Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 U2.16-201ENST00000613119 191 ntBASIC4.41□□□□□ -1.7
COL17A1Q9UMD9 U2.12-201ENST00000613778 191 ntBASIC4.41□□□□□ -1.7
COL17A1Q9UMD9 U2.9-201ENST00000615427 191 ntBASIC4.41□□□□□ -1.7
COL17A1Q9UMD9 U2.11-201ENST00000616345 191 ntBASIC4.41□□□□□ -1.7
COL17A1Q9UMD9 U2.2-201ENST00000616535 191 ntBASIC4.41□□□□□ -1.7
COL17A1Q9UMD9 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC4.41□□□□□ -1.7
COL17A1Q9UMD9 U2.3-201ENST00000617785 191 ntBASIC4.41□□□□□ -1.7
COL17A1Q9UMD9 U2.19-201ENST00000618602 191 ntBASIC4.41□□□□□ -1.7
COL17A1Q9UMD9 RNU2-1-201ENST00000618664 191 ntBASIC4.41□□□□□ -1.7
COL17A1Q9UMD9 U2.6-201ENST00000619225 191 ntBASIC4.41□□□□□ -1.7
COL17A1Q9UMD9 U2.5-201ENST00000619465 191 ntBASIC4.41□□□□□ -1.7
COL17A1Q9UMD9 U2.10-201ENST00000620268 191 ntBASIC4.41□□□□□ -1.7
COL17A1Q9UMD9 snoZ196.1-201ENST00000625269 89 ntBASIC4.41□□□□□ -1.7
COL17A1Q9UMD9 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC4.41□□□□□ -1.7
COL17A1Q9UMD9 NEAT1-202ENST00000501122 22743 ntBASIC4.4□□□□□ -1.7
COL17A1Q9UMD9 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC4.4□□□□□ -1.7
COL17A1Q9UMD9 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.7
COL17A1Q9UMD9 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC4.4□□□□□ -1.7
COL17A1Q9UMD9 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
COL17A1Q9UMD9 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC4.4□□□□□ -1.71
COL17A1Q9UMD9 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
COL17A1Q9UMD9 RNU6-239P-201ENST00000390990 99 ntBASIC4.4□□□□□ -1.71
COL17A1Q9UMD9 AL138878.1-201ENST00000405131 347 ntBASIC4.4□□□□□ -1.71
COL17A1Q9UMD9 RNU6-1025P-201ENST00000410629 104 ntBASIC4.4□□□□□ -1.71
COL17A1Q9UMD9 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC4.4□□□□□ -1.71
COL17A1Q9UMD9 RPS27AP9-201ENST00000477681 438 ntBASIC4.4□□□□□ -1.71
COL17A1Q9UMD9 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC4.4□□□□□ -1.71
COL17A1Q9UMD9 MIR3921-201ENST00000577308 85 ntBASIC4.4□□□□□ -1.71
COL17A1Q9UMD9 AL133393.1-201ENST00000603277 287 ntBASIC4.4□□□□□ -1.71
COL17A1Q9UMD9 AC025946.2-201ENST00000603398 234 ntBASIC4.4□□□□□ -1.71
COL17A1Q9UMD9 AC009318.2-201ENST00000610917 651 ntBASIC4.4□□□□□ -1.71
COL17A1Q9UMD9 AC011603.4-201ENST00000611325 277 ntBASIC4.4□□□□□ -1.71
COL17A1Q9UMD9 U7.8-201ENST00000619968 63 ntBASIC4.4□□□□□ -1.71
COL17A1Q9UMD9 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
COL17A1Q9UMD9 AC108206.1-201ENST00000570186 4159 ntBASIC4.4□□□□□ -1.71
COL17A1Q9UMD9 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
COL17A1Q9UMD9 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
COL17A1Q9UMD9 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
COL17A1Q9UMD9 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC4.39□□□□□ -1.71
COL17A1Q9UMD9 RNU6-653P-201ENST00000363074 106 ntBASIC4.39□□□□□ -1.71
COL17A1Q9UMD9 MIR514A1-201ENST00000385133 98 ntBASIC4.39□□□□□ -1.71
COL17A1Q9UMD9 RPS12P23-201ENST00000419579 400 ntBASIC4.39□□□□□ -1.71
COL17A1Q9UMD9 AC092573.2-201ENST00000434546 243 ntBASIC4.39□□□□□ -1.71
COL17A1Q9UMD9 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC4.39□□□□□ -1.71
COL17A1Q9UMD9 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC4.39□□□□□ -1.71
COL17A1Q9UMD9 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC4.39□□□□□ -1.71
COL17A1Q9UMD9 AC104027.1-201ENST00000521887 300 ntBASIC4.39□□□□□ -1.71
COL17A1Q9UMD9 MIR5692C2-201ENST00000577959 77 ntBASIC4.39□□□□□ -1.71
COL17A1Q9UMD9 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC4.39□□□□□ -1.71
COL17A1Q9UMD9 AC006065.5-201ENST00000623427 349 ntBASIC4.39□□□□□ -1.71
