Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC-0.19□□□□□ -2.44
USF3Q68DE3 AC093027.1-201ENST00000546698 429 ntBASIC-0.19□□□□□ -2.44
USF3Q68DE3 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC-0.19□□□□□ -2.44
USF3Q68DE3 AC021231.3-201ENST00000558497 370 ntBASIC-0.19□□□□□ -2.44
USF3Q68DE3 AC092325.1-201ENST00000566449 554 ntBASIC-0.19□□□□□ -2.44
USF3Q68DE3 MIR4293-201ENST00000584305 78 ntBASIC-0.19□□□□□ -2.44
USF3Q68DE3 AL162424.1-201ENST00000602325 221 ntBASIC-0.19□□□□□ -2.44
USF3Q68DE3 AL513423.1-201ENST00000621695 132 ntBASIC-0.19□□□□□ -2.44
USF3Q68DE3 AL603839.4-201ENST00000624658 1005 ntBASIC-0.19□□□□□ -2.44
USF3Q68DE3 RNU6-1025P-201ENST00000410629 104 ntBASIC-0.2□□□□□ -2.44
USF3Q68DE3 Y_RNA.623-201ENST00000411128 95 ntBASIC-0.2□□□□□ -2.44
USF3Q68DE3 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC-0.2□□□□□ -2.44
USF3Q68DE3 AL035398.1-201ENST00000430869 322 ntBASIC-0.2□□□□□ -2.44
USF3Q68DE3 SEPT7P5-201ENST00000434048 306 ntBASIC-0.2□□□□□ -2.44
USF3Q68DE3 SEPT7P4-201ENST00000437076 306 ntBASIC-0.2□□□□□ -2.44
USF3Q68DE3 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC-0.2□□□□□ -2.44
USF3Q68DE3 RNA5SP227-201ENST00000516184 113 ntBASIC-0.2□□□□□ -2.44
USF3Q68DE3 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC-0.2□□□□□ -2.44
USF3Q68DE3 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC-0.2□□□□□ -2.44
USF3Q68DE3 AC012507.3-201ENST00000603556 477 ntBASIC-0.2□□□□□ -2.44
USF3Q68DE3 AL138889.2-201ENST00000603883 242 ntBASIC-0.2□□□□□ -2.44
USF3Q68DE3 AC090517.2-201ENST00000614966 680 ntBASIC-0.2□□□□□ -2.44
USF3Q68DE3 MIR412-201ENST00000362142 91 ntBASIC-0.21□□□□□ -2.44
USF3Q68DE3 SNORD32B-201ENST00000364460 84 ntBASIC-0.21□□□□□ -2.44
USF3Q68DE3 Y_RNA.534-201ENST00000384599 112 ntBASIC-0.21□□□□□ -2.44
USF3Q68DE3 RNU6-932P-201ENST00000391108 106 ntBASIC-0.21□□□□□ -2.44
USF3Q68DE3 RPS20P2-201ENST00000402520 389 ntBASIC-0.21□□□□□ -2.44
USF3Q68DE3 SNORD71-201ENST00000411292 86 ntBASIC-0.21□□□□□ -2.44
USF3Q68DE3 AC068533.2-201ENST00000411872 306 ntBASIC-0.21□□□□□ -2.44
USF3Q68DE3 MTCYBP10-201ENST00000424905 650 ntBASIC-0.21□□□□□ -2.44
USF3Q68DE3 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC-0.21□□□□□ -2.44
USF3Q68DE3 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC-0.21□□□□□ -2.44
USF3Q68DE3 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC-0.21□□□□□ -2.44
USF3Q68DE3 XACT-201ENST00000468762 497 ntTSL 5 BASIC-0.21□□□□□ -2.44
USF3Q68DE3 RNU6-1261P-201ENST00000517194 104 ntBASIC-0.21□□□□□ -2.44
USF3Q68DE3 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC-0.21□□□□□ -2.44
USF3Q68DE3 AC023538.1-201ENST00000534576 736 ntBASIC-0.21□□□□□ -2.44
USF3Q68DE3 HIGD1AP17-201ENST00000554576 276 ntBASIC-0.21□□□□□ -2.44
USF3Q68DE3 MIR4789-201ENST00000577469 82 ntBASIC-0.21□□□□□ -2.44
USF3Q68DE3 AC106754.2-201ENST00000623006 233 ntBASIC-0.21□□□□□ -2.44
USF3Q68DE3 AC120349.2-201ENST00000625002 298 ntBASIC-0.21□□□□□ -2.44
USF3Q68DE3 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC-0.21□□□□□ -2.44
USF3Q68DE3 RNU4-15P-201ENST00000362613 141 ntBASIC-0.21□□□□□ -2.44
USF3Q68DE3 RNY4P16-201ENST00000364768 94 ntBASIC-0.21□□□□□ -2.44
USF3Q68DE3 RNA5SP128-201ENST00000365305 116 ntBASIC-0.21□□□□□ -2.44
USF3Q68DE3 RNU6-1031P-201ENST00000384773 107 ntBASIC-0.21□□□□□ -2.44
USF3Q68DE3 RNA5SP467-201ENST00000391274 118 ntBASIC-0.21□□□□□ -2.44
USF3Q68DE3 AL079342.2-201ENST00000403367 482 ntBASIC-0.21□□□□□ -2.44
USF3Q68DE3 RN7SKP142-201ENST00000411236 328 ntBASIC-0.21□□□□□ -2.44
USF3Q68DE3 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC-0.21□□□□□ -2.44
