Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 AC104581.2-201ENST00000572227 430 ntBASIC2.47□□□□□ -2.01
LDB3O75112 RPS15AP11-201ENST00000594193 385 ntBASIC2.47□□□□□ -2.01
LDB3O75112 RPS29P30-201ENST00000600975 111 ntBASIC2.47□□□□□ -2.01
LDB3O75112 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.47□□□□□ -2.01
LDB3O75112 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.47□□□□□ -2.01
LDB3O75112 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.47□□□□□ -2.01
LDB3O75112 IL33-202ENST00000417746 2327 ntTSL 2 BASIC2.46□□□□□ -2.02
LDB3O75112 AC080100.1-201ENST00000624239 5356 ntBASIC2.46□□□□□ -2.02
LDB3O75112 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC2.46□□□□□ -2.02
LDB3O75112 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
LDB3O75112 Y_RNA.16-201ENST00000362421 102 ntBASIC2.46□□□□□ -2.02
LDB3O75112 Y_RNA.84-201ENST00000363011 104 ntBASIC2.46□□□□□ -2.02
LDB3O75112 SNORD32A-201ENST00000364805 84 ntBASIC2.46□□□□□ -2.02
LDB3O75112 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.46□□□□□ -2.02
LDB3O75112 Y_RNA.518-201ENST00000384552 113 ntBASIC2.46□□□□□ -2.02
LDB3O75112 RNA5SP210-201ENST00000391034 120 ntBASIC2.46□□□□□ -2.02
LDB3O75112 AC063976.3-201ENST00000426849 329 ntBASIC2.46□□□□□ -2.02
LDB3O75112 AC092427.1-202ENST00000430569 476 ntBASIC2.46□□□□□ -2.02
LDB3O75112 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.46□□□□□ -2.02
LDB3O75112 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC2.46□□□□□ -2.02
LDB3O75112 RN7SKP210-201ENST00000459176 261 ntBASIC2.46□□□□□ -2.02
LDB3O75112 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC2.46□□□□□ -2.02
LDB3O75112 AC096725.1-201ENST00000514266 313 ntBASIC2.46□□□□□ -2.02
LDB3O75112 RN7SKP40-201ENST00000517211 242 ntBASIC2.46□□□□□ -2.02
LDB3O75112 IGHVII-53-1-201ENST00000519538 255 ntBASIC2.46□□□□□ -2.02
LDB3O75112 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.46□□□□□ -2.02
LDB3O75112 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC2.46□□□□□ -2.02
LDB3O75112 AP002770.2-201ENST00000543613 532 ntBASIC2.46□□□□□ -2.02
LDB3O75112 AL442163.3-201ENST00000554110 156 ntBASIC2.46□□□□□ -2.02
LDB3O75112 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC2.46□□□□□ -2.02
LDB3O75112 AC105137.2-201ENST00000569073 466 ntBASIC2.46□□□□□ -2.02
LDB3O75112 AC090616.3-201ENST00000582184 217 ntBASIC2.46□□□□□ -2.02
LDB3O75112 SDR42E1P4-201ENST00000620894 481 ntBASIC2.46□□□□□ -2.02
LDB3O75112 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.46□□□□□ -2.02
LDB3O75112 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
LDB3O75112 AC002543.1-201ENST00000299783 1954 ntBASIC2.46□□□□□ -2.02
LDB3O75112 AC009541.1-201ENST00000438279 2662 ntBASIC2.46□□□□□ -2.02
LDB3O75112 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.45□□□□□ -2.02
LDB3O75112 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
LDB3O75112 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.45□□□□□ -2.02
LDB3O75112 OR56A5-201ENST00000340110 738 ntBASIC2.45□□□□□ -2.02
LDB3O75112 Y_RNA.27-201ENST00000362540 103 ntBASIC2.45□□□□□ -2.02
LDB3O75112 RNU1-76P-201ENST00000362903 159 ntBASIC2.45□□□□□ -2.02
LDB3O75112 SNORD114-19-201ENST00000363072 75 ntBASIC2.45□□□□□ -2.02
LDB3O75112 Y_RNA.183-201ENST00000363882 113 ntBASIC2.45□□□□□ -2.02
LDB3O75112 SNORA36A-201ENST00000384221 132 ntBASIC2.45□□□□□ -2.02
LDB3O75112 Y_RNA.489-201ENST00000384410 101 ntBASIC2.45□□□□□ -2.02
LDB3O75112 Y_RNA.539-201ENST00000384635 107 ntBASIC2.45□□□□□ -2.02
LDB3O75112 MIR196B-201ENST00000384852 84 ntBASIC2.45□□□□□ -2.02
