Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC1.63□□□□□ -2.15
SDC1P18827 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC1.63□□□□□ -2.15
SDC1P18827 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC1.63□□□□□ -2.15
SDC1P18827 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.63□□□□□ -2.15
SDC1P18827 MIR4299-201ENST00000577899 72 ntBASIC1.63□□□□□ -2.15
SDC1P18827 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC1.63□□□□□ -2.15
SDC1P18827 AC130454.1-201ENST00000622948 401 ntBASIC1.63□□□□□ -2.15
SDC1P18827 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC1.62□□□□□ -2.15
SDC1P18827 SNORD114-1-201ENST00000362705 72 ntBASIC1.62□□□□□ -2.15
SDC1P18827 SNORD31B-201ENST00000364977 69 ntBASIC1.62□□□□□ -2.15
SDC1P18827 RNA5SP126-201ENST00000365092 109 ntBASIC1.62□□□□□ -2.15
SDC1P18827 SNORA70B-201ENST00000384210 135 ntBASIC1.62□□□□□ -2.15
SDC1P18827 RNU6-306P-201ENST00000384617 107 ntBASIC1.62□□□□□ -2.15
SDC1P18827 MIR487A-201ENST00000385009 80 ntBASIC1.62□□□□□ -2.15
SDC1P18827 SNORA40.18-201ENST00000391200 128 ntBASIC1.62□□□□□ -2.15
SDC1P18827 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC1.62□□□□□ -2.15
SDC1P18827 RNA5SP501-201ENST00000410990 112 ntBASIC1.62□□□□□ -2.15
SDC1P18827 AL158823.1-201ENST00000418441 478 ntBASIC1.62□□□□□ -2.15
SDC1P18827 AL358453.1-201ENST00000422522 250 ntBASIC1.62□□□□□ -2.15
SDC1P18827 RPL31P63-201ENST00000422565 375 ntBASIC1.62□□□□□ -2.15
SDC1P18827 DAP3P1-201ENST00000441522 278 ntBASIC1.62□□□□□ -2.15
SDC1P18827 AL353572.1-201ENST00000442490 417 ntBASIC1.62□□□□□ -2.15
SDC1P18827 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.62□□□□□ -2.15
SDC1P18827 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.62□□□□□ -2.15
SDC1P18827 AC016925.1-201ENST00000458303 298 ntBASIC1.62□□□□□ -2.15
SDC1P18827 UBL5P3-201ENST00000475112 231 ntBASIC1.62□□□□□ -2.15
SDC1P18827 RPL23AP75-201ENST00000491601 451 ntBASIC1.62□□□□□ -2.15
SDC1P18827 AC069439.1-201ENST00000494739 167 ntBASIC1.62□□□□□ -2.15
SDC1P18827 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.62□□□□□ -2.15
SDC1P18827 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.62□□□□□ -2.15
SDC1P18827 POLR3GP2-201ENST00000588366 668 ntBASIC1.62□□□□□ -2.15
SDC1P18827 AC080078.2-201ENST00000603766 501 ntBASIC1.62□□□□□ -2.15
SDC1P18827 RPL17P51-201ENST00000605218 238 ntBASIC1.62□□□□□ -2.15
SDC1P18827 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC1.62□□□□□ -2.15
SDC1P18827 DLEU2_5.1-201ENST00000615567 84 ntBASIC1.62□□□□□ -2.15
SDC1P18827 AC002553.4-201ENST00000616896 331 ntBASIC1.62□□□□□ -2.15
SDC1P18827 MESTIT1_1.1-201ENST00000618871 140 ntBASIC1.62□□□□□ -2.15
SDC1P18827 AC084768.2-201ENST00000622736 221 ntBASIC1.62□□□□□ -2.15
SDC1P18827 RNU6-438P-201ENST00000365561 103 ntBASIC1.61□□□□□ -2.15
SDC1P18827 SNORA8-201ENST00000384574 139 ntBASIC1.61□□□□□ -2.15
SDC1P18827 MIR583-201ENST00000384846 75 ntBASIC1.61□□□□□ -2.15
SDC1P18827 AC004866.1-201ENST00000411748 78 ntBASIC1.61□□□□□ -2.15
SDC1P18827 AC139712.2-201ENST00000424302 339 ntBASIC1.61□□□□□ -2.15
SDC1P18827 AL035666.1-201ENST00000446195 348 ntBASIC1.61□□□□□ -2.15
SDC1P18827 OR2AQ1P-201ENST00000451972 200 ntBASIC1.61□□□□□ -2.15
SDC1P18827 RPS23P5-201ENST00000495419 428 ntBASIC1.61□□□□□ -2.15
SDC1P18827 RNU4-49P-201ENST00000516080 140 ntBASIC1.61□□□□□ -2.15
SDC1P18827 RNU1-41P-201ENST00000516161 162 ntBASIC1.61□□□□□ -2.15
SDC1P18827 RNU1-48P-201ENST00000516400 162 ntBASIC1.61□□□□□ -2.15
SDC1P18827 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.61□□□□□ -2.15
SDC1P18827 AP005639.2-201ENST00000527592 928 ntBASIC1.61□□□□□ -2.15
