Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 SNRPGP3-201ENST00000469405 227 ntBASIC3.78□□□□□ -1.8
USHBP1Q8N6Y0 MRPL42P6-201ENST00000486397 371 ntBASIC3.78□□□□□ -1.8
USHBP1Q8N6Y0 Y_RNA.703-201ENST00000516846 111 ntBASIC3.78□□□□□ -1.8
USHBP1Q8N6Y0 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC3.78□□□□□ -1.8
USHBP1Q8N6Y0 AC009487.2-201ENST00000420969 6821 ntBASIC3.78□□□□□ -1.81
USHBP1Q8N6Y0 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
USHBP1Q8N6Y0 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
USHBP1Q8N6Y0 OFD1P6Y-202ENST00000451061 2724 ntBASIC3.77□□□□□ -1.81
USHBP1Q8N6Y0 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
USHBP1Q8N6Y0 RNU1-75P-201ENST00000347264 129 ntBASIC3.77□□□□□ -1.81
USHBP1Q8N6Y0 SNORA25.1-201ENST00000362326 128 ntBASIC3.77□□□□□ -1.81
USHBP1Q8N6Y0 RNU6-682P-201ENST00000363843 106 ntBASIC3.77□□□□□ -1.81
USHBP1Q8N6Y0 SNORD115-8-201ENST00000363856 82 ntBASIC3.77□□□□□ -1.81
USHBP1Q8N6Y0 SNORD115-38-201ENST00000365037 82 ntBASIC3.77□□□□□ -1.81
USHBP1Q8N6Y0 RNU6-187P-201ENST00000384139 106 ntBASIC3.77□□□□□ -1.81
USHBP1Q8N6Y0 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC3.77□□□□□ -1.81
USHBP1Q8N6Y0 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC3.77□□□□□ -1.81
USHBP1Q8N6Y0 Y_RNA.683-201ENST00000516508 93 ntBASIC3.77□□□□□ -1.81
USHBP1Q8N6Y0 SNORA64.4-201ENST00000516632 81 ntBASIC3.77□□□□□ -1.81
USHBP1Q8N6Y0 RNU6-861P-201ENST00000516745 106 ntBASIC3.77□□□□□ -1.81
USHBP1Q8N6Y0 RNU6-567P-201ENST00000516746 107 ntBASIC3.77□□□□□ -1.81
USHBP1Q8N6Y0 AL391261.3-201ENST00000557194 520 ntBASIC3.77□□□□□ -1.81
USHBP1Q8N6Y0 UBL5P4-201ENST00000562584 236 ntBASIC3.77□□□□□ -1.81
USHBP1Q8N6Y0 MIR4282-201ENST00000583613 67 ntBASIC3.77□□□□□ -1.81
USHBP1Q8N6Y0 AC008749.1-201ENST00000597650 306 ntBASIC3.77□□□□□ -1.81
USHBP1Q8N6Y0 AC072026.1-201ENST00000605023 201 ntBASIC3.77□□□□□ -1.81
USHBP1Q8N6Y0 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.77□□□□□ -1.81
USHBP1Q8N6Y0 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.77□□□□□ -1.81
USHBP1Q8N6Y0 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
USHBP1Q8N6Y0 AF127577.6-201ENST00000623352 2191 ntBASIC3.76□□□□□ -1.81
USHBP1Q8N6Y0 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC3.76□□□□□ -1.81
USHBP1Q8N6Y0 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.76□□□□□ -1.81
USHBP1Q8N6Y0 RNU6-1020P-201ENST00000363684 107 ntBASIC3.76□□□□□ -1.81
USHBP1Q8N6Y0 Y_RNA.275-201ENST00000364726 110 ntBASIC3.76□□□□□ -1.81
USHBP1Q8N6Y0 RNU6-514P-201ENST00000384208 107 ntBASIC3.76□□□□□ -1.81
USHBP1Q8N6Y0 Y_RNA.570-201ENST00000384750 101 ntBASIC3.76□□□□□ -1.81
USHBP1Q8N6Y0 Y_RNA.590-201ENST00000410140 107 ntBASIC3.76□□□□□ -1.81
USHBP1Q8N6Y0 RN7SKP61-201ENST00000410642 295 ntBASIC3.76□□□□□ -1.81
USHBP1Q8N6Y0 RNU2-61P-201ENST00000411069 191 ntBASIC3.76□□□□□ -1.81
USHBP1Q8N6Y0 RNU6-1001P-201ENST00000411265 100 ntBASIC3.76□□□□□ -1.81
USHBP1Q8N6Y0 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC3.76□□□□□ -1.81
USHBP1Q8N6Y0 RPL23AP36-201ENST00000413895 458 ntBASIC3.76□□□□□ -1.81
USHBP1Q8N6Y0 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC3.76□□□□□ -1.81
USHBP1Q8N6Y0 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC3.76□□□□□ -1.81
USHBP1Q8N6Y0 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC3.76□□□□□ -1.81
USHBP1Q8N6Y0 Y_RNA.679-201ENST00000516416 91 ntBASIC3.76□□□□□ -1.81
USHBP1Q8N6Y0 SNORA31.23-201ENST00000517219 133 ntBASIC3.76□□□□□ -1.81
USHBP1Q8N6Y0 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.76□□□□□ -1.81
USHBP1Q8N6Y0 MIR3945-201ENST00000581853 98 ntBASIC3.76□□□□□ -1.81
USHBP1Q8N6Y0 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
