Protein–RNA interactions for Protein: Q9NT62

ATG3, Ubiquitin-like-conjugating enzyme ATG3, humanhuman

Predictions only

Length 314 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG3Q9NT62 NDUFB4P6-201ENST00000436819 366 ntBASIC4.12□□□□□ -1.75
ATG3Q9NT62 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
ATG3Q9NT62 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC4.12□□□□□ -1.75
ATG3Q9NT62 RPL23AP62-201ENST00000463396 453 ntBASIC4.12□□□□□ -1.75
ATG3Q9NT62 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC4.12□□□□□ -1.75
ATG3Q9NT62 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC4.12□□□□□ -1.75
ATG3Q9NT62 RPL12P50-201ENST00000603116 116 ntBASIC4.12□□□□□ -1.75
ATG3Q9NT62 AL008718.3-201ENST00000610217 321 ntBASIC4.12□□□□□ -1.75
ATG3Q9NT62 AF117829.1-206ENST00000621883 3802 ntBASIC4.12□□□□□ -1.75
ATG3Q9NT62 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC4.12□□□□□ -1.75
ATG3Q9NT62 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
ATG3Q9NT62 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
ATG3Q9NT62 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
ATG3Q9NT62 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC4.12□□□□□ -1.75
ATG3Q9NT62 BCLAF1P1-201ENST00000505813 2752 ntBASIC4.12□□□□□ -1.75
ATG3Q9NT62 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
ATG3Q9NT62 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
ATG3Q9NT62 ZNF204P-201ENST00000416749 2397 ntBASIC4.11□□□□□ -1.75
ATG3Q9NT62 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
ATG3Q9NT62 RNA5SP295-201ENST00000362655 121 ntBASIC4.11□□□□□ -1.75
ATG3Q9NT62 Y_RNA.71-201ENST00000362892 104 ntBASIC4.11□□□□□ -1.75
ATG3Q9NT62 Y_RNA.127-201ENST00000363386 109 ntBASIC4.11□□□□□ -1.75
ATG3Q9NT62 Y_RNA.230-201ENST00000364348 109 ntBASIC4.11□□□□□ -1.75
ATG3Q9NT62 Y_RNA.245-201ENST00000364493 95 ntBASIC4.11□□□□□ -1.75
ATG3Q9NT62 RNU6-312P-201ENST00000364629 107 ntBASIC4.11□□□□□ -1.75
ATG3Q9NT62 RNU6-1325P-201ENST00000364905 105 ntBASIC4.11□□□□□ -1.75
ATG3Q9NT62 U8.10-201ENST00000384260 133 ntBASIC4.11□□□□□ -1.75
ATG3Q9NT62 RNU6-72P-201ENST00000384285 79 ntBASIC4.11□□□□□ -1.75
ATG3Q9NT62 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
ATG3Q9NT62 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC4.11□□□□□ -1.75
ATG3Q9NT62 MTND4LP9-201ENST00000427694 174 ntBASIC4.11□□□□□ -1.75
ATG3Q9NT62 RPS15AP5-201ENST00000436276 388 ntBASIC4.11□□□□□ -1.75
ATG3Q9NT62 CR769767.1-201ENST00000436337 346 ntBASIC4.11□□□□□ -1.75
ATG3Q9NT62 TEX41-209ENST00000451478 452 ntTSL 2 BASIC4.11□□□□□ -1.75
ATG3Q9NT62 RPS27P26-201ENST00000494583 239 ntBASIC4.11□□□□□ -1.75
ATG3Q9NT62 RNU6-1333P-201ENST00000516162 93 ntBASIC4.11□□□□□ -1.75
ATG3Q9NT62 RNU6-1256P-201ENST00000516539 103 ntBASIC4.11□□□□□ -1.75
ATG3Q9NT62 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC4.11□□□□□ -1.75
ATG3Q9NT62 MIR3145-201ENST00000580727 82 ntBASIC4.11□□□□□ -1.75
ATG3Q9NT62 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC4.11□□□□□ -1.75
ATG3Q9NT62 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC4.11□□□□□ -1.75
ATG3Q9NT62 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC4.11□□□□□ -1.75
ATG3Q9NT62 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC4.11□□□□□ -1.75
ATG3Q9NT62 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
ATG3Q9NT62 AC010332.2-201ENST00000613083 1904 ntBASIC4.11□□□□□ -1.75
ATG3Q9NT62 CPD-202ENST00000543464 4007 ntTSL 2 BASIC4.11□□□□□ -1.75
ATG3Q9NT62 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC4.1□□□□□ -1.75
ATG3Q9NT62 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC4.1□□□□□ -1.75
