Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 RNU4-73P-201ENST00000363164 141 ntBASIC2.12□□□□□ -2.07
PDLIM3Q53GG5 Y_RNA.263-201ENST00000364659 114 ntBASIC2.12□□□□□ -2.07
PDLIM3Q53GG5 RNU6-378P-201ENST00000384324 107 ntBASIC2.12□□□□□ -2.07
PDLIM3Q53GG5 RNU6-1093P-201ENST00000391194 107 ntBASIC2.12□□□□□ -2.07
PDLIM3Q53GG5 AL138827.1-201ENST00000402666 306 ntBASIC2.12□□□□□ -2.07
PDLIM3Q53GG5 RN7SKP223-201ENST00000410582 62 ntBASIC2.12□□□□□ -2.07
PDLIM3Q53GG5 EIF1AXP1-201ENST00000419267 435 ntBASIC2.12□□□□□ -2.07
PDLIM3Q53GG5 AC011816.1-201ENST00000441346 546 ntBASIC2.12□□□□□ -2.07
PDLIM3Q53GG5 CYP2C59P-201ENST00000457790 269 ntBASIC2.12□□□□□ -2.07
PDLIM3Q53GG5 AC005741.1-201ENST00000511094 432 ntBASIC2.12□□□□□ -2.07
PDLIM3Q53GG5 RNU6-277P-201ENST00000516272 106 ntBASIC2.12□□□□□ -2.07
PDLIM3Q53GG5 RNU7-193P-201ENST00000516723 65 ntBASIC2.12□□□□□ -2.07
PDLIM3Q53GG5 CBX3P8-201ENST00000532412 525 ntBASIC2.12□□□□□ -2.07
PDLIM3Q53GG5 CYCSP26-201ENST00000534107 320 ntBASIC2.12□□□□□ -2.07
PDLIM3Q53GG5 APOOP3-201ENST00000536787 586 ntBASIC2.12□□□□□ -2.07
PDLIM3Q53GG5 IMMP1LP2-201ENST00000552954 492 ntBASIC2.12□□□□□ -2.07
PDLIM3Q53GG5 AC021231.3-201ENST00000558497 370 ntBASIC2.12□□□□□ -2.07
PDLIM3Q53GG5 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.12□□□□□ -2.07
PDLIM3Q53GG5 AP000654.2-201ENST00000605633 586 ntBASIC2.12□□□□□ -2.07
PDLIM3Q53GG5 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC2.12□□□□□ -2.07
PDLIM3Q53GG5 AC025253.1-201ENST00000613623 543 ntBASIC2.12□□□□□ -2.07
PDLIM3Q53GG5 AC084781.2-201ENST00000615568 161 ntBASIC2.12□□□□□ -2.07
PDLIM3Q53GG5 AC008121.3-201ENST00000618726 433 ntBASIC2.12□□□□□ -2.07
PDLIM3Q53GG5 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.12□□□□□ -2.07
PDLIM3Q53GG5 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
PDLIM3Q53GG5 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
PDLIM3Q53GG5 AC069528.2-201ENST00000624849 1991 ntBASIC2.12□□□□□ -2.07
PDLIM3Q53GG5 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.11□□□□□ -2.07
PDLIM3Q53GG5 Y_RNA.259-201ENST00000364619 101 ntBASIC2.11□□□□□ -2.07
PDLIM3Q53GG5 RNU1-91P-201ENST00000364746 163 ntBASIC2.11□□□□□ -2.07
PDLIM3Q53GG5 RNU6-784P-201ENST00000384330 106 ntBASIC2.11□□□□□ -2.07
PDLIM3Q53GG5 RNU1-148P-201ENST00000384472 162 ntBASIC2.11□□□□□ -2.07
PDLIM3Q53GG5 MTCYBP4-201ENST00000401524 249 ntBASIC2.11□□□□□ -2.07
PDLIM3Q53GG5 Y_RNA.595-201ENST00000410403 105 ntBASIC2.11□□□□□ -2.07
PDLIM3Q53GG5 NCOR1P3-201ENST00000420479 303 ntBASIC2.11□□□□□ -2.07
PDLIM3Q53GG5 AC012306.1-201ENST00000423267 114 ntBASIC2.11□□□□□ -2.07
PDLIM3Q53GG5 HMGN2P23-201ENST00000456759 269 ntBASIC2.11□□□□□ -2.07
PDLIM3Q53GG5 SNORD5.1-201ENST00000458800 75 ntBASIC2.11□□□□□ -2.07
PDLIM3Q53GG5 AC087477.1-201ENST00000465747 340 ntBASIC2.11□□□□□ -2.07
PDLIM3Q53GG5 AF186996.7-201ENST00000492781 209 ntBASIC2.11□□□□□ -2.07
PDLIM3Q53GG5 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.11□□□□□ -2.07
PDLIM3Q53GG5 AC096725.1-201ENST00000514266 313 ntBASIC2.11□□□□□ -2.07
PDLIM3Q53GG5 RNA5SP282-201ENST00000516355 108 ntBASIC2.11□□□□□ -2.07
PDLIM3Q53GG5 SCARNA16.2-201ENST00000516520 172 ntBASIC2.11□□□□□ -2.07
PDLIM3Q53GG5 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC2.11□□□□□ -2.07
PDLIM3Q53GG5 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC2.11□□□□□ -2.07
PDLIM3Q53GG5 MIR4498-201ENST00000577599 66 ntBASIC2.11□□□□□ -2.07
PDLIM3Q53GG5 MIR3923-201ENST00000579521 83 ntBASIC2.11□□□□□ -2.07
PDLIM3Q53GG5 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC2.11□□□□□ -2.07
PDLIM3Q53GG5 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC2.11□□□□□ -2.07