USHBP1Q8N6Y0 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.76□□□□□ -1.81
USHBP1Q8N6Y0 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.76□□□□□ -1.81
USHBP1Q8N6Y0 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
USHBP1Q8N6Y0 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
USHBP1Q8N6Y0 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.75□□□□□ -1.81
USHBP1Q8N6Y0 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.75□□□□□ -1.81
USHBP1Q8N6Y0 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
USHBP1Q8N6Y0 RNU6-961P-201ENST00000363893 105 ntBASIC3.75□□□□□ -1.81
USHBP1Q8N6Y0 RNU6-1175P-201ENST00000365200 107 ntBASIC3.75□□□□□ -1.81
USHBP1Q8N6Y0 Y_RNA.506-201ENST00000384494 102 ntBASIC3.75□□□□□ -1.81
USHBP1Q8N6Y0 RNU6-125P-201ENST00000384505 107 ntBASIC3.75□□□□□ -1.81
USHBP1Q8N6Y0 MIR196B-201ENST00000384852 84 ntBASIC3.75□□□□□ -1.81
USHBP1Q8N6Y0 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC3.75□□□□□ -1.81
USHBP1Q8N6Y0 AC012308.1-201ENST00000451232 178 ntBASIC3.75□□□□□ -1.81
USHBP1Q8N6Y0 SNORD116-28-201ENST00000516123 91 ntBASIC3.75□□□□□ -1.81
USHBP1Q8N6Y0 SNORA27.4-201ENST00000516650 95 ntBASIC3.75□□□□□ -1.81
USHBP1Q8N6Y0 RNA5SP54-201ENST00000516951 92 ntBASIC3.75□□□□□ -1.81
USHBP1Q8N6Y0 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC3.75□□□□□ -1.81
USHBP1Q8N6Y0 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.75□□□□□ -1.81
USHBP1Q8N6Y0 MIR3186-201ENST00000577404 85 ntBASIC3.75□□□□□ -1.81
USHBP1Q8N6Y0 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC3.75□□□□□ -1.81
USHBP1Q8N6Y0 MESTIT1_1.1-201ENST00000618871 140 ntBASIC3.75□□□□□ -1.81
USHBP1Q8N6Y0 AC006001.4-201ENST00000622243 395 ntBASIC3.75□□□□□ -1.81
USHBP1Q8N6Y0 AC090740.1-201ENST00000623193 2262 ntBASIC3.75□□□□□ -1.81
USHBP1Q8N6Y0 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.75□□□□□ -1.81
USHBP1Q8N6Y0 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
USHBP1Q8N6Y0 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
USHBP1Q8N6Y0 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.74□□□□□ -1.81
USHBP1Q8N6Y0 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
USHBP1Q8N6Y0 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.74□□□□□ -1.81
USHBP1Q8N6Y0 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
USHBP1Q8N6Y0 UBE2WP1-201ENST00000362030 340 ntBASIC3.74□□□□□ -1.81
USHBP1Q8N6Y0 MIR410-201ENST00000362222 80 ntBASIC3.74□□□□□ -1.81
USHBP1Q8N6Y0 Y_RNA.82-201ENST00000363000 102 ntBASIC3.74□□□□□ -1.81
USHBP1Q8N6Y0 Y_RNA.92-201ENST00000363043 102 ntBASIC3.74□□□□□ -1.81
USHBP1Q8N6Y0 Y_RNA.235-201ENST00000364412 102 ntBASIC3.74□□□□□ -1.81
USHBP1Q8N6Y0 Y_RNA.306-201ENST00000365015 102 ntBASIC3.74□□□□□ -1.81
USHBP1Q8N6Y0 Y_RNA.312-201ENST00000365089 102 ntBASIC3.74□□□□□ -1.81
USHBP1Q8N6Y0 Y_RNA.322-201ENST00000365151 102 ntBASIC3.74□□□□□ -1.81
USHBP1Q8N6Y0 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC3.74□□□□□ -1.81
USHBP1Q8N6Y0 MTCO2P33-201ENST00000402100 465 ntBASIC3.74□□□□□ -1.81
USHBP1Q8N6Y0 AL138827.1-201ENST00000402666 306 ntBASIC3.74□□□□□ -1.81
USHBP1Q8N6Y0 RNU6-1140P-201ENST00000410517 106 ntBASIC3.74□□□□□ -1.81
USHBP1Q8N6Y0 RN7SKP284-201ENST00000411002 343 ntBASIC3.74□□□□□ -1.81
USHBP1Q8N6Y0 RNU6-651P-201ENST00000411040 105 ntBASIC3.74□□□□□ -1.81
USHBP1Q8N6Y0 Y_RNA.650-201ENST00000459002 102 ntBASIC3.74□□□□□ -1.81
USHBP1Q8N6Y0 Y_RNA.638-201ENST00000459374 113 ntBASIC3.74□□□□□ -1.81
USHBP1Q8N6Y0 RN7SL633P-201ENST00000488974 297 ntBASIC3.74□□□□□ -1.81
USHBP1Q8N6Y0 RNU1-61P-201ENST00000516107 151 ntBASIC3.74□□□□□ -1.81
USHBP1Q8N6Y0 Y_RNA.777-201ENST00000516982 102 ntBASIC3.74□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 130.7 ms