Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC3.38□□□□□ -1.87
SMC1BQ8NDV3 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
SMC1BQ8NDV3 AL117187.1-201ENST00000555482 181 ntBASIC3.38□□□□□ -1.87
SMC1BQ8NDV3 MIR4765-201ENST00000585007 77 ntBASIC3.38□□□□□ -1.87
SMC1BQ8NDV3 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC3.38□□□□□ -1.87
SMC1BQ8NDV3 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC3.37□□□□□ -1.87
SMC1BQ8NDV3 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
SMC1BQ8NDV3 RNU6-529P-201ENST00000363383 104 ntBASIC3.37□□□□□ -1.87
SMC1BQ8NDV3 SNORA51.4-201ENST00000364993 124 ntBASIC3.37□□□□□ -1.87
SMC1BQ8NDV3 Y_RNA.319-201ENST00000365138 92 ntBASIC3.37□□□□□ -1.87
SMC1BQ8NDV3 SNORA63.7-201ENST00000365579 123 ntBASIC3.37□□□□□ -1.87
SMC1BQ8NDV3 MIR186-201ENST00000384988 86 ntBASIC3.37□□□□□ -1.87
SMC1BQ8NDV3 MIR1252-201ENST00000408861 65 ntBASIC3.37□□□□□ -1.87
SMC1BQ8NDV3 RNU4-53P-201ENST00000410828 140 ntBASIC3.37□□□□□ -1.87
SMC1BQ8NDV3 Z98742.2-201ENST00000431564 187 ntBASIC3.37□□□□□ -1.87
SMC1BQ8NDV3 HMGN2P3-201ENST00000433603 273 ntBASIC3.37□□□□□ -1.87
SMC1BQ8NDV3 AC244505.4-201ENST00000434905 287 ntBASIC3.37□□□□□ -1.87
SMC1BQ8NDV3 HMGN2P5-201ENST00000436882 273 ntBASIC3.37□□□□□ -1.87
SMC1BQ8NDV3 SSXP5-201ENST00000443473 287 ntBASIC3.37□□□□□ -1.87
SMC1BQ8NDV3 RPL23AP70-201ENST00000483361 460 ntBASIC3.37□□□□□ -1.87
SMC1BQ8NDV3 HMGB1P35-201ENST00000503360 598 ntBASIC3.37□□□□□ -1.87
SMC1BQ8NDV3 SNORA31.16-201ENST00000516773 139 ntBASIC3.37□□□□□ -1.87
SMC1BQ8NDV3 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC3.37□□□□□ -1.87
SMC1BQ8NDV3 AC027176.1-201ENST00000560204 514 ntBASIC3.37□□□□□ -1.87
SMC1BQ8NDV3 AL390123.1-201ENST00000603216 237 ntBASIC3.37□□□□□ -1.87
SMC1BQ8NDV3 AL355297.3-201ENST00000604082 446 ntBASIC3.37□□□□□ -1.87
SMC1BQ8NDV3 AC007318.2-201ENST00000620999 243 ntBASIC3.37□□□□□ -1.87
SMC1BQ8NDV3 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC3.37□□□□□ -1.87
SMC1BQ8NDV3 AC099654.7-201ENST00000635788 2127 ntBASIC3.37□□□□□ -1.87
SMC1BQ8NDV3 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
SMC1BQ8NDV3 RNU6-655P-201ENST00000362858 107 ntBASIC3.36□□□□□ -1.87
SMC1BQ8NDV3 RNU6-137P-201ENST00000363680 108 ntBASIC3.36□□□□□ -1.87
SMC1BQ8NDV3 RNU6-1210P-201ENST00000363775 107 ntBASIC3.36□□□□□ -1.87
SMC1BQ8NDV3 Y_RNA.557-201ENST00000384680 107 ntBASIC3.36□□□□□ -1.87
SMC1BQ8NDV3 MIR512-1-201ENST00000384913 84 ntBASIC3.36□□□□□ -1.87
SMC1BQ8NDV3 RPL21P3-201ENST00000395517 478 ntBASIC3.36□□□□□ -1.87
SMC1BQ8NDV3 AC097463.2-201ENST00000421074 142 ntBASIC3.36□□□□□ -1.87
SMC1BQ8NDV3 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC3.36□□□□□ -1.87
SMC1BQ8NDV3 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC3.36□□□□□ -1.87
SMC1BQ8NDV3 snoU13.6-201ENST00000458785 104 ntBASIC3.36□□□□□ -1.87
SMC1BQ8NDV3 AC146507.2-201ENST00000460608 476 ntBASIC3.36□□□□□ -1.87
SMC1BQ8NDV3 RNA5SP112-201ENST00000515937 99 ntBASIC3.36□□□□□ -1.87
SMC1BQ8NDV3 RNU5F-2P-201ENST00000516066 82 ntBASIC3.36□□□□□ -1.87
SMC1BQ8NDV3 Y_RNA.715-201ENST00000517082 110 ntBASIC3.36□□□□□ -1.87
SMC1BQ8NDV3 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC3.36□□□□□ -1.87
SMC1BQ8NDV3 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
SMC1BQ8NDV3 CYP4A27P-201ENST00000567218 190 ntBASIC3.36□□□□□ -1.87
SMC1BQ8NDV3 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC3.36□□□□□ -1.87
SMC1BQ8NDV3 MIR3923-201ENST00000579521 83 ntBASIC3.36□□□□□ -1.87
SMC1BQ8NDV3 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC3.36□□□□□ -1.87