PDLIM3Q53GG5 FGF7P1-201ENST00000582820 288 ntBASIC2.11□□□□□ -2.07
PDLIM3Q53GG5 MIR3136-201ENST00000583498 78 ntBASIC2.11□□□□□ -2.07
PDLIM3Q53GG5 AC078899.2-201ENST00000595282 212 ntBASIC2.11□□□□□ -2.07
PDLIM3Q53GG5 AL356157.2-201ENST00000605122 111 ntBASIC2.11□□□□□ -2.07
PDLIM3Q53GG5 AC009318.2-201ENST00000610917 651 ntBASIC2.11□□□□□ -2.07
PDLIM3Q53GG5 MIR6840-201ENST00000611937 71 ntBASIC2.11□□□□□ -2.07
PDLIM3Q53GG5 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
PDLIM3Q53GG5 RNU6-1286P-201ENST00000383871 107 ntBASIC2.1□□□□□ -2.07
PDLIM3Q53GG5 Y_RNA.387-201ENST00000383918 102 ntBASIC2.1□□□□□ -2.07
PDLIM3Q53GG5 RNU6-1297P-201ENST00000384415 104 ntBASIC2.1□□□□□ -2.07
PDLIM3Q53GG5 MIR32-201ENST00000384965 70 ntBASIC2.1□□□□□ -2.07
PDLIM3Q53GG5 SNORA46.1-201ENST00000391069 153 ntBASIC2.1□□□□□ -2.07
PDLIM3Q53GG5 RNA5SP181-201ENST00000410246 98 ntBASIC2.1□□□□□ -2.07
PDLIM3Q53GG5 RNU2-32P-201ENST00000411193 191 ntBASIC2.1□□□□□ -2.07
PDLIM3Q53GG5 DPH3P2-201ENST00000422618 250 ntBASIC2.1□□□□□ -2.07
PDLIM3Q53GG5 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.1□□□□□ -2.07
PDLIM3Q53GG5 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC2.1□□□□□ -2.07
PDLIM3Q53GG5 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC2.1□□□□□ -2.07
PDLIM3Q53GG5 AC079354.2-201ENST00000453523 154 ntBASIC2.1□□□□□ -2.07
PDLIM3Q53GG5 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC2.1□□□□□ -2.07
PDLIM3Q53GG5 Y_RNA.632-201ENST00000459189 102 ntBASIC2.1□□□□□ -2.07
PDLIM3Q53GG5 TOMM22P6-201ENST00000465035 409 ntBASIC2.1□□□□□ -2.07
PDLIM3Q53GG5 RPL23AP75-201ENST00000491601 451 ntBASIC2.1□□□□□ -2.07
PDLIM3Q53GG5 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC2.1□□□□□ -2.07
PDLIM3Q53GG5 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC2.1□□□□□ -2.07
PDLIM3Q53GG5 MTND3P22-201ENST00000510932 243 ntBASIC2.1□□□□□ -2.07
PDLIM3Q53GG5 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC2.1□□□□□ -2.07
PDLIM3Q53GG5 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC2.1□□□□□ -2.07
PDLIM3Q53GG5 RAB11AP2-201ENST00000545905 639 ntBASIC2.1□□□□□ -2.07
PDLIM3Q53GG5 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC2.1□□□□□ -2.07
PDLIM3Q53GG5 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC2.1□□□□□ -2.07
PDLIM3Q53GG5 AP000942.3-201ENST00000603702 160 ntBASIC2.1□□□□□ -2.07
PDLIM3Q53GG5 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC2.1□□□□□ -2.07
PDLIM3Q53GG5 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
PDLIM3Q53GG5 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.1□□□□□ -2.07
PDLIM3Q53GG5 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.09□□□□□ -2.07
PDLIM3Q53GG5 AP000560.1-201ENST00000624150 1937 ntBASIC2.09□□□□□ -2.07
PDLIM3Q53GG5 ZNF736P3Y-201ENST00000428264 1465 ntBASIC2.09□□□□□ -2.07
PDLIM3Q53GG5 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
PDLIM3Q53GG5 AC245060.5-201ENST00000610778 3293 ntBASIC2.09□□□□□ -2.07
PDLIM3Q53GG5 SNORD114-1-201ENST00000362705 72 ntBASIC2.09□□□□□ -2.07
PDLIM3Q53GG5 RNU6-593P-201ENST00000364716 112 ntBASIC2.09□□□□□ -2.07
PDLIM3Q53GG5 RNU6-310P-201ENST00000384655 107 ntBASIC2.09□□□□□ -2.07
PDLIM3Q53GG5 RNU6-174P-201ENST00000410406 106 ntBASIC2.09□□□□□ -2.07
PDLIM3Q53GG5 Y_RNA.646-201ENST00000410980 101 ntBASIC2.09□□□□□ -2.07
PDLIM3Q53GG5 AC022028.1-201ENST00000412054 408 ntBASIC2.09□□□□□ -2.07
PDLIM3Q53GG5 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.09□□□□□ -2.07
PDLIM3Q53GG5 MTCO3P29-201ENST00000432119 779 ntBASIC2.09□□□□□ -2.07
PDLIM3Q53GG5 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC2.09□□□□□ -2.07
PDLIM3Q53GG5 MTCO3P10-201ENST00000455912 772 ntBASIC2.09□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 156.5 ms