Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC2.48□□□□□ -2.01
PTPN9P43378 SNORD116.3-201ENST00000517176 78 ntBASIC2.48□□□□□ -2.01
PTPN9P43378 MIR2355-201ENST00000517199 87 ntBASIC2.48□□□□□ -2.01
PTPN9P43378 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC2.48□□□□□ -2.01
PTPN9P43378 AC027288.2-201ENST00000553028 243 ntBASIC2.48□□□□□ -2.01
PTPN9P43378 AC026470.2-201ENST00000561492 181 ntBASIC2.48□□□□□ -2.01
PTPN9P43378 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC2.48□□□□□ -2.01
PTPN9P43378 MYL12BP1-201ENST00000569826 507 ntBASIC2.48□□□□□ -2.01
PTPN9P43378 AL355802.3-201ENST00000607571 545 ntBASIC2.48□□□□□ -2.01
PTPN9P43378 U4atac.1-201ENST00000618345 95 ntBASIC2.48□□□□□ -2.01
PTPN9P43378 AC090517.3-201ENST00000625170 141 ntBASIC2.48□□□□□ -2.01
PTPN9P43378 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.48□□□□□ -2.01
PTPN9P43378 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.48□□□□□ -2.01
PTPN9P43378 BX322639.1-202ENST00000423987 2213 ntBASIC2.48□□□□□ -2.01
PTPN9P43378 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.47□□□□□ -2.01
PTPN9P43378 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.47□□□□□ -2.01
PTPN9P43378 MIR369-201ENST00000362155 70 ntBASIC2.47□□□□□ -2.01
PTPN9P43378 SNORD114-30-201ENST00000364448 72 ntBASIC2.47□□□□□ -2.01
PTPN9P43378 Y_RNA.319-201ENST00000365138 92 ntBASIC2.47□□□□□ -2.01
PTPN9P43378 Y_RNA.445-201ENST00000384168 102 ntBASIC2.47□□□□□ -2.01
PTPN9P43378 SNORA67.4-201ENST00000384688 142 ntBASIC2.47□□□□□ -2.01
PTPN9P43378 RNU1-139P-201ENST00000391307 165 ntBASIC2.47□□□□□ -2.01
PTPN9P43378 MIR548P-201ENST00000408336 84 ntBASIC2.47□□□□□ -2.01
PTPN9P43378 AC005534.2-201ENST00000431047 433 ntBASIC2.47□□□□□ -2.01
PTPN9P43378 AL035666.1-201ENST00000446195 348 ntBASIC2.47□□□□□ -2.01
PTPN9P43378 AL513328.1-201ENST00000446460 224 ntBASIC2.47□□□□□ -2.01
PTPN9P43378 SNORA59A-201ENST00000459326 152 ntBASIC2.47□□□□□ -2.01
PTPN9P43378 AC090515.1-201ENST00000465295 476 ntBASIC2.47□□□□□ -2.01
PTPN9P43378 ANXA2P1-201ENST00000505539 926 ntBASIC2.47□□□□□ -2.01
PTPN9P43378 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC2.47□□□□□ -2.01
PTPN9P43378 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.47□□□□□ -2.01
PTPN9P43378 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC2.47□□□□□ -2.01
PTPN9P43378 RNU6-120P-201ENST00000516077 103 ntBASIC2.47□□□□□ -2.01
PTPN9P43378 RNU6-911P-201ENST00000516523 104 ntBASIC2.47□□□□□ -2.01
PTPN9P43378 RNA5SP402-201ENST00000517148 110 ntBASIC2.47□□□□□ -2.01
PTPN9P43378 AC144568.1-201ENST00000520139 137 ntBASIC2.47□□□□□ -2.01
PTPN9P43378 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.47□□□□□ -2.01
PTPN9P43378 SNRPGP17-201ENST00000603780 214 ntBASIC2.47□□□□□ -2.01
PTPN9P43378 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC2.47□□□□□ -2.01
PTPN9P43378 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
PTPN9P43378 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.46□□□□□ -2.02
PTPN9P43378 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.46□□□□□ -2.02
PTPN9P43378 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC2.46□□□□□ -2.02
PTPN9P43378 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
PTPN9P43378 RNU6-245P-201ENST00000384020 107 ntBASIC2.46□□□□□ -2.02
PTPN9P43378 RNU6-1011P-201ENST00000384668 107 ntBASIC2.46□□□□□ -2.02
PTPN9P43378 RNU6-1093P-201ENST00000391194 107 ntBASIC2.46□□□□□ -2.02
PTPN9P43378 MIR320B2-201ENST00000408479 138 ntBASIC2.46□□□□□ -2.02
PTPN9P43378 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC2.46□□□□□ -2.02
PTPN9P43378 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC2.46□□□□□ -2.02
