Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 SNRPGP19-201ENST00000603826 189 ntBASIC1.72□□□□□ -2.13
ZNF540Q8NDQ6 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC1.72□□□□□ -2.13
ZNF540Q8NDQ6 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC1.72□□□□□ -2.13
ZNF540Q8NDQ6 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.72□□□□□ -2.13
ZNF540Q8NDQ6 ATP8A2P2-201ENST00000437678 1568 ntBASIC1.72□□□□□ -2.13
ZNF540Q8NDQ6 CASC19-280ENST00000642102 1351 ntBASIC1.72□□□□□ -2.13
ZNF540Q8NDQ6 Y_RNA.86-201ENST00000363020 111 ntBASIC1.71□□□□□ -2.14
ZNF540Q8NDQ6 RNU6-82P-201ENST00000363970 107 ntBASIC1.71□□□□□ -2.14
ZNF540Q8NDQ6 SNORD32B-201ENST00000364460 84 ntBASIC1.71□□□□□ -2.14
ZNF540Q8NDQ6 Y_RNA.573-201ENST00000384763 105 ntBASIC1.71□□□□□ -2.14
ZNF540Q8NDQ6 RNA5SP219-201ENST00000390940 113 ntBASIC1.71□□□□□ -2.14
ZNF540Q8NDQ6 AL023284.1-201ENST00000403956 276 ntBASIC1.71□□□□□ -2.14
ZNF540Q8NDQ6 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC1.71□□□□□ -2.14
ZNF540Q8NDQ6 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC1.71□□□□□ -2.14
ZNF540Q8NDQ6 AL121601.2-201ENST00000438019 707 ntBASIC1.71□□□□□ -2.14
ZNF540Q8NDQ6 AC007677.1-201ENST00000445757 515 ntBASIC1.71□□□□□ -2.14
ZNF540Q8NDQ6 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC1.71□□□□□ -2.14
ZNF540Q8NDQ6 AC091885.1-201ENST00000506658 268 ntBASIC1.71□□□□□ -2.14
ZNF540Q8NDQ6 LRRC34P2-201ENST00000514850 553 ntBASIC1.71□□□□□ -2.14
ZNF540Q8NDQ6 RNVU1-2-201ENST00000516326 135 ntBASIC1.71□□□□□ -2.14
ZNF540Q8NDQ6 RNU6-1069P-201ENST00000516612 133 ntBASIC1.71□□□□□ -2.14
ZNF540Q8NDQ6 RNU6-1314P-201ENST00000517139 104 ntBASIC1.71□□□□□ -2.14
ZNF540Q8NDQ6 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC1.71□□□□□ -2.14
ZNF540Q8NDQ6 SCOCP1-201ENST00000554676 349 ntBASIC1.71□□□□□ -2.14
ZNF540Q8NDQ6 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.71□□□□□ -2.14
ZNF540Q8NDQ6 MIR4422-201ENST00000581938 83 ntBASIC1.71□□□□□ -2.14
ZNF540Q8NDQ6 AC018638.8-201ENST00000588755 281 ntBASIC1.71□□□□□ -2.14
ZNF540Q8NDQ6 BNIP3P16-201ENST00000589779 534 ntBASIC1.71□□□□□ -2.14
ZNF540Q8NDQ6 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.71□□□□□ -2.14
ZNF540Q8NDQ6 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC1.71□□□□□ -2.14
ZNF540Q8NDQ6 LINC02555-201ENST00000563933 1951 ntBASIC1.7□□□□□ -2.14
ZNF540Q8NDQ6 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.7□□□□□ -2.14
ZNF540Q8NDQ6 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC1.7□□□□□ -2.14
ZNF540Q8NDQ6 Y_RNA.157-201ENST00000363638 102 ntBASIC1.7□□□□□ -2.14
ZNF540Q8NDQ6 RNU6-266P-201ENST00000364225 107 ntBASIC1.7□□□□□ -2.14
ZNF540Q8NDQ6 RNU6-1141P-201ENST00000364520 107 ntBASIC1.7□□□□□ -2.14
ZNF540Q8NDQ6 RNU6-26P-201ENST00000383985 107 ntBASIC1.7□□□□□ -2.14
ZNF540Q8NDQ6 RNU6-434P-201ENST00000384376 107 ntBASIC1.7□□□□□ -2.14
ZNF540Q8NDQ6 RNU6-831P-201ENST00000384548 107 ntBASIC1.7□□□□□ -2.14
ZNF540Q8NDQ6 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.7□□□□□ -2.14
ZNF540Q8NDQ6 U8.13-201ENST00000390842 128 ntBASIC1.7□□□□□ -2.14
ZNF540Q8NDQ6 SNORD37.1-201ENST00000390968 65 ntBASIC1.7□□□□□ -2.14
ZNF540Q8NDQ6 RNA5SP118-201ENST00000410385 109 ntBASIC1.7□□□□□ -2.14
ZNF540Q8NDQ6 PDCL2P1-201ENST00000419302 352 ntBASIC1.7□□□□□ -2.14
ZNF540Q8NDQ6 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC1.7□□□□□ -2.14
ZNF540Q8NDQ6 AC145146.1-201ENST00000496370 254 ntBASIC1.7□□□□□ -2.14
ZNF540Q8NDQ6 AC018710.1-201ENST00000506509 158 ntBASIC1.7□□□□□ -2.14
ZNF540Q8NDQ6 PRDX4P1-201ENST00000507189 574 ntBASIC1.7□□□□□ -2.14
ZNF540Q8NDQ6 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC1.7□□□□□ -2.14
ZNF540Q8NDQ6 SNORA14.1-201ENST00000516113 141 ntBASIC1.7□□□□□ -2.14
