Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 RNU6-545P-201ENST00000362681 104 ntBASIC4.16□□□□□ -1.74
CCDC87Q9NVE4 RNU6-799P-201ENST00000363567 107 ntBASIC4.16□□□□□ -1.74
CCDC87Q9NVE4 SNORA18.3-201ENST00000384122 132 ntBASIC4.16□□□□□ -1.74
CCDC87Q9NVE4 CBX3P9-201ENST00000402326 552 ntBASIC4.16□□□□□ -1.74
CCDC87Q9NVE4 Z98941.1-201ENST00000407764 100 ntBASIC4.16□□□□□ -1.74
CCDC87Q9NVE4 RNU2-49P-201ENST00000410666 184 ntBASIC4.16□□□□□ -1.74
CCDC87Q9NVE4 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC4.16□□□□□ -1.74
CCDC87Q9NVE4 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC4.16□□□□□ -1.74
CCDC87Q9NVE4 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC4.16□□□□□ -1.74
CCDC87Q9NVE4 AL512605.2-201ENST00000592972 256 ntBASIC4.16□□□□□ -1.74
CCDC87Q9NVE4 AC013412.1-201ENST00000610687 192 ntBASIC4.16□□□□□ -1.74
CCDC87Q9NVE4 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC4.16□□□□□ -1.74
CCDC87Q9NVE4 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC4.16□□□□□ -1.74
CCDC87Q9NVE4 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC4.16□□□□□ -1.74
CCDC87Q9NVE4 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
CCDC87Q9NVE4 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
CCDC87Q9NVE4 AC007496.3-201ENST00000624987 3443 ntBASIC4.15□□□□□ -1.74
CCDC87Q9NVE4 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.74
CCDC87Q9NVE4 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC4.15□□□□□ -1.74
CCDC87Q9NVE4 RNA5SP295-201ENST00000362655 121 ntBASIC4.15□□□□□ -1.75
CCDC87Q9NVE4 RNU6-662P-201ENST00000384253 104 ntBASIC4.15□□□□□ -1.75
CCDC87Q9NVE4 Y_RNA.638-201ENST00000459374 113 ntBASIC4.15□□□□□ -1.75
CCDC87Q9NVE4 RN7SL93P-201ENST00000463035 293 ntBASIC4.15□□□□□ -1.75
CCDC87Q9NVE4 AC091179.3-201ENST00000474761 144 ntBASIC4.15□□□□□ -1.75
CCDC87Q9NVE4 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC4.15□□□□□ -1.75
CCDC87Q9NVE4 AC027176.1-201ENST00000560204 514 ntBASIC4.15□□□□□ -1.75
CCDC87Q9NVE4 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC4.15□□□□□ -1.75
CCDC87Q9NVE4 AC025281.1-201ENST00000567026 265 ntBASIC4.15□□□□□ -1.75
CCDC87Q9NVE4 MIR2682-201ENST00000580305 110 ntBASIC4.15□□□□□ -1.75
CCDC87Q9NVE4 AL391813.1-201ENST00000603098 260 ntBASIC4.15□□□□□ -1.75
CCDC87Q9NVE4 AC072026.1-201ENST00000605023 201 ntBASIC4.15□□□□□ -1.75
CCDC87Q9NVE4 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC4.15□□□□□ -1.75
CCDC87Q9NVE4 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC4.15□□□□□ -1.75
CCDC87Q9NVE4 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
CCDC87Q9NVE4 AL136164.4-201ENST00000625013 2135 ntBASIC4.15□□□□□ -1.75
CCDC87Q9NVE4 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC4.14□□□□□ -1.75
CCDC87Q9NVE4 RNU6-1020P-201ENST00000363684 107 ntBASIC4.14□□□□□ -1.75
CCDC87Q9NVE4 Y_RNA.418-201ENST00000384029 102 ntBASIC4.14□□□□□ -1.75
CCDC87Q9NVE4 RNU6-746P-201ENST00000384112 109 ntBASIC4.14□□□□□ -1.75
CCDC87Q9NVE4 SNORA7.4-201ENST00000384249 137 ntBASIC4.14□□□□□ -1.75
CCDC87Q9NVE4 PCNPP3-201ENST00000393579 471 ntBASIC4.14□□□□□ -1.75
CCDC87Q9NVE4 RNU6-1140P-201ENST00000410517 106 ntBASIC4.14□□□□□ -1.75
CCDC87Q9NVE4 RPL19P1-201ENST00000411635 428 ntBASIC4.14□□□□□ -1.75
CCDC87Q9NVE4 RAB28P5-201ENST00000427490 651 ntBASIC4.14□□□□□ -1.75
CCDC87Q9NVE4 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC4.14□□□□□ -1.75
CCDC87Q9NVE4 IFNA11P-201ENST00000446352 526 ntBASIC4.14□□□□□ -1.75
CCDC87Q9NVE4 AC008885.1-201ENST00000514930 301 ntBASIC4.14□□□□□ -1.75
CCDC87Q9NVE4 uc_338.32-201ENST00000615087 172 ntBASIC4.14□□□□□ -1.75
CCDC87Q9NVE4 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC4.14□□□□□ -1.75