PTPN9P43378 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC2.46□□□□□ -2.02
PTPN9P43378 UBE2DNL-203ENST00000474922 222 ntBASIC2.46□□□□□ -2.02
PTPN9P43378 CKS1BP2-201ENST00000497342 240 ntBASIC2.46□□□□□ -2.02
PTPN9P43378 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.46□□□□□ -2.02
PTPN9P43378 RNA5SP24-201ENST00000516478 95 ntBASIC2.46□□□□□ -2.02
PTPN9P43378 RNU6-58P-201ENST00000517143 103 ntBASIC2.46□□□□□ -2.02
PTPN9P43378 IGLV3-17-201ENST00000519099 244 ntBASIC2.46□□□□□ -2.02
PTPN9P43378 AC091144.1-201ENST00000519573 138 ntBASIC2.46□□□□□ -2.02
PTPN9P43378 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.46□□□□□ -2.02
PTPN9P43378 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
PTPN9P43378 AC021269.2-201ENST00000532318 330 ntBASIC2.46□□□□□ -2.02
PTPN9P43378 AL442663.2-201ENST00000554385 511 ntBASIC2.46□□□□□ -2.02
PTPN9P43378 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC2.46□□□□□ -2.02
PTPN9P43378 TEX41-243ENST00000614173 190 ntTSL 5 BASIC2.46□□□□□ -2.02
PTPN9P43378 AL138825.1-201ENST00000618587 192 ntBASIC2.46□□□□□ -2.02
PTPN9P43378 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.46□□□□□ -2.02
PTPN9P43378 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.46□□□□□ -2.02
PTPN9P43378 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC2.46□□□□□ -2.02
PTPN9P43378 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.45□□□□□ -2.02
PTPN9P43378 Y_RNA.138-201ENST00000363462 102 ntBASIC2.45□□□□□ -2.02
PTPN9P43378 RNU6-474P-201ENST00000384243 107 ntBASIC2.45□□□□□ -2.02
PTPN9P43378 Y_RNA.496-201ENST00000384444 101 ntBASIC2.45□□□□□ -2.02
PTPN9P43378 Y_RNA.597-201ENST00000410463 100 ntBASIC2.45□□□□□ -2.02
PTPN9P43378 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC2.45□□□□□ -2.02
PTPN9P43378 AC092423.1-201ENST00000430165 186 ntBASIC2.45□□□□□ -2.02
PTPN9P43378 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.45□□□□□ -2.02
PTPN9P43378 RN7SL636P-201ENST00000497504 294 ntBASIC2.45□□□□□ -2.02
PTPN9P43378 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC2.45□□□□□ -2.02
PTPN9P43378 RNU6-1114P-201ENST00000516022 107 ntBASIC2.45□□□□□ -2.02
PTPN9P43378 AC090617.3-201ENST00000573670 475 ntBASIC2.45□□□□□ -2.02
PTPN9P43378 MIR5007-201ENST00000583098 95 ntBASIC2.45□□□□□ -2.02
PTPN9P43378 AC046143.2-201ENST00000609789 160 ntBASIC2.45□□□□□ -2.02
PTPN9P43378 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC2.45□□□□□ -2.02
PTPN9P43378 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.45□□□□□ -2.02
PTPN9P43378 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
PTPN9P43378 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
PTPN9P43378 RNU6-874P-201ENST00000362390 105 ntBASIC2.44□□□□□ -2.02
PTPN9P43378 Y_RNA.106-201ENST00000363189 100 ntBASIC2.44□□□□□ -2.02
PTPN9P43378 RNU6-944P-201ENST00000364023 107 ntBASIC2.44□□□□□ -2.02
PTPN9P43378 RNA5SP125-201ENST00000364843 120 ntBASIC2.44□□□□□ -2.02
PTPN9P43378 XGY1-201ENST00000381172 446 ntBASIC2.44□□□□□ -2.02
PTPN9P43378 RNU6-1032P-201ENST00000384100 107 ntBASIC2.44□□□□□ -2.02
PTPN9P43378 RNU6-541P-201ENST00000384709 110 ntBASIC2.44□□□□□ -2.02
PTPN9P43378 SNORA80E-201ENST00000384744 137 ntBASIC2.44□□□□□ -2.02
PTPN9P43378 MIR561-201ENST00000385216 97 ntBASIC2.44□□□□□ -2.02
PTPN9P43378 SNORA69.1-201ENST00000390904 137 ntBASIC2.44□□□□□ -2.02
PTPN9P43378 RNU6-159P-201ENST00000391080 106 ntBASIC2.44□□□□□ -2.02
PTPN9P43378 AC007064.1-201ENST00000412238 351 ntBASIC2.44□□□□□ -2.02
PTPN9P43378 MRPS18CP6-201ENST00000423587 223 ntBASIC2.44□□□□□ -2.02
PTPN9P43378 USP9YP16-201ENST00000430287 407 ntBASIC2.44□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 93.9 ms