LDB3O75112 RNU6-1093P-201ENST00000391194 107 ntBASIC2.45□□□□□ -2.02
LDB3O75112 AL133475.1-201ENST00000404414 305 ntBASIC2.45□□□□□ -2.02
LDB3O75112 RNU6-1203P-201ENST00000410703 110 ntBASIC2.45□□□□□ -2.02
LDB3O75112 RNU6-1328P-201ENST00000410938 106 ntBASIC2.45□□□□□ -2.02
LDB3O75112 RNU2-25P-201ENST00000411041 191 ntBASIC2.45□□□□□ -2.02
LDB3O75112 RNA5SP184-201ENST00000411071 108 ntBASIC2.45□□□□□ -2.02
LDB3O75112 RNU6-847P-201ENST00000411115 108 ntBASIC2.45□□□□□ -2.02
LDB3O75112 AC009310.1-201ENST00000414414 451 ntBASIC2.45□□□□□ -2.02
LDB3O75112 MTCO3P19-201ENST00000415864 321 ntBASIC2.45□□□□□ -2.02
LDB3O75112 AL445305.1-201ENST00000432577 575 ntBASIC2.45□□□□□ -2.02
LDB3O75112 RPL39P29-201ENST00000447779 157 ntBASIC2.45□□□□□ -2.02
LDB3O75112 AL513124.1-201ENST00000450410 614 ntBASIC2.45□□□□□ -2.02
LDB3O75112 AP001324.2-201ENST00000461163 319 ntBASIC2.45□□□□□ -2.02
LDB3O75112 RPL30P12-201ENST00000474666 353 ntBASIC2.45□□□□□ -2.02
LDB3O75112 TRBVB-201ENST00000477100 408 ntBASIC2.45□□□□□ -2.02
LDB3O75112 RN7SL499P-201ENST00000481141 276 ntBASIC2.45□□□□□ -2.02
LDB3O75112 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.45□□□□□ -2.02
LDB3O75112 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC2.45□□□□□ -2.02
LDB3O75112 AC023824.2-201ENST00000566185 400 ntBASIC2.45□□□□□ -2.02
LDB3O75112 MIR3616-201ENST00000584070 92 ntBASIC2.45□□□□□ -2.02
LDB3O75112 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.45□□□□□ -2.02
LDB3O75112 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC2.45□□□□□ -2.02
LDB3O75112 MTND5P6-201ENST00000422338 1798 ntBASIC2.45□□□□□ -2.02
LDB3O75112 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.45□□□□□ -2.02
LDB3O75112 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC2.45□□□□□ -2.02
LDB3O75112 AL109809.4-201ENST00000603520 2185 ntBASIC2.44□□□□□ -2.02
LDB3O75112 AC233981.2-201ENST00000611524 1614 ntBASIC2.44□□□□□ -2.02
LDB3O75112 RNU6-1010P-201ENST00000362757 107 ntBASIC2.44□□□□□ -2.02
LDB3O75112 Y_RNA.143-201ENST00000363520 106 ntBASIC2.44□□□□□ -2.02
LDB3O75112 Y_RNA.237-201ENST00000364439 102 ntBASIC2.44□□□□□ -2.02
LDB3O75112 RNU6-1141P-201ENST00000364520 107 ntBASIC2.44□□□□□ -2.02
LDB3O75112 RNU6-318P-201ENST00000384283 103 ntBASIC2.44□□□□□ -2.02
LDB3O75112 RNU6-102P-201ENST00000384485 104 ntBASIC2.44□□□□□ -2.02
LDB3O75112 MIR634-201ENST00000385208 97 ntBASIC2.44□□□□□ -2.02
LDB3O75112 SNORA26.7-201ENST00000391288 122 ntBASIC2.44□□□□□ -2.02
LDB3O75112 AL079342.1-201ENST00000401460 267 ntBASIC2.44□□□□□ -2.02
LDB3O75112 RNU2-14P-201ENST00000411053 191 ntBASIC2.44□□□□□ -2.02
LDB3O75112 RNA5SP492-201ENST00000411330 114 ntBASIC2.44□□□□□ -2.02
LDB3O75112 AC138623.1-201ENST00000418060 216 ntBASIC2.44□□□□□ -2.02
LDB3O75112 RPL23AP95-201ENST00000426806 265 ntBASIC2.44□□□□□ -2.02
LDB3O75112 SDAD1P3-201ENST00000427380 333 ntBASIC2.44□□□□□ -2.02
LDB3O75112 MICF-203ENST00000432679 129 ntBASIC2.44□□□□□ -2.02
LDB3O75112 AL109933.2-201ENST00000452651 260 ntBASIC2.44□□□□□ -2.02
LDB3O75112 snoU13.30-201ENST00000458951 104 ntBASIC2.44□□□□□ -2.02
LDB3O75112 RPL36AP48-201ENST00000485521 314 ntBASIC2.44□□□□□ -2.02
LDB3O75112 SRIP1-201ENST00000489235 288 ntBASIC2.44□□□□□ -2.02
LDB3O75112 ANXA2P1-201ENST00000505539 926 ntBASIC2.44□□□□□ -2.02
LDB3O75112 RNU6-1023P-201ENST00000516137 106 ntBASIC2.44□□□□□ -2.02
LDB3O75112 RNU6-111P-201ENST00000517179 105 ntBASIC2.44□□□□□ -2.02
LDB3O75112 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC2.44□□□□□ -2.02
LDB3O75112 MIR4300-201ENST00000581016 96 ntBASIC2.44□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms