Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.01□□□□□ -1.93
TDP1Q9NUW8 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
TDP1Q9NUW8 ZNF204P-201ENST00000416749 2397 ntBASIC3.01□□□□□ -1.93
TDP1Q9NUW8 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.01□□□□□ -1.93
TDP1Q9NUW8 RNA5SP383-201ENST00000362934 120 ntBASIC3.01□□□□□ -1.93
TDP1Q9NUW8 Y_RNA.214-201ENST00000364201 112 ntBASIC3.01□□□□□ -1.93
TDP1Q9NUW8 Y_RNA.276-201ENST00000364732 109 ntBASIC3.01□□□□□ -1.93
TDP1Q9NUW8 RNU6-805P-201ENST00000365643 106 ntBASIC3.01□□□□□ -1.93
TDP1Q9NUW8 RNA5SP293-201ENST00000410527 113 ntBASIC3.01□□□□□ -1.93
TDP1Q9NUW8 ELOCP20-201ENST00000422460 345 ntBASIC3.01□□□□□ -1.93
TDP1Q9NUW8 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC3.01□□□□□ -1.93
TDP1Q9NUW8 AC087499.2-201ENST00000432861 149 ntBASIC3.01□□□□□ -1.93
TDP1Q9NUW8 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC3.01□□□□□ -1.93
TDP1Q9NUW8 AC067942.3-201ENST00000512025 362 ntBASIC3.01□□□□□ -1.93
TDP1Q9NUW8 RNU6-1012P-201ENST00000516606 109 ntBASIC3.01□□□□□ -1.93
TDP1Q9NUW8 RNU6-897P-201ENST00000517135 105 ntBASIC3.01□□□□□ -1.93
TDP1Q9NUW8 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC3.01□□□□□ -1.93
TDP1Q9NUW8 MIR3162-201ENST00000581818 82 ntBASIC3.01□□□□□ -1.93
TDP1Q9NUW8 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC3.01□□□□□ -1.93
TDP1Q9NUW8 MIR4298-201ENST00000584380 73 ntBASIC3.01□□□□□ -1.93
TDP1Q9NUW8 RPL30P11-203ENST00000598995 310 ntBASIC3.01□□□□□ -1.93
TDP1Q9NUW8 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC3.01□□□□□ -1.93
TDP1Q9NUW8 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.01□□□□□ -1.93
TDP1Q9NUW8 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC3□□□□□ -1.93
TDP1Q9NUW8 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3□□□□□ -1.93
TDP1Q9NUW8 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3□□□□□ -1.93
TDP1Q9NUW8 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3□□□□□ -1.93
TDP1Q9NUW8 RNU6-873P-201ENST00000363833 107 ntBASIC3□□□□□ -1.93
TDP1Q9NUW8 SNORA68.1-201ENST00000364537 132 ntBASIC3□□□□□ -1.93
TDP1Q9NUW8 Y_RNA.512-201ENST00000384518 102 ntBASIC3□□□□□ -1.93
TDP1Q9NUW8 SNORD78.2-201ENST00000391076 69 ntBASIC3□□□□□ -1.93
TDP1Q9NUW8 RNA5SP184-201ENST00000411071 108 ntBASIC3□□□□□ -1.93
TDP1Q9NUW8 RNU6-1001P-201ENST00000411265 100 ntBASIC3□□□□□ -1.93
TDP1Q9NUW8 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC3□□□□□ -1.93
TDP1Q9NUW8 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC3□□□□□ -1.93
TDP1Q9NUW8 RPS27P29-201ENST00000463110 252 ntBASIC3□□□□□ -1.93
TDP1Q9NUW8 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC3□□□□□ -1.93
TDP1Q9NUW8 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC3□□□□□ -1.93
TDP1Q9NUW8 AC026241.1-201ENST00000517873 2142 ntBASIC3□□□□□ -1.93
TDP1Q9NUW8 TEX41-243ENST00000614173 190 ntTSL 5 BASIC3□□□□□ -1.93
TDP1Q9NUW8 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC3□□□□□ -1.93
TDP1Q9NUW8 BX322639.1-202ENST00000423987 2213 ntBASIC3□□□□□ -1.93
TDP1Q9NUW8 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3□□□□□ -1.93
TDP1Q9NUW8 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3□□□□□ -1.93
TDP1Q9NUW8 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3□□□□□ -1.93
TDP1Q9NUW8 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC3□□□□□ -1.93
TDP1Q9NUW8 AC069528.2-201ENST00000624849 1991 ntBASIC3□□□□□ -1.93
TDP1Q9NUW8 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC2.99□□□□□ -1.93
TDP1Q9NUW8 RNU6-280P-201ENST00000364145 104 ntBASIC2.99□□□□□ -1.93