SMC1BQ8NDV3 AL034555.1-201ENST00000604816 211 ntBASIC3.36□□□□□ -1.87
SMC1BQ8NDV3 AC002064.3-201ENST00000623448 346 ntBASIC3.36□□□□□ -1.87
SMC1BQ8NDV3 Clostridiales-1.2-201ENST00000636724 160 ntBASIC3.36□□□□□ -1.87
SMC1BQ8NDV3 Z75746.1-201ENST00000440243 2080 ntBASIC3.35□□□□□ -1.87
SMC1BQ8NDV3 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
SMC1BQ8NDV3 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
SMC1BQ8NDV3 Y_RNA.133-201ENST00000363428 110 ntBASIC3.35□□□□□ -1.87
SMC1BQ8NDV3 RPL21P75-201ENST00000396599 483 ntBASIC3.35□□□□□ -1.87
SMC1BQ8NDV3 RPL21P28-201ENST00000401418 483 ntBASIC3.35□□□□□ -1.87
SMC1BQ8NDV3 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.35□□□□□ -1.87
SMC1BQ8NDV3 RPS26P42-201ENST00000413485 326 ntBASIC3.35□□□□□ -1.87
SMC1BQ8NDV3 RPL32P35-201ENST00000415214 394 ntBASIC3.35□□□□□ -1.87
SMC1BQ8NDV3 AC009963.1-201ENST00000417265 157 ntBASIC3.35□□□□□ -1.87
SMC1BQ8NDV3 AL590556.1-201ENST00000423231 483 ntBASIC3.35□□□□□ -1.87
SMC1BQ8NDV3 RPS29P12-201ENST00000460178 152 ntBASIC3.35□□□□□ -1.87
SMC1BQ8NDV3 RPL21P39-201ENST00000463605 483 ntBASIC3.35□□□□□ -1.87
SMC1BQ8NDV3 RPL31P41-201ENST00000477967 372 ntBASIC3.35□□□□□ -1.87
SMC1BQ8NDV3 AC087190.1-201ENST00000484462 480 ntBASIC3.35□□□□□ -1.87
SMC1BQ8NDV3 AC107032.1-201ENST00000485945 480 ntBASIC3.35□□□□□ -1.87
SMC1BQ8NDV3 AC093591.1-201ENST00000491435 481 ntBASIC3.35□□□□□ -1.87
SMC1BQ8NDV3 RPL21P16-201ENST00000495531 483 ntBASIC3.35□□□□□ -1.87
SMC1BQ8NDV3 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC3.35□□□□□ -1.87
SMC1BQ8NDV3 SNORA31.6-201ENST00000516241 130 ntBASIC3.35□□□□□ -1.87
SMC1BQ8NDV3 SCARNA11.3-201ENST00000517276 130 ntBASIC3.35□□□□□ -1.87
SMC1BQ8NDV3 AC109329.2-201ENST00000519658 482 ntBASIC3.35□□□□□ -1.87
SMC1BQ8NDV3 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC3.35□□□□□ -1.87
SMC1BQ8NDV3 AL442163.3-201ENST00000554110 156 ntBASIC3.35□□□□□ -1.87
SMC1BQ8NDV3 AC008269.2-201ENST00000561915 1105 ntBASIC3.35□□□□□ -1.87
SMC1BQ8NDV3 AL078605.1-201ENST00000603529 500 ntBASIC3.35□□□□□ -1.87
SMC1BQ8NDV3 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.35□□□□□ -1.87
SMC1BQ8NDV3 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
SMC1BQ8NDV3 RNU6-222P-201ENST00000362438 107 ntBASIC3.34□□□□□ -1.87
SMC1BQ8NDV3 Y_RNA.27-201ENST00000362540 103 ntBASIC3.34□□□□□ -1.87
SMC1BQ8NDV3 Y_RNA.40-201ENST00000362645 93 ntBASIC3.34□□□□□ -1.87
SMC1BQ8NDV3 Y_RNA.144-201ENST00000363521 113 ntBASIC3.34□□□□□ -1.87
SMC1BQ8NDV3 Y_RNA.149-201ENST00000363558 117 ntBASIC3.34□□□□□ -1.87
SMC1BQ8NDV3 Y_RNA.153-201ENST00000363615 91 ntBASIC3.34□□□□□ -1.87
SMC1BQ8NDV3 U8.10-201ENST00000384260 133 ntBASIC3.34□□□□□ -1.87
SMC1BQ8NDV3 Y_RNA.551-201ENST00000384661 102 ntBASIC3.34□□□□□ -1.87
SMC1BQ8NDV3 MIR548F4-201ENST00000408515 105 ntBASIC3.34□□□□□ -1.87
SMC1BQ8NDV3 RN7SKP223-201ENST00000410582 62 ntBASIC3.34□□□□□ -1.87
SMC1BQ8NDV3 HMGB3P2-201ENST00000411913 584 ntBASIC3.34□□□□□ -1.87
SMC1BQ8NDV3 U8.20-201ENST00000459445 131 ntBASIC3.34□□□□□ -1.87
SMC1BQ8NDV3 MTATP8P1-201ENST00000467115 207 ntBASIC3.34□□□□□ -1.87
SMC1BQ8NDV3 AP000870.1-201ENST00000472927 406 ntBASIC3.34□□□□□ -1.87
SMC1BQ8NDV3 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC3.34□□□□□ -1.87
SMC1BQ8NDV3 RNU6-1114P-201ENST00000516022 107 ntBASIC3.34□□□□□ -1.87
SMC1BQ8NDV3 RNA5SP54-201ENST00000516951 92 ntBASIC3.34□□□□□ -1.87
SMC1BQ8NDV3 AC022868.1-201ENST00000517767 391 ntBASIC3.34□□□□□ -1.87
SMC1BQ8NDV3 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC3.34□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 162.7 ms