Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC2.63□□□□□ -1.99
HOXA4Q00056 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
HOXA4Q00056 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
HOXA4Q00056 AC009487.2-201ENST00000420969 6821 ntBASIC2.62□□□□□ -1.99
HOXA4Q00056 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
HOXA4Q00056 RNU1-62P-201ENST00000362599 164 ntBASIC2.62□□□□□ -1.99
HOXA4Q00056 RNA5SP383-201ENST00000362934 120 ntBASIC2.62□□□□□ -1.99
HOXA4Q00056 Y_RNA.101-201ENST00000363154 102 ntBASIC2.62□□□□□ -1.99
HOXA4Q00056 RNU5F-3P-201ENST00000363767 117 ntBASIC2.62□□□□□ -1.99
HOXA4Q00056 SNORA38.1-201ENST00000364172 131 ntBASIC2.62□□□□□ -1.99
HOXA4Q00056 Y_RNA.230-201ENST00000364348 109 ntBASIC2.62□□□□□ -1.99
HOXA4Q00056 Y_RNA.269-201ENST00000364685 89 ntBASIC2.62□□□□□ -1.99
HOXA4Q00056 SNORA18.2-201ENST00000383865 132 ntBASIC2.62□□□□□ -1.99
HOXA4Q00056 SNORA18.3-201ENST00000384122 132 ntBASIC2.62□□□□□ -1.99
HOXA4Q00056 SNORA46.1-201ENST00000391069 153 ntBASIC2.62□□□□□ -1.99
HOXA4Q00056 SNORD58.1-201ENST00000391313 66 ntBASIC2.62□□□□□ -1.99
HOXA4Q00056 RNU6ATAC10P-201ENST00000408635 111 ntBASIC2.62□□□□□ -1.99
HOXA4Q00056 RPL19P1-201ENST00000411635 428 ntBASIC2.62□□□□□ -1.99
HOXA4Q00056 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC2.62□□□□□ -1.99
HOXA4Q00056 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC2.62□□□□□ -1.99
HOXA4Q00056 IFNA11P-201ENST00000446352 526 ntBASIC2.62□□□□□ -1.99
HOXA4Q00056 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC2.62□□□□□ -1.99
HOXA4Q00056 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC2.62□□□□□ -1.99
HOXA4Q00056 AC008885.1-201ENST00000514930 301 ntBASIC2.62□□□□□ -1.99
HOXA4Q00056 AC074133.1-201ENST00000515696 183 ntBASIC2.62□□□□□ -1.99
HOXA4Q00056 RNU6-138P-201ENST00000515952 107 ntBASIC2.62□□□□□ -1.99
HOXA4Q00056 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.62□□□□□ -1.99
HOXA4Q00056 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC2.62□□□□□ -1.99
HOXA4Q00056 AP002001.1-203ENST00000534002 267 ntBASIC2.62□□□□□ -1.99
HOXA4Q00056 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC2.62□□□□□ -1.99
HOXA4Q00056 XIST_intron.1-201ENST00000619444 68 ntBASIC2.62□□□□□ -1.99
HOXA4Q00056 PCNP-208ENST00000627393 136 ntTSL 2 BASIC2.62□□□□□ -1.99
HOXA4Q00056 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
HOXA4Q00056 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC2.62□□□□□ -1.99
HOXA4Q00056 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC2.62□□□□□ -1.99
HOXA4Q00056 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.62□□□□□ -1.99
HOXA4Q00056 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
HOXA4Q00056 AC091564.4-201ENST00000533934 2194 ntBASIC2.61□□□□□ -1.99
HOXA4Q00056 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC2.61□□□□□ -1.99
HOXA4Q00056 Y_RNA.331-201ENST00000365267 102 ntBASIC2.61□□□□□ -1.99
HOXA4Q00056 RNU6-326P-201ENST00000365480 107 ntBASIC2.61□□□□□ -1.99
HOXA4Q00056 RNU6-805P-201ENST00000365643 106 ntBASIC2.61□□□□□ -1.99
HOXA4Q00056 Y_RNA.415-201ENST00000384012 112 ntBASIC2.61□□□□□ -1.99
HOXA4Q00056 MIR128-1-201ENST00000384921 82 ntBASIC2.61□□□□□ -1.99
HOXA4Q00056 MIR320B2-201ENST00000408479 138 ntBASIC2.61□□□□□ -1.99
HOXA4Q00056 RNU2-64P-201ENST00000411315 191 ntBASIC2.61□□□□□ -1.99
HOXA4Q00056 UBE2Q2P12-201ENST00000414573 204 ntBASIC2.61□□□□□ -1.99
HOXA4Q00056 RAB28P5-201ENST00000427490 651 ntBASIC2.61□□□□□ -1.99
HOXA4Q00056 ARF4P2-201ENST00000430209 526 ntBASIC2.61□□□□□ -1.99
HOXA4Q00056 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC2.61□□□□□ -1.99