SDC1P18827 AC243960.4-201ENST00000600532 288 ntBASIC1.61□□□□□ -2.15
SDC1P18827 B3GNTL1P2-201ENST00000603673 288 ntBASIC1.61□□□□□ -2.15
SDC1P18827 AC124303.1-201ENST00000605703 360 ntBASIC1.61□□□□□ -2.15
SDC1P18827 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC1.61□□□□□ -2.15
SDC1P18827 AL773524.1-201ENST00000614065 229 ntBASIC1.61□□□□□ -2.15
SDC1P18827 AC005296.1-201ENST00000616145 209 ntBASIC1.61□□□□□ -2.15
SDC1P18827 AC005562.2-201ENST00000618264 111 ntBASIC1.61□□□□□ -2.15
SDC1P18827 AC022513.1-201ENST00000624512 117 ntBASIC1.61□□□□□ -2.15
SDC1P18827 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
SDC1P18827 Y_RNA.86-201ENST00000363020 111 ntBASIC1.6□□□□□ -2.15
SDC1P18827 U8.10-201ENST00000384260 133 ntBASIC1.6□□□□□ -2.15
SDC1P18827 NFU1P2-201ENST00000448700 469 ntBASIC1.6□□□□□ -2.15
SDC1P18827 RNU1-131P-201ENST00000458943 161 ntBASIC1.6□□□□□ -2.15
SDC1P18827 AC010531.2-201ENST00000465012 153 ntBASIC1.6□□□□□ -2.15
SDC1P18827 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC1.6□□□□□ -2.15
SDC1P18827 RNVU1-2-201ENST00000516326 135 ntBASIC1.6□□□□□ -2.15
SDC1P18827 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC1.6□□□□□ -2.15
SDC1P18827 AC010928.2-201ENST00000588017 287 ntBASIC1.6□□□□□ -2.15
SDC1P18827 AC018638.8-201ENST00000588755 281 ntBASIC1.6□□□□□ -2.15
SDC1P18827 CYP2C61P-201ENST00000604072 290 ntBASIC1.6□□□□□ -2.15
SDC1P18827 AC019193.3-201ENST00000609144 554 ntBASIC1.6□□□□□ -2.15
SDC1P18827 AC084782.3-201ENST00000612282 578 ntBASIC1.6□□□□□ -2.15
SDC1P18827 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC1.6□□□□□ -2.15
SDC1P18827 SCARNA4-201ENST00000629045 128 ntBASIC1.6□□□□□ -2.15
SDC1P18827 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.59□□□□□ -2.15
SDC1P18827 RNU6-545P-201ENST00000362681 104 ntBASIC1.59□□□□□ -2.15
SDC1P18827 Y_RNA.301-201ENST00000364990 103 ntBASIC1.59□□□□□ -2.15
SDC1P18827 RNU6-1026P-201ENST00000384465 108 ntBASIC1.59□□□□□ -2.15
SDC1P18827 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC1.59□□□□□ -2.15
SDC1P18827 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC1.59□□□□□ -2.15
SDC1P18827 RPL30P16-201ENST00000419341 429 ntBASIC1.59□□□□□ -2.15
SDC1P18827 AC244636.1-201ENST00000421152 228 ntBASIC1.59□□□□□ -2.15
SDC1P18827 EIF4EP2-201ENST00000422816 654 ntBASIC1.59□□□□□ -2.15
SDC1P18827 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC1.59□□□□□ -2.15
SDC1P18827 Z82188.1-201ENST00000436709 154 ntBASIC1.59□□□□□ -2.15
SDC1P18827 MTND4LP16-201ENST00000440828 295 ntBASIC1.59□□□□□ -2.15
SDC1P18827 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC1.59□□□□□ -2.15
SDC1P18827 AC004386.2-201ENST00000441858 148 ntBASIC1.59□□□□□ -2.15
SDC1P18827 MTCO1P44-201ENST00000441935 243 ntBASIC1.59□□□□□ -2.15
SDC1P18827 MTND1P17-201ENST00000448961 204 ntBASIC1.59□□□□□ -2.15
SDC1P18827 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC1.59□□□□□ -2.15
SDC1P18827 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC1.59□□□□□ -2.15
SDC1P18827 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.59□□□□□ -2.15
SDC1P18827 RPL23AP63-201ENST00000498752 471 ntBASIC1.59□□□□□ -2.15
SDC1P18827 ACA59.1-201ENST00000515966 143 ntBASIC1.59□□□□□ -2.15
SDC1P18827 RNA5SP454-201ENST00000517231 127 ntBASIC1.59□□□□□ -2.15
SDC1P18827 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC1.59□□□□□ -2.15
SDC1P18827 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC1.59□□□□□ -2.15
SDC1P18827 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC1.59□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 98.1 ms