Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 RPS29P13-201ENST00000402041 169 ntBASIC0.37□□□□□ -2.35
CCDC42Q96M95 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC0.37□□□□□ -2.35
CCDC42Q96M95 RPS24P1-201ENST00000438550 371 ntBASIC0.37□□□□□ -2.35
CCDC42Q96M95 AL606517.2-201ENST00000442855 241 ntBASIC0.37□□□□□ -2.35
CCDC42Q96M95 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC0.37□□□□□ -2.35
CCDC42Q96M95 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC0.37□□□□□ -2.35
CCDC42Q96M95 AC007834.2-201ENST00000536310 343 ntBASIC0.37□□□□□ -2.35
CCDC42Q96M95 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC0.37□□□□□ -2.35
CCDC42Q96M95 LINC00871-202ENST00000556071 554 ntTSL 3 BASIC0.37□□□□□ -2.35
CCDC42Q96M95 Z99289.3-201ENST00000605586 594 ntBASIC0.37□□□□□ -2.35
CCDC42Q96M95 AC012557.2-201ENST00000605919 418 ntBASIC0.37□□□□□ -2.35
CCDC42Q96M95 MIR6788-201ENST00000618842 66 ntBASIC0.37□□□□□ -2.35
CCDC42Q96M95 AL136221.1-201ENST00000621449 509 ntBASIC0.37□□□□□ -2.35
CCDC42Q96M95 AC106754.2-201ENST00000623006 233 ntBASIC0.37□□□□□ -2.35
CCDC42Q96M95 CASC19-280ENST00000642102 1351 ntBASIC0.36□□□□□ -2.35
CCDC42Q96M95 RNU4-1-201ENST00000363925 141 ntBASIC0.36□□□□□ -2.35
CCDC42Q96M95 RNU6-945P-201ENST00000383947 107 ntBASIC0.36□□□□□ -2.35
CCDC42Q96M95 MIR653-201ENST00000385279 96 ntBASIC0.36□□□□□ -2.35
CCDC42Q96M95 AL031577.2-201ENST00000404133 280 ntBASIC0.36□□□□□ -2.35
CCDC42Q96M95 MTCYBP36-201ENST00000404146 440 ntBASIC0.36□□□□□ -2.35
CCDC42Q96M95 MIR548J-201ENST00000408833 112 ntBASIC0.36□□□□□ -2.35
CCDC42Q96M95 RPEP5-201ENST00000441137 268 ntBASIC0.36□□□□□ -2.35
CCDC42Q96M95 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC0.36□□□□□ -2.35
CCDC42Q96M95 GAPDHP17-201ENST00000449858 1001 ntBASIC0.36□□□□□ -2.35
CCDC42Q96M95 RNU7-90P-201ENST00000459216 62 ntBASIC0.36□□□□□ -2.35
CCDC42Q96M95 ZNF519P3-201ENST00000557158 1032 ntBASIC0.36□□□□□ -2.35
CCDC42Q96M95 MIR4452-201ENST00000583004 71 ntBASIC0.36□□□□□ -2.35
CCDC42Q96M95 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC0.36□□□□□ -2.35
CCDC42Q96M95 AC080078.2-201ENST00000603766 501 ntBASIC0.36□□□□□ -2.35
CCDC42Q96M95 AL158042.1-201ENST00000605338 460 ntBASIC0.36□□□□□ -2.35
CCDC42Q96M95 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC0.36□□□□□ -2.35
CCDC42Q96M95 AC019226.2-201ENST00000625973 424 ntBASIC0.36□□□□□ -2.35
CCDC42Q96M95 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC0.36□□□□□ -2.35
CCDC42Q96M95 RNU4-76P-201ENST00000364509 141 ntBASIC0.35□□□□□ -2.35
CCDC42Q96M95 Y_RNA.287-201ENST00000364853 94 ntBASIC0.35□□□□□ -2.35
CCDC42Q96M95 RNU6-641P-201ENST00000384006 107 ntBASIC0.35□□□□□ -2.35
CCDC42Q96M95 RNU6-45P-201ENST00000384471 107 ntBASIC0.35□□□□□ -2.35
CCDC42Q96M95 RNU6-417P-201ENST00000384712 107 ntBASIC0.35□□□□□ -2.35
CCDC42Q96M95 RNA5SP323-201ENST00000391094 133 ntBASIC0.35□□□□□ -2.35
CCDC42Q96M95 AC007283.2-201ENST00000424739 197 ntBASIC0.35□□□□□ -2.35
CCDC42Q96M95 AL133217.1-201ENST00000450980 425 ntBASIC0.35□□□□□ -2.35
CCDC42Q96M95 AC008628.2-201ENST00000502605 298 ntBASIC0.35□□□□□ -2.35
CCDC42Q96M95 AC116347.2-201ENST00000514912 523 ntBASIC0.35□□□□□ -2.35
CCDC42Q96M95 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC0.35□□□□□ -2.35
CCDC42Q96M95 MIR5000-201ENST00000577717 103 ntBASIC0.35□□□□□ -2.35
CCDC42Q96M95 AP000484.1-201ENST00000620067 1252 ntBASIC0.35□□□□□ -2.35
CCDC42Q96M95 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.35□□□□□ -2.35
CCDC42Q96M95 SNORA50A-201ENST00000384225 134 ntBASIC0.34□□□□□ -2.36
CCDC42Q96M95 RNU6-975P-201ENST00000384296 105 ntBASIC0.34□□□□□ -2.36
CCDC42Q96M95 SNORD115.1-201ENST00000391109 76 ntBASIC0.34□□□□□ -2.36