TDP1Q9NUW8 SNORD21-201ENST00000383953 95 ntBASIC2.99□□□□□ -1.93
TDP1Q9NUW8 SNORA46.1-201ENST00000391069 153 ntBASIC2.99□□□□□ -1.93
TDP1Q9NUW8 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC2.99□□□□□ -1.93
TDP1Q9NUW8 RPL30P4-201ENST00000429309 333 ntBASIC2.99□□□□□ -1.93
TDP1Q9NUW8 MICF-203ENST00000432679 129 ntBASIC2.99□□□□□ -1.93
TDP1Q9NUW8 AC112220.1-201ENST00000434628 355 ntBASIC2.99□□□□□ -1.93
TDP1Q9NUW8 DYNLT3P2-201ENST00000442517 295 ntBASIC2.99□□□□□ -1.93
TDP1Q9NUW8 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC2.99□□□□□ -1.93
TDP1Q9NUW8 AC073901.1-201ENST00000462471 408 ntBASIC2.99□□□□□ -1.93
TDP1Q9NUW8 AC103975.1-201ENST00000482506 483 ntBASIC2.99□□□□□ -1.93
TDP1Q9NUW8 AC140059.1-201ENST00000489238 361 ntBASIC2.99□□□□□ -1.93
TDP1Q9NUW8 EIF4A1P12-201ENST00000551910 141 ntBASIC2.99□□□□□ -1.93
TDP1Q9NUW8 AC027176.1-201ENST00000560204 514 ntBASIC2.99□□□□□ -1.93
TDP1Q9NUW8 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC2.99□□□□□ -1.93
TDP1Q9NUW8 MIR4319-201ENST00000577285 85 ntBASIC2.99□□□□□ -1.93
TDP1Q9NUW8 AC240442.1-201ENST00000616055 283 ntBASIC2.99□□□□□ -1.93
TDP1Q9NUW8 AC010205.1-201ENST00000616668 449 ntBASIC2.99□□□□□ -1.93
TDP1Q9NUW8 ANKRD36BP1-201ENST00000358576 1779 ntBASIC2.99□□□□□ -1.93
TDP1Q9NUW8 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
TDP1Q9NUW8 AC010329.5-201ENST00000623497 2174 ntBASIC2.98□□□□□ -1.93
TDP1Q9NUW8 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC2.98□□□□□ -1.93
TDP1Q9NUW8 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC2.98□□□□□ -1.93
TDP1Q9NUW8 MIR148B-201ENST00000362252 99 ntBASIC2.98□□□□□ -1.93
TDP1Q9NUW8 RNU1-72P-201ENST00000362976 153 ntBASIC2.98□□□□□ -1.93
TDP1Q9NUW8 U3.9-201ENST00000363823 204 ntBASIC2.98□□□□□ -1.93
TDP1Q9NUW8 RNU6-611P-201ENST00000384276 104 ntBASIC2.98□□□□□ -1.93
TDP1Q9NUW8 MIR329-1-201ENST00000385028 80 ntBASIC2.98□□□□□ -1.93
TDP1Q9NUW8 MIR1302-3-201ENST00000408128 138 ntBASIC2.98□□□□□ -1.93
TDP1Q9NUW8 IPO7P1-201ENST00000442031 636 ntBASIC2.98□□□□□ -1.93
TDP1Q9NUW8 RN7SL633P-201ENST00000488974 297 ntBASIC2.98□□□□□ -1.93
TDP1Q9NUW8 RNY3P15-201ENST00000516297 97 ntBASIC2.98□□□□□ -1.93
TDP1Q9NUW8 SNORA25.14-201ENST00000516481 132 ntBASIC2.98□□□□□ -1.93
TDP1Q9NUW8 RN7SKP49-201ENST00000516675 260 ntBASIC2.98□□□□□ -1.93
TDP1Q9NUW8 RN7SKP282-201ENST00000516824 299 ntBASIC2.98□□□□□ -1.93
TDP1Q9NUW8 SNORA40.15-201ENST00000516884 107 ntBASIC2.98□□□□□ -1.93
TDP1Q9NUW8 AC068657.1-201ENST00000520807 306 ntBASIC2.98□□□□□ -1.93
TDP1Q9NUW8 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC2.98□□□□□ -1.93
TDP1Q9NUW8 MIR4659A-201ENST00000580269 81 ntBASIC2.98□□□□□ -1.93
TDP1Q9NUW8 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.98□□□□□ -1.93
TDP1Q9NUW8 AC010620.2-201ENST00000600135 313 ntBASIC2.98□□□□□ -1.93
TDP1Q9NUW8 AL356575.1-201ENST00000603008 283 ntBASIC2.98□□□□□ -1.93
TDP1Q9NUW8 AL670379.2-201ENST00000604983 252 ntBASIC2.98□□□□□ -1.93
TDP1Q9NUW8 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.98□□□□□ -1.93
TDP1Q9NUW8 AC011476.5-201ENST00000615594 130 ntBASIC2.98□□□□□ -1.93
TDP1Q9NUW8 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
TDP1Q9NUW8 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
TDP1Q9NUW8 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
TDP1Q9NUW8 AC062016.1-201ENST00000355719 319 ntBASIC2.97□□□□□ -1.93
TDP1Q9NUW8 Y_RNA.26-201ENST00000362539 101 ntBASIC2.97□□□□□ -1.93
TDP1Q9NUW8 RNU6-770P-201ENST00000363929 105 ntBASIC2.97□□□□□ -1.93
TDP1Q9NUW8 RNU6-806P-201ENST00000365147 105 ntBASIC2.97□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 112.9 ms