CCDC87Q9NVE4 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
CCDC87Q9NVE4 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC4.13□□□□□ -1.75
CCDC87Q9NVE4 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
CCDC87Q9NVE4 ANKRD30BP1-201ENST00000451052 2186 ntBASIC4.13□□□□□ -1.75
CCDC87Q9NVE4 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
CCDC87Q9NVE4 RNU6-529P-201ENST00000363383 104 ntBASIC4.13□□□□□ -1.75
CCDC87Q9NVE4 RNU6-1248P-201ENST00000391096 64 ntBASIC4.13□□□□□ -1.75
CCDC87Q9NVE4 AC126124.2-201ENST00000413542 321 ntBASIC4.13□□□□□ -1.75
CCDC87Q9NVE4 HMGN2P7-201ENST00000456186 273 ntBASIC4.13□□□□□ -1.75
CCDC87Q9NVE4 RNU6-1212P-201ENST00000517023 104 ntBASIC4.13□□□□□ -1.75
CCDC87Q9NVE4 MIR3945-201ENST00000581853 98 ntBASIC4.13□□□□□ -1.75
CCDC87Q9NVE4 AC012531.5-201ENST00000611375 151 ntBASIC4.13□□□□□ -1.75
CCDC87Q9NVE4 PCGEM1.1-201ENST00000613431 131 ntBASIC4.13□□□□□ -1.75
CCDC87Q9NVE4 AC073349.3-201ENST00000617616 186 ntBASIC4.13□□□□□ -1.75
CCDC87Q9NVE4 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
CCDC87Q9NVE4 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC4.12□□□□□ -1.75
CCDC87Q9NVE4 AC092593.1-201ENST00000515413 1815 ntBASIC4.12□□□□□ -1.75
CCDC87Q9NVE4 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC87Q9NVE4 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC87Q9NVE4 RNU6-1289P-201ENST00000384431 106 ntBASIC4.12□□□□□ -1.75
CCDC87Q9NVE4 RNA5SP201-201ENST00000410316 124 ntBASIC4.12□□□□□ -1.75
CCDC87Q9NVE4 ELOCP21-201ENST00000412558 336 ntBASIC4.12□□□□□ -1.75
CCDC87Q9NVE4 MRPS10P1-201ENST00000448483 130 ntBASIC4.12□□□□□ -1.75
CCDC87Q9NVE4 RPS4XP2-201ENST00000458402 793 ntBASIC4.12□□□□□ -1.75
CCDC87Q9NVE4 SNORD2.1-201ENST00000458762 69 ntBASIC4.12□□□□□ -1.75
CCDC87Q9NVE4 RPL23AP67-201ENST00000465341 474 ntBASIC4.12□□□□□ -1.75
CCDC87Q9NVE4 AC107393.1-201ENST00000512403 346 ntBASIC4.12□□□□□ -1.75
CCDC87Q9NVE4 SNORD116-28-201ENST00000516123 91 ntBASIC4.12□□□□□ -1.75
CCDC87Q9NVE4 RNU6-406P-201ENST00000516470 107 ntBASIC4.12□□□□□ -1.75
CCDC87Q9NVE4 SNORA31.21-201ENST00000517180 77 ntBASIC4.12□□□□□ -1.75
CCDC87Q9NVE4 EIF4A1P12-201ENST00000551910 141 ntBASIC4.12□□□□□ -1.75
CCDC87Q9NVE4 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC4.12□□□□□ -1.75
CCDC87Q9NVE4 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC4.12□□□□□ -1.75
CCDC87Q9NVE4 UBL5P2-201ENST00000583788 219 ntBASIC4.12□□□□□ -1.75
CCDC87Q9NVE4 uc_338.14-201ENST00000613162 166 ntBASIC4.12□□□□□ -1.75
CCDC87Q9NVE4 MIR6715A-201ENST00000615929 79 ntBASIC4.12□□□□□ -1.75
CCDC87Q9NVE4 AC135776.4-201ENST00000624300 1904 ntBASIC4.12□□□□□ -1.75
CCDC87Q9NVE4 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC4.12□□□□□ -1.75
CCDC87Q9NVE4 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC4.12□□□□□ -1.75
CCDC87Q9NVE4 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC87Q9NVE4 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC4.12□□□□□ -1.75
CCDC87Q9NVE4 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
CCDC87Q9NVE4 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC87Q9NVE4 AL133475.1-201ENST00000404414 305 ntBASIC4.11□□□□□ -1.75
CCDC87Q9NVE4 RNA5SP475-201ENST00000410568 110 ntBASIC4.11□□□□□ -1.75
CCDC87Q9NVE4 RNA5SP229-201ENST00000410809 99 ntBASIC4.11□□□□□ -1.75
CCDC87Q9NVE4 AIMP1P2-201ENST00000425294 312 ntBASIC4.11□□□□□ -1.75
CCDC87Q9NVE4 AL121594.1-201ENST00000475906 575 ntBASIC4.11□□□□□ -1.75
CCDC87Q9NVE4 AC103975.1-201ENST00000482506 483 ntBASIC4.11□□□□□ -1.75
CCDC87Q9NVE4 RPL7P47-201ENST00000497299 556 ntBASIC4.11□□□□□ -1.75
CCDC87Q9NVE4 SNORA31.1-201ENST00000515993 133 ntBASIC4.11□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 110.5 ms