COL17A1Q9UMD9 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
COL17A1Q9UMD9 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL17A1Q9UMD9 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC4.39□□□□□ -1.71
COL17A1Q9UMD9 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
COL17A1Q9UMD9 Y_RNA.226-201ENST00000364337 114 ntBASIC4.38□□□□□ -1.71
COL17A1Q9UMD9 Y_RNA.495-201ENST00000384435 112 ntBASIC4.38□□□□□ -1.71
COL17A1Q9UMD9 MIR521-1-201ENST00000384902 87 ntBASIC4.38□□□□□ -1.71
COL17A1Q9UMD9 SNORD78.2-201ENST00000391076 69 ntBASIC4.38□□□□□ -1.71
COL17A1Q9UMD9 RAB6C-AS1-202ENST00000433431 123 ntBASIC4.38□□□□□ -1.71
COL17A1Q9UMD9 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC4.38□□□□□ -1.71
COL17A1Q9UMD9 AL160314.1-201ENST00000490836 438 ntBASIC4.38□□□□□ -1.71
COL17A1Q9UMD9 AC022493.1-201ENST00000492984 337 ntBASIC4.38□□□□□ -1.71
COL17A1Q9UMD9 SUMO2P6-201ENST00000505273 288 ntBASIC4.38□□□□□ -1.71
COL17A1Q9UMD9 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC4.38□□□□□ -1.71
COL17A1Q9UMD9 RNA5SP291-201ENST00000517222 105 ntBASIC4.38□□□□□ -1.71
COL17A1Q9UMD9 UTP23-205ENST00000520733 369 ntTSL 3 BASIC4.38□□□□□ -1.71
COL17A1Q9UMD9 AP004371.1-201ENST00000525240 214 ntBASIC4.38□□□□□ -1.71
COL17A1Q9UMD9 CASP1P1-201ENST00000526345 212 ntBASIC4.38□□□□□ -1.71
COL17A1Q9UMD9 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC4.38□□□□□ -1.71
COL17A1Q9UMD9 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC4.38□□□□□ -1.71
COL17A1Q9UMD9 AC110491.1-201ENST00000562191 2010 ntBASIC4.38□□□□□ -1.71
COL17A1Q9UMD9 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
COL17A1Q9UMD9 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC4.38□□□□□ -1.71
COL17A1Q9UMD9 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
COL17A1Q9UMD9 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
COL17A1Q9UMD9 AL596211.1-201ENST00000569873 2277 ntBASIC4.37□□□□□ -1.71
COL17A1Q9UMD9 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
COL17A1Q9UMD9 Y_RNA.7-201ENST00000362352 102 ntBASIC4.37□□□□□ -1.71
COL17A1Q9UMD9 Y_RNA.116-201ENST00000363292 103 ntBASIC4.37□□□□□ -1.71
COL17A1Q9UMD9 Y_RNA.182-201ENST00000363880 111 ntBASIC4.37□□□□□ -1.71
COL17A1Q9UMD9 Z98742.3-201ENST00000418637 326 ntBASIC4.37□□□□□ -1.71
COL17A1Q9UMD9 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
COL17A1Q9UMD9 RNU7-121P-201ENST00000516604 62 ntBASIC4.37□□□□□ -1.71
COL17A1Q9UMD9 RNA5SP471-201ENST00000516971 106 ntBASIC4.37□□□□□ -1.71
COL17A1Q9UMD9 AL161798.1-201ENST00000604630 131 ntBASIC4.37□□□□□ -1.71
COL17A1Q9UMD9 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC4.37□□□□□ -1.71
COL17A1Q9UMD9 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL17A1Q9UMD9 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
COL17A1Q9UMD9 Y_RNA.75-201ENST00000362927 97 ntBASIC4.37□□□□□ -1.71
COL17A1Q9UMD9 Y_RNA.136-201ENST00000363444 102 ntBASIC4.37□□□□□ -1.71
COL17A1Q9UMD9 Y_RNA.245-201ENST00000364493 95 ntBASIC4.37□□□□□ -1.71
COL17A1Q9UMD9 RNU6-926P-201ENST00000384075 107 ntBASIC4.37□□□□□ -1.71
COL17A1Q9UMD9 AL358453.1-201ENST00000422522 250 ntBASIC4.37□□□□□ -1.71
COL17A1Q9UMD9 AL590383.1-201ENST00000428602 75 ntBASIC4.37□□□□□ -1.71
COL17A1Q9UMD9 AC005002.2-201ENST00000438228 269 ntBASIC4.37□□□□□ -1.71
COL17A1Q9UMD9 AC009237.7-201ENST00000447357 229 ntBASIC4.37□□□□□ -1.71
COL17A1Q9UMD9 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC4.37□□□□□ -1.71
COL17A1Q9UMD9 AC090616.3-201ENST00000582184 217 ntBASIC4.37□□□□□ -1.71
COL17A1Q9UMD9 AL645944.1-201ENST00000603857 493 ntBASIC4.37□□□□□ -1.71
COL17A1Q9UMD9 MIR3658-201ENST00000636291 56 ntBASIC4.37□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 124.4 ms