9AQ15858 AC011233.1-201ENST00000422812 283 ntBASIC0.69□□□□□ -2.3
SCN9AQ15858 AC019205.3-201ENST00000424573 156 ntBASIC0.69□□□□□ -2.3
SCN9AQ15858 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC0.69□□□□□ -2.3
SCN9AQ15858 AC016700.2-201ENST00000446011 156 ntBASIC0.69□□□□□ -2.3
SCN9AQ15858 RPS29P15-201ENST00000458329 171 ntBASIC0.69□□□□□ -2.3
SCN9AQ15858 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC0.69□□□□□ -2.3
SCN9AQ15858 AC015911.1-201ENST00000495111 156 ntBASIC0.69□□□□□ -2.3
SCN9AQ15858 RN7SKP88-201ENST00000516847 250 ntBASIC0.69□□□□□ -2.3
SCN9AQ15858 CYP3A52P-201ENST00000563326 91 ntBASIC0.69□□□□□ -2.3
SCN9AQ15858 CTHRC1P1-201ENST00000605383 469 ntBASIC0.69□□□□□ -2.3
SCN9AQ15858 7SK.8-201ENST00000612110 250 ntBASIC0.69□□□□□ -2.3
SCN9AQ15858 AC122133.1-201ENST00000613964 233 ntBASIC0.69□□□□□ -2.3
SCN9AQ15858 7SK.11-201ENST00000615477 250 ntBASIC0.69□□□□□ -2.3
SCN9AQ15858 MIR2909-201ENST00000617113 69 ntBASIC0.69□□□□□ -2.3
SCN9AQ15858 7SK.13-201ENST00000622040 250 ntBASIC0.69□□□□□ -2.3
SCN9AQ15858 MTND4P14-201ENST00000435799 1354 ntBASIC0.69□□□□□ -2.3
SCN9AQ15858 MIR302D-201ENST00000362275 68 ntBASIC0.68□□□□□ -2.3
SCN9AQ15858 RNU6-552P-201ENST00000362869 119 ntBASIC0.68□□□□□ -2.3
SCN9AQ15858 RNU6-181P-201ENST00000363225 107 ntBASIC0.68□□□□□ -2.3
SCN9AQ15858 RNU6-733P-201ENST00000410759 104 ntBASIC0.68□□□□□ -2.3
SCN9AQ15858 RNU6-195P-201ENST00000411352 109 ntBASIC0.68□□□□□ -2.3
SCN9AQ15858 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC0.68□□□□□ -2.3
SCN9AQ15858 CDK8P2-201ENST00000415020 547 ntBASIC0.68□□□□□ -2.3
SCN9AQ15858 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC0.68□□□□□ -2.3
SCN9AQ15858 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC0.68□□□□□ -2.3
SCN9AQ15858 RNU6-496P-201ENST00000516145 99 ntBASIC0.68□□□□□ -2.3
SCN9AQ15858 RNU6-445P-201ENST00000516949 107 ntBASIC0.68□□□□□ -2.3
SCN9AQ15858 AC016256.1-201ENST00000547971 354 ntBASIC0.68□□□□□ -2.3
SCN9AQ15858 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.68□□□□□ -2.3
SCN9AQ15858 AC091805.2-201ENST00000603848 235 ntBASIC0.68□□□□□ -2.3
SCN9AQ15858 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC0.68□□□□□ -2.3
SCN9AQ15858 AC006566.1-201ENST00000608943 513 ntBASIC0.68□□□□□ -2.3
SCN9AQ15858 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC0.68□□□□□ -2.3
SCN9AQ15858 MIR340-201ENST00000362125 95 ntBASIC0.68□□□□□ -2.3
SCN9AQ15858 Y_RNA.115-201ENST00000363272 98 ntBASIC0.68□□□□□ -2.3
SCN9AQ15858 U3.9-201ENST00000363823 204 ntBASIC0.68□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 107.8 ms