ATG3Q9NT62 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC4.1□□□□□ -1.75
ATG3Q9NT62 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
ATG3Q9NT62 Y_RNA.7-201ENST00000362352 102 ntBASIC4.1□□□□□ -1.75
ATG3Q9NT62 RNU6-1298P-201ENST00000362456 101 ntBASIC4.1□□□□□ -1.75
ATG3Q9NT62 Y_RNA.23-201ENST00000362496 106 ntBASIC4.1□□□□□ -1.75
ATG3Q9NT62 RNU4-80P-201ENST00000363200 141 ntBASIC4.1□□□□□ -1.75
ATG3Q9NT62 SNORA29-201ENST00000384183 140 ntBASIC4.1□□□□□ -1.75
ATG3Q9NT62 RN7SKP220-201ENST00000410611 288 ntBASIC4.1□□□□□ -1.75
ATG3Q9NT62 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC4.1□□□□□ -1.75
ATG3Q9NT62 AL078601.1-201ENST00000444542 271 ntBASIC4.1□□□□□ -1.75
ATG3Q9NT62 RNA5SP310-201ENST00000459084 116 ntBASIC4.1□□□□□ -1.75
ATG3Q9NT62 RPS27AP9-201ENST00000477681 438 ntBASIC4.1□□□□□ -1.75
ATG3Q9NT62 RN7SL429P-201ENST00000479090 223 ntBASIC4.1□□□□□ -1.75
ATG3Q9NT62 RN7SL489P-201ENST00000486185 223 ntBASIC4.1□□□□□ -1.75
ATG3Q9NT62 RN7SL327P-201ENST00000488659 223 ntBASIC4.1□□□□□ -1.75
ATG3Q9NT62 RNU6-191P-201ENST00000516295 94 ntBASIC4.1□□□□□ -1.75
ATG3Q9NT62 RNU6-1234P-201ENST00000516877 103 ntBASIC4.1□□□□□ -1.75
ATG3Q9NT62 AC107934.2-201ENST00000518653 310 ntBASIC4.1□□□□□ -1.75
ATG3Q9NT62 AC022441.3-201ENST00000605737 136 ntBASIC4.1□□□□□ -1.75
ATG3Q9NT62 RN7SL853P-201ENST00000617250 223 ntBASIC4.1□□□□□ -1.75
ATG3Q9NT62 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
ATG3Q9NT62 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.75
ATG3Q9NT62 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
ATG3Q9NT62 Y_RNA.75-201ENST00000362927 97 ntBASIC4.09□□□□□ -1.75
ATG3Q9NT62 RNU6-1197P-201ENST00000391183 107 ntBASIC4.09□□□□□ -1.75
ATG3Q9NT62 AL390729.2-201ENST00000416137 156 ntBASIC4.09□□□□□ -1.75
ATG3Q9NT62 RPL23AP82-202ENST00000427528 469 ntBASIC4.09□□□□□ -1.75
ATG3Q9NT62 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC4.09□□□□□ -1.75
ATG3Q9NT62 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC4.09□□□□□ -1.75
ATG3Q9NT62 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC4.09□□□□□ -1.75
ATG3Q9NT62 AL137159.1-201ENST00000452808 512 ntBASIC4.09□□□□□ -1.75
ATG3Q9NT62 CENPBD1P1-201ENST00000464061 469 ntBASIC4.09□□□□□ -1.75
ATG3Q9NT62 RNA5SP290-201ENST00000517133 127 ntBASIC4.09□□□□□ -1.75
ATG3Q9NT62 DEFB131C-201ENST00000528817 165 ntBASIC4.09□□□□□ -1.75
ATG3Q9NT62 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
ATG3Q9NT62 AC112693.2-201ENST00000556538 232 ntBASIC4.09□□□□□ -1.75
ATG3Q9NT62 TGIF1P1-201ENST00000558095 802 ntBASIC4.09□□□□□ -1.75
ATG3Q9NT62 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC4.09□□□□□ -1.75
ATG3Q9NT62 AC005176.2-201ENST00000596933 147 ntBASIC4.09□□□□□ -1.75
ATG3Q9NT62 AL359881.1-201ENST00000602916 267 ntBASIC4.09□□□□□ -1.75
ATG3Q9NT62 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC4.09□□□□□ -1.75
ATG3Q9NT62 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC4.09□□□□□ -1.75
ATG3Q9NT62 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
ATG3Q9NT62 AL136164.4-201ENST00000625013 2135 ntBASIC4.09□□□□□ -1.76
ATG3Q9NT62 CUL1P1-201ENST00000509510 2425 ntBASIC4.09□□□□□ -1.76
ATG3Q9NT62 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC4.08□□□□□ -1.76
ATG3Q9NT62 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
ATG3Q9NT62 Y_RNA.182-201ENST00000363880 111 ntBASIC4.08□□□□□ -1.76
ATG3Q9NT62 RNU6-541P-201ENST00000384709 110 ntBASIC4.08□□□□□ -1.76
ATG3Q9NT62 SNORA40-201ENST00000388090 126 ntBASIC4.08□□□□□ -1.76
ATG3Q9NT62 RNU6-159P-201ENST00000391080 106 ntBASIC4.08□□□□□ -1.76
ATG3Q9NT62 RAB28P5-201ENST00000427490 651 ntBASIC4.08□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms