Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 AC004386.2-201ENST00000441858 148 ntBASIC0.81□□□□□ -2.28
VCX3AQ9NNX9 SNRPFP4-201ENST00000456366 242 ntBASIC0.81□□□□□ -2.28
VCX3AQ9NNX9 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC0.81□□□□□ -2.28
VCX3AQ9NNX9 AC116337.1-201ENST00000509680 687 ntBASIC0.81□□□□□ -2.28
VCX3AQ9NNX9 SNORA31.10-201ENST00000516482 106 ntBASIC0.81□□□□□ -2.28
VCX3AQ9NNX9 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC0.81□□□□□ -2.28
VCX3AQ9NNX9 AC136932.1-201ENST00000574771 208 ntBASIC0.81□□□□□ -2.28
VCX3AQ9NNX9 MIR5006-201ENST00000583027 110 ntBASIC0.81□□□□□ -2.28
VCX3AQ9NNX9 BNIP3P39-201ENST00000601077 554 ntBASIC0.81□□□□□ -2.28
VCX3AQ9NNX9 Z99497.2-201ENST00000603634 310 ntBASIC0.81□□□□□ -2.28
VCX3AQ9NNX9 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC0.81□□□□□ -2.28
VCX3AQ9NNX9 RNU6-85P-201ENST00000605989 107 ntBASIC0.81□□□□□ -2.28
VCX3AQ9NNX9 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC0.81□□□□□ -2.28
VCX3AQ9NNX9 AC009541.1-201ENST00000438279 2662 ntBASIC0.81□□□□□ -2.28
VCX3AQ9NNX9 Y_RNA.500-201ENST00000384466 111 ntBASIC0.8□□□□□ -2.28
VCX3AQ9NNX9 MIR19B1-201ENST00000384829 87 ntBASIC0.8□□□□□ -2.28
VCX3AQ9NNX9 MIR549A-201ENST00000385268 96 ntBASIC0.8□□□□□ -2.28
VCX3AQ9NNX9 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.8□□□□□ -2.28
VCX3AQ9NNX9 AC004866.1-201ENST00000411748 78 ntBASIC0.8□□□□□ -2.28
VCX3AQ9NNX9 SNRPEP10-201ENST00000420249 274 ntBASIC0.8□□□□□ -2.28
VCX3AQ9NNX9 RAB28P5-201ENST00000427490 651 ntBASIC0.8□□□□□ -2.28
VCX3AQ9NNX9 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC0.8□□□□□ -2.28
VCX3AQ9NNX9 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC0.8□□□□□ -2.28
VCX3AQ9NNX9 AC092991.1-201ENST00000477176 376 ntBASIC0.8□□□□□ -2.28
VCX3AQ9NNX9 SRP72-202ENST00000504757 745 ntTSL 2 BASIC0.8□□□□□ -2.28
VCX3AQ9NNX9 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC0.8□□□□□ -2.28
VCX3AQ9NNX9 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC0.8□□□□□ -2.28
VCX3AQ9NNX9 RNU6-1129P-201ENST00000515964 104 ntBASIC0.8□□□□□ -2.28
VCX3AQ9NNX9 RN7SKP49-201ENST00000516675 260 ntBASIC0.8□□□□□ -2.28
VCX3AQ9NNX9 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC0.8□□□□□ -2.28
VCX3AQ9NNX9 MIR5695-201ENST00000579717 85 ntBASIC0.8□□□□□ -2.28
VCX3AQ9NNX9 MIR4661-201ENST00000582720 75 ntBASIC0.8□□□□□ -2.28
VCX3AQ9NNX9 AL021879.1-201ENST00000611756 288 ntBASIC0.8□□□□□ -2.28
VCX3AQ9NNX9 uc_338.11-201ENST00000619132 160 ntBASIC0.8□□□□□ -2.28
VCX3AQ9NNX9 AL133216.2-202ENST00000634512 349 ntBASIC0.8□□□□□ -2.28
VCX3AQ9NNX9 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC0.79□□□□□ -2.28
VCX3AQ9NNX9 RNU1-36P-201ENST00000365130 165 ntBASIC0.79□□□□□ -2.28
VCX3AQ9NNX9 RNU6-282P-201ENST00000365357 103 ntBASIC0.79□□□□□ -2.28
VCX3AQ9NNX9 Y_RNA.560-201ENST00000384689 102 ntBASIC0.79□□□□□ -2.28
VCX3AQ9NNX9 RNU6-1031P-201ENST00000384773 107 ntBASIC0.79□□□□□ -2.28
VCX3AQ9NNX9 RNU6-910P-201ENST00000390844 107 ntBASIC0.79□□□□□ -2.28
VCX3AQ9NNX9 AC114482.1-201ENST00000418010 247 ntBASIC0.79□□□□□ -2.28
VCX3AQ9NNX9 POLR2J4-204ENST00000418424 324 ntBASIC0.79□□□□□ -2.28
VCX3AQ9NNX9 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC0.79□□□□□ -2.28
VCX3AQ9NNX9 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC0.79□□□□□ -2.28
VCX3AQ9NNX9 SNORD124-201ENST00000459577 104 ntBASIC0.79□□□□□ -2.28
VCX3AQ9NNX9 AC079140.5-201ENST00000507882 310 ntBASIC0.79□□□□□ -2.28
VCX3AQ9NNX9 SNORA31.2-201ENST00000516019 134 ntBASIC0.79□□□□□ -2.28
VCX3AQ9NNX9 AC069113.1-201ENST00000517763 267 ntBASIC0.79□□□□□ -2.28
VCX3AQ9NNX9 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC0.79□□□□□ -2.28
VCX3AQ9NNX9 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC0.79□□□□□ -2.28