USF3Q68DE3 AC243964.1-201ENST00000441814 261 ntBASIC-0.21□□□□□ -2.44
USF3Q68DE3 AC093019.1-201ENST00000443135 252 ntBASIC-0.21□□□□□ -2.44
USF3Q68DE3 AC104629.1-201ENST00000494226 508 ntBASIC-0.21□□□□□ -2.44
USF3Q68DE3 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC-0.21□□□□□ -2.44
USF3Q68DE3 AC025465.4-201ENST00000513422 638 ntBASIC-0.21□□□□□ -2.44
USF3Q68DE3 RNU5F-4P-201ENST00000516581 114 ntBASIC-0.21□□□□□ -2.44
USF3Q68DE3 RNU2-46P-201ENST00000517038 113 ntBASIC-0.21□□□□□ -2.44
USF3Q68DE3 AC005774.1-201ENST00000565247 567 ntTSL 4 BASIC-0.21□□□□□ -2.44
USF3Q68DE3 TPRKBP2-201ENST00000565969 475 ntBASIC-0.21□□□□□ -2.44
USF3Q68DE3 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC-0.21□□□□□ -2.44
USF3Q68DE3 AC015727.1-201ENST00000572792 512 ntTSL 5 BASIC-0.21□□□□□ -2.44
USF3Q68DE3 AC104695.3-201ENST00000604052 296 ntBASIC-0.21□□□□□ -2.44
USF3Q68DE3 AC112187.2-201ENST00000604345 283 ntBASIC-0.21□□□□□ -2.44
USF3Q68DE3 AC069545.1-201ENST00000605671 358 ntBASIC-0.21□□□□□ -2.44
USF3Q68DE3 AP001033.2-201ENST00000609701 1003 ntBASIC-0.21□□□□□ -2.44
USF3Q68DE3 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC-0.21□□□□□ -2.44
USF3Q68DE3 AC104985.3-201ENST00000623479 597 ntBASIC-0.21□□□□□ -2.44
USF3Q68DE3 AL356094.1-201ENST00000624663 1212 ntBASIC-0.21□□□□□ -2.44
USF3Q68DE3 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.21□□□□□ -2.44
USF3Q68DE3 MIR660-201ENST00000385235 97 ntBASIC-0.22□□□□□ -2.44
USF3Q68DE3 RNU4-27P-201ENST00000410889 139 ntBASIC-0.22□□□□□ -2.44
USF3Q68DE3 BTF3L4P1-201ENST00000413813 468 ntBASIC-0.22□□□□□ -2.44
USF3Q68DE3 AL365338.1-201ENST00000422282 858 ntBASIC-0.22□□□□□ -2.44
USF3Q68DE3 AC012368.2-201ENST00000423539 560 ntTSL 3 BASIC-0.22□□□□□ -2.44
USF3Q68DE3 AC245047.3-201ENST00000429428 127 ntBASIC-0.22□□□□□ -2.44
USF3Q68DE3 MTND4LP14-201ENST00000429447 288 ntBASIC-0.22□□□□□ -2.44
USF3Q68DE3 AL606517.2-201ENST00000442855 241 ntBASIC-0.22□□□□□ -2.44
USF3Q68DE3 MTCO1P19-201ENST00000443487 500 ntBASIC-0.22□□□□□ -2.44
USF3Q68DE3 AC007547.1-201ENST00000462177 490 ntBASIC-0.22□□□□□ -2.44
USF3Q68DE3 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC-0.22□□□□□ -2.44
USF3Q68DE3 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC-0.22□□□□□ -2.44
USF3Q68DE3 MTND2P7-201ENST00000521337 640 ntBASIC-0.22□□□□□ -2.44
USF3Q68DE3 AC025678.1-201ENST00000567861 338 ntBASIC-0.22□□□□□ -2.44
USF3Q68DE3 SNORA59B-202ENST00000578183 701 ntBASIC-0.22□□□□□ -2.44
USF3Q68DE3 SNORA25.18-201ENST00000607153 114 ntBASIC-0.22□□□□□ -2.44
USF3Q68DE3 AP000484.1-201ENST00000620067 1252 ntBASIC-0.22□□□□□ -2.44
USF3Q68DE3 AL157770.1-201ENST00000623049 439 ntBASIC-0.22□□□□□ -2.44
USF3Q68DE3 TTK-211ENST00000627129 240 ntTSL 5 BASIC-0.22□□□□□ -2.44
USF3Q68DE3 RNU6-199P-201ENST00000362954 107 ntBASIC-0.22□□□□□ -2.45
USF3Q68DE3 Y_RNA.132-201ENST00000363421 102 ntBASIC-0.22□□□□□ -2.45
USF3Q68DE3 SNORD14C-201ENST00000365382 88 ntBASIC-0.22□□□□□ -2.45
USF3Q68DE3 MIR610-201ENST00000385139 96 ntBASIC-0.22□□□□□ -2.45
USF3Q68DE3 RPS26P42-201ENST00000413485 326 ntBASIC-0.22□□□□□ -2.45
USF3Q68DE3 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC-0.22□□□□□ -2.45
USF3Q68DE3 HMGN2P22-201ENST00000427588 175 ntBASIC-0.22□□□□□ -2.45
USF3Q68DE3 MTCO3P43-201ENST00000440974 771 ntBASIC-0.22□□□□□ -2.45
USF3Q68DE3 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC-0.22□□□□□ -2.45
USF3Q68DE3 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC-0.22□□□□□ -2.45
USF3Q68DE3 snoU109.2-201ENST00000459316 135 ntBASIC-0.22□□□□□ -2.45
USF3Q68DE3 RNU6-917P-201ENST00000516294 104 ntBASIC-0.22□□□□□ -2.45
Retrieved 100 of 98,524 protein–RNA pairs in 128.5 ms