HOXA4Q00056 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC2.61□□□□□ -1.99
HOXA4Q00056 AL136097.1-201ENST00000456945 913 ntBASIC2.61□□□□□ -1.99
HOXA4Q00056 AC146507.2-201ENST00000460608 476 ntBASIC2.61□□□□□ -1.99
HOXA4Q00056 AC109925.1-201ENST00000478069 331 ntBASIC2.61□□□□□ -1.99
HOXA4Q00056 AL049830.2-201ENST00000480072 201 ntBASIC2.61□□□□□ -1.99
HOXA4Q00056 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC2.61□□□□□ -1.99
HOXA4Q00056 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC2.61□□□□□ -1.99
HOXA4Q00056 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC2.61□□□□□ -1.99
HOXA4Q00056 RNU2-44P-201ENST00000516795 194 ntBASIC2.61□□□□□ -1.99
HOXA4Q00056 RNU2-31P-201ENST00000516954 155 ntBASIC2.61□□□□□ -1.99
HOXA4Q00056 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC2.61□□□□□ -1.99
HOXA4Q00056 MIR5006-201ENST00000583027 110 ntBASIC2.61□□□□□ -1.99
HOXA4Q00056 RPL30P11-203ENST00000598995 310 ntBASIC2.61□□□□□ -1.99
HOXA4Q00056 AC022441.3-201ENST00000605737 136 ntBASIC2.61□□□□□ -1.99
HOXA4Q00056 BX284668.6-201ENST00000606899 438 ntBASIC2.61□□□□□ -1.99
HOXA4Q00056 AC005562.2-201ENST00000618264 111 ntBASIC2.61□□□□□ -1.99
HOXA4Q00056 MIR8057-201ENST00000620957 69 ntBASIC2.61□□□□□ -1.99
HOXA4Q00056 AC006001.4-201ENST00000622243 395 ntBASIC2.61□□□□□ -1.99
HOXA4Q00056 IGHVIII-44-202ENST00000636235 289 ntBASIC2.61□□□□□ -1.99
HOXA4Q00056 HDX-206ENST00000506585 6158 ntTSL 2 BASIC2.61□□□□□ -1.99
HOXA4Q00056 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC2.61□□□□□ -1.99
HOXA4Q00056 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.6□□□□□ -1.99
HOXA4Q00056 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
HOXA4Q00056 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC2.6□□□□□ -1.99
HOXA4Q00056 RNU6-200P-201ENST00000364743 107 ntBASIC2.6□□□□□ -1.99
HOXA4Q00056 SNORD87-201ENST00000364849 89 ntBASIC2.6□□□□□ -1.99
HOXA4Q00056 SNORA48.2-201ENST00000390926 124 ntBASIC2.6□□□□□ -1.99
HOXA4Q00056 SNORA53-201ENST00000391141 249 ntBASIC2.6□□□□□ -1.99
HOXA4Q00056 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC2.6□□□□□ -1.99
HOXA4Q00056 MTND5P15-201ENST00000434246 349 ntBASIC2.6□□□□□ -1.99
HOXA4Q00056 AC006028.1-201ENST00000438379 402 ntBASIC2.6□□□□□ -1.99
HOXA4Q00056 RPL31P41-201ENST00000477967 372 ntBASIC2.6□□□□□ -1.99
HOXA4Q00056 RN7SL20P-201ENST00000488827 297 ntBASIC2.6□□□□□ -1.99
HOXA4Q00056 SNORA70.24-201ENST00000517233 118 ntBASIC2.6□□□□□ -1.99
HOXA4Q00056 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.6□□□□□ -1.99
HOXA4Q00056 AC022080.3-201ENST00000544433 482 ntBASIC2.6□□□□□ -1.99
HOXA4Q00056 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC2.6□□□□□ -1.99
HOXA4Q00056 AC130289.1-201ENST00000577321 73 ntBASIC2.6□□□□□ -1.99
HOXA4Q00056 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC2.6□□□□□ -1.99
HOXA4Q00056 MIR5004-201ENST00000579078 107 ntBASIC2.6□□□□□ -1.99
HOXA4Q00056 AC103810.1-201ENST00000579873 453 ntBASIC2.6□□□□□ -1.99
HOXA4Q00056 MIR5195-201ENST00000583555 115 ntBASIC2.6□□□□□ -1.99
HOXA4Q00056 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC2.6□□□□□ -1.99
HOXA4Q00056 AC009779.6-201ENST00000603972 165 ntBASIC2.6□□□□□ -1.99
HOXA4Q00056 TCL6_2.1-201ENST00000615162 119 ntBASIC2.6□□□□□ -1.99
HOXA4Q00056 U2.14-201ENST00000615943 113 ntBASIC2.6□□□□□ -1.99
HOXA4Q00056 AC007318.2-201ENST00000620999 243 ntBASIC2.6□□□□□ -1.99
HOXA4Q00056 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC2.6□□□□□ -1.99
HOXA4Q00056 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC2.6□□□□□ -1.99
HOXA4Q00056 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC2.6□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 82.9 ms