VCX3AQ9NNX9 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC0.79□□□□□ -2.28
VCX3AQ9NNX9 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC0.79□□□□□ -2.28
VCX3AQ9NNX9 AC090616.2-202ENST00000584248 222 ntBASIC0.79□□□□□ -2.28
VCX3AQ9NNX9 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC0.78□□□□□ -2.28
VCX3AQ9NNX9 AC008163.1-202ENST00000636004 2889 ntBASIC0.78□□□□□ -2.28
VCX3AQ9NNX9 Y_RNA.399-201ENST00000383955 105 ntBASIC0.78□□□□□ -2.28
VCX3AQ9NNX9 SNORA40.3-201ENST00000390964 122 ntBASIC0.78□□□□□ -2.28
VCX3AQ9NNX9 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC0.78□□□□□ -2.28
VCX3AQ9NNX9 HMGN1P14-201ENST00000412459 517 ntBASIC0.78□□□□□ -2.28
VCX3AQ9NNX9 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC0.78□□□□□ -2.28
VCX3AQ9NNX9 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC0.78□□□□□ -2.28
VCX3AQ9NNX9 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC0.78□□□□□ -2.28
VCX3AQ9NNX9 NFU1P2-201ENST00000448700 469 ntBASIC0.78□□□□□ -2.28
VCX3AQ9NNX9 AC009474.2-201ENST00000451383 136 ntBASIC0.78□□□□□ -2.28
VCX3AQ9NNX9 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC0.78□□□□□ -2.28
VCX3AQ9NNX9 RN7SKP210-201ENST00000459176 261 ntBASIC0.78□□□□□ -2.28
VCX3AQ9NNX9 AC048334.1-201ENST00000477975 159 ntBASIC0.78□□□□□ -2.28
VCX3AQ9NNX9 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC0.78□□□□□ -2.28
VCX3AQ9NNX9 RNU6-1146P-201ENST00000516282 102 ntBASIC0.78□□□□□ -2.28
VCX3AQ9NNX9 AC106038.2-201ENST00000520706 568 ntBASIC0.78□□□□□ -2.28
VCX3AQ9NNX9 AC109446.2-201ENST00000567872 497 ntBASIC0.78□□□□□ -2.28
VCX3AQ9NNX9 AC211469.2-201ENST00000605461 205 ntBASIC0.78□□□□□ -2.28
VCX3AQ9NNX9 AC027449.1-201ENST00000608890 407 ntBASIC0.78□□□□□ -2.28
VCX3AQ9NNX9 AL512598.1-201ENST00000610158 273 ntBASIC0.78□□□□□ -2.28
VCX3AQ9NNX9 TCL6_2.1-201ENST00000615162 119 ntBASIC0.78□□□□□ -2.28
VCX3AQ9NNX9 AC022960.3-201ENST00000619794 441 ntBASIC0.78□□□□□ -2.28
VCX3AQ9NNX9 AL353770.2-201ENST00000620024 78 ntBASIC0.78□□□□□ -2.28
VCX3AQ9NNX9 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC0.77□□□□□ -2.29
VCX3AQ9NNX9 RNU4-79P-201ENST00000362764 141 ntBASIC0.77□□□□□ -2.29
VCX3AQ9NNX9 SNORD73A-201ENST00000386062 65 ntBASIC0.77□□□□□ -2.29
VCX3AQ9NNX9 RNA5SP323-201ENST00000391094 133 ntBASIC0.77□□□□□ -2.29
VCX3AQ9NNX9 AC006461.1-201ENST00000412637 326 ntBASIC0.77□□□□□ -2.29
VCX3AQ9NNX9 AC016909.1-201ENST00000415916 166 ntBASIC0.77□□□□□ -2.29
VCX3AQ9NNX9 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC0.77□□□□□ -2.29
VCX3AQ9NNX9 AL606490.4-201ENST00000423117 127 ntBASIC0.77□□□□□ -2.29
VCX3AQ9NNX9 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC0.77□□□□□ -2.29
VCX3AQ9NNX9 MTCO2P3-201ENST00000442543 421 ntBASIC0.77□□□□□ -2.29
VCX3AQ9NNX9 MTCO3P8-201ENST00000453691 755 ntBASIC0.77□□□□□ -2.29
VCX3AQ9NNX9 RNU7-167P-201ENST00000459160 62 ntBASIC0.77□□□□□ -2.29
VCX3AQ9NNX9 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC0.77□□□□□ -2.29
VCX3AQ9NNX9 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC0.77□□□□□ -2.29
VCX3AQ9NNX9 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC0.77□□□□□ -2.29
VCX3AQ9NNX9 RNU6-351P-201ENST00000516097 100 ntBASIC0.77□□□□□ -2.29
VCX3AQ9NNX9 RNA5SP168-201ENST00000516642 112 ntBASIC0.77□□□□□ -2.29
VCX3AQ9NNX9 AC024995.1-201ENST00000523014 93 ntBASIC0.77□□□□□ -2.29
VCX3AQ9NNX9 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC0.77□□□□□ -2.29
VCX3AQ9NNX9 AC027807.1-201ENST00000559921 996 ntBASIC0.77□□□□□ -2.29
VCX3AQ9NNX9 AC009094.1-201ENST00000564443 426 ntBASIC0.77□□□□□ -2.29
VCX3AQ9NNX9 MIR5583-1-201ENST00000580941 59 ntBASIC0.77□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 120 ms