Protein–RNA interactions for Protein: Q15465

SHH, Sonic hedgehog protein, humanhuman

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHHQ15465 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC1.68□□□□□ -2.14
SHHQ15465 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC1.68□□□□□ -2.14
SHHQ15465 MTND3P10-201ENST00000450967 341 ntBASIC1.68□□□□□ -2.14
SHHQ15465 AL583843.1-201ENST00000456070 346 ntBASIC1.68□□□□□ -2.14
SHHQ15465 OARD1-209ENST00000471367 401 ntTSL 2 BASIC1.68□□□□□ -2.14
SHHQ15465 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC1.68□□□□□ -2.14
SHHQ15465 LRRC34P2-201ENST00000514850 553 ntBASIC1.68□□□□□ -2.14
SHHQ15465 RNU5B-3P-201ENST00000516601 115 ntBASIC1.68□□□□□ -2.14
SHHQ15465 RNA5SP137-201ENST00000516833 135 ntBASIC1.68□□□□□ -2.14
SHHQ15465 RNU6-1183P-201ENST00000517054 60 ntBASIC1.68□□□□□ -2.14
SHHQ15465 SNORA25.17-201ENST00000517184 124 ntBASIC1.68□□□□□ -2.14
SHHQ15465 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC1.68□□□□□ -2.14
SHHQ15465 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC1.68□□□□□ -2.14
SHHQ15465 COPS8P3-201ENST00000526024 482 ntBASIC1.68□□□□□ -2.14
SHHQ15465 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC1.68□□□□□ -2.14
SHHQ15465 AP005597.4-201ENST00000526762 229 ntBASIC1.68□□□□□ -2.14
SHHQ15465 AP000763.2-201ENST00000540641 163 ntBASIC1.68□□□□□ -2.14
SHHQ15465 AC079598.5-201ENST00000547460 117 ntBASIC1.68□□