CCDC42Q96M95 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC0.34□□□□□ -2.36
CCDC42Q96M95 ZNF736P4Y-201ENST00000454995 1243 ntBASIC0.34□□□□□ -2.36
CCDC42Q96M95 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC0.34□□□□□ -2.36
CCDC42Q96M95 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC0.34□□□□□ -2.36
CCDC42Q96M95 HMGB1P29-201ENST00000505659 499 ntBASIC0.34□□□□□ -2.36
CCDC42Q96M95 AC104136.1-201ENST00000512969 394 ntBASIC0.34□□□□□ -2.36
CCDC42Q96M95 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC0.34□□□□□ -2.36
CCDC42Q96M95 MIR151B-201ENST00000584249 96 ntBASIC0.34□□□□□ -2.36
CCDC42Q96M95 BNIP3P40-201ENST00000596017 556 ntBASIC0.34□□□□□ -2.36
CCDC42Q96M95 AC104458.1-201ENST00000608243 463 ntBASIC0.34□□□□□ -2.36
CCDC42Q96M95 MIR8070-201ENST00000616510 88 ntBASIC0.34□□□□□ -2.36
CCDC42Q96M95 MIR8054-201ENST00000620877 86 ntBASIC0.34□□□□□ -2.36
CCDC42Q96M95 AL603839.4-201ENST00000624658 1005 ntBASIC0.34□□□□□ -2.36
CCDC42Q96M95 AL359697.1-201ENST00000624879 587 ntBASIC0.34□□□□□ -2.36
CCDC42Q96M95 UGP2-231ENST00000627474 264 ntTSL 5 BASIC0.34□□□□□ -2.36
CCDC42Q96M95 AL442644.1-201ENST00000454390 3105 ntBASIC0.33□□□□□ -2.36
CCDC42Q96M95 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC0.33□□□□□ -2.36
CCDC42Q96M95 SNORA25.9-201ENST00000365087 128 ntBASIC0.33□□□□□ -2.36
CCDC42Q96M95 RNU6-809P-201ENST00000384461 107 ntBASIC0.33□□□□□ -2.36
CCDC42Q96M95 RNA5SP467-201ENST00000391274 118 ntBASIC0.33□□□□□ -2.36
CCDC42Q96M95 TIMM9P3-201ENST00000428659 274 ntBASIC0.33□□□□□ -2.36
CCDC42Q96M95 AC092423.1-201ENST00000430165 186 ntBASIC0.33□□□□□ -2.36
CCDC42Q96M95 AC119618.1-201ENST00000434191 222 ntBASIC0.33□□□□□ -2.36
CCDC42Q96M95 AL606662.1-201ENST00000445763 553 ntBASIC0.33□□□□□ -2.36
CCDC42Q96M95 AC010587.1-201ENST00000505809 469 ntBASIC0.33□□□□□ -2.36
CCDC42Q96M95 RNU6-947P-201ENST00000516264 106 ntBASIC0.33□□□□□ -2.36
CCDC42Q96M95 DEFB131C-201ENST00000528817 165 ntBASIC0.33□□□□□ -2.36
CCDC42Q96M95 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC0.33□□□□□ -2.36
CCDC42Q96M95 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC0.33□□□□□ -2.36
CCDC42Q96M95 AC022217.4-201ENST00000604389 163 ntBASIC0.33□□□□□ -2.36
CCDC42Q96M95 AC008250.2-201ENST00000615261 205 ntBASIC0.33□□□□□ -2.36
CCDC42Q96M95 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC0.33□□□□□ -2.36
CCDC42Q96M95 AC134026.1-201ENST00000623249 2239 ntBASIC0.33□□□□□ -2.36
CCDC42Q96M95 MTND4P5-201ENST00000435821 1374 ntBASIC0.32□□□□□ -2.36
CCDC42Q96M95 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC0.32□□□□□ -2.36
CCDC42Q96M95 Y_RNA.504-201ENST00000384481 104 ntBASIC0.32□□□□□ -2.36
CCDC42Q96M95 MIR660-201ENST00000385235 97 ntBASIC0.32□□□□□ -2.36
CCDC42Q96M95 AC012306.1-201ENST00000423267 114 ntBASIC0.32□□□□□ -2.36
CCDC42Q96M95 RPL37P21-201ENST00000435890 276 ntBASIC0.32□□□□□ -2.36
CCDC42Q96M95 AC016717.1-201ENST00000448918 286 ntBASIC0.32□□□□□ -2.36
CCDC42Q96M95 AC016550.1-201ENST00000505348 785 ntBASIC0.32□□□□□ -2.36
CCDC42Q96M95 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC0.32□□□□□ -2.36
CCDC42Q96M95 LRRC34P2-201ENST00000514850 553 ntBASIC0.32□□□□□ -2.36
CCDC42Q96M95 AC090049.2-201ENST00000550377 109 ntBASIC0.32□□□□□ -2.36
CCDC42Q96M95 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC0.32□□□□□ -2.36
CCDC42Q96M95 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC0.32□□□□□ -2.36
CCDC42Q96M95 AL391840.1-201ENST00000571144 367 ntBASIC0.32□□□□□ -2.36
CCDC42Q96M95 Z83818.1-201ENST00000603584 150 ntBASIC0.32□□□□□ -2.36
CCDC42Q96M95 AL357312.1-201ENST00000603879 298 ntBASIC0.32□□□□□ -2.36
CCDC42Q96M95 AL031775.1-201ENST00000607014 887 ntBASIC0.32□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 88.4 ms