ZNF540Q8NDQ6 RNU6-189P-201ENST00000516120 101 ntBASIC1.7□□□□□ -2.14
ZNF540Q8NDQ6 MIR3942-201ENST00000585264 109 ntBASIC1.7□□□□□ -2.14
ZNF540Q8NDQ6 MIR5692C1-201ENST00000585309 91 ntBASIC1.7□□□□□ -2.14
ZNF540Q8NDQ6 AC092747.3-201ENST00000603769 301 ntBASIC1.7□□□□□ -2.14
ZNF540Q8NDQ6 AL356157.2-201ENST00000605122 111 ntBASIC1.7□□□□□ -2.14
ZNF540Q8NDQ6 BNIP3P10-201ENST00000605360 577 ntBASIC1.7□□□□□ -2.14
ZNF540Q8NDQ6 AC009318.2-201ENST00000610917 651 ntBASIC1.7□□□□□ -2.14
ZNF540Q8NDQ6 SNORD98-201ENST00000636377 67 ntBASIC1.7□□□□□ -2.14
ZNF540Q8NDQ6 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.69□□□□□ -2.14
ZNF540Q8NDQ6 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.69□□□□□ -2.14
ZNF540Q8NDQ6 Y_RNA.324-201ENST00000365165 102 ntBASIC1.69□□□□□ -2.14
ZNF540Q8NDQ6 Y_RNA.332-201ENST00000365271 113 ntBASIC1.69□□□□□ -2.14
ZNF540Q8NDQ6 RPS20P15-201ENST00000412792 311 ntBASIC1.69□□□□□ -2.14
ZNF540Q8NDQ6 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC1.69□□□□□ -2.14
ZNF540Q8NDQ6 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC1.69□□□□□ -2.14
ZNF540Q8NDQ6 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC1.69□□□□□ -2.14
ZNF540Q8NDQ6 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC1.69□□□□□ -2.14
ZNF540Q8NDQ6 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC1.69□□□□□ -2.14
ZNF540Q8NDQ6 AP005597.4-201ENST00000526762 229 ntBASIC1.69□□□□□ -2.14
ZNF540Q8NDQ6 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC1.69□□□□□ -2.14
ZNF540Q8NDQ6 MIR4419B-201ENST00000577260 68 ntBASIC1.69□□□□□ -2.14
ZNF540Q8NDQ6 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.69□□□□□ -2.14
ZNF540Q8NDQ6 AC011494.1-201ENST00000596454 237 ntBASIC1.69□□□□□ -2.14
ZNF540Q8NDQ6 VN1R107P-201ENST00000601784 209 ntBASIC1.69□□□□□ -2.14
ZNF540Q8NDQ6 AL121757.2-201ENST00000611223 313 ntBASIC1.69□□□□□ -2.14
ZNF540Q8NDQ6 AL355073.2-201ENST00000612106 557 ntBASIC1.69□□□□□ -2.14
ZNF540Q8NDQ6 AL590240.4-201ENST00000616908 390 ntBASIC1.69□□□□□ -2.14
ZNF540Q8NDQ6 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC1.69□□□□□ -2.14
ZNF540Q8NDQ6 AC097372.5-201ENST00000623665 376 ntBASIC1.69□□□□□ -2.14
ZNF540Q8NDQ6 AC100810.6-201ENST00000638068 285 ntBASIC1.69□□□□□ -2.14
ZNF540Q8NDQ6 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.69□□□□□ -2.14
ZNF540Q8NDQ6 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC1.68□□□□□ -2.14
ZNF540Q8NDQ6 Y_RNA.67-201ENST00000362870 100 ntBASIC1.68□□□□□ -2.14
ZNF540Q8NDQ6 RNU6-254P-201ENST00000363377 107 ntBASIC1.68□□□□□ -2.14
ZNF540Q8NDQ6 Y_RNA.135-201ENST00000363439 95 ntBASIC1.68□□□□□ -2.14
ZNF540Q8NDQ6 Y_RNA.160-201ENST00000363677 92 ntBASIC1.68□□□□□ -2.14
ZNF540Q8NDQ6 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.68□□□□□ -2.14
ZNF540Q8NDQ6 RNU6-373P-201ENST00000411247 98 ntBASIC1.68□□□□□ -2.14
ZNF540Q8NDQ6 MTCO3P46-201ENST00000425787 232 ntBASIC1.68□□□□□ -2.14
ZNF540Q8NDQ6 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC1.68□□□□□ -2.14
ZNF540Q8NDQ6 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC1.68□□□□□ -2.14
ZNF540Q8NDQ6 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.68□□□□□ -2.14
ZNF540Q8NDQ6 AL357134.1-201ENST00000445848 426 ntBASIC1.68□□□□□ -2.14
ZNF540Q8NDQ6 HMGN2P18-201ENST00000450680 270 ntBASIC1.68□□□□□ -2.14
ZNF540Q8NDQ6 snoU13.9-201ENST00000458927 103 ntBASIC1.68□□□□□ -2.14
ZNF540Q8NDQ6 HMGN1P12-201ENST00000499125 195 ntBASIC1.68□□□□□ -2.14
ZNF540Q8NDQ6 COPS8P3-201ENST00000526024 482 ntBASIC1.68□□□□□ -2.14
ZNF540Q8NDQ6 SUB1P4-201ENST00000566062 339 ntBASIC1.68□□□□□ -2.14
ZNF540Q8NDQ6 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC1.68□□□□□ -2.14
ZNF540Q8NDQ6 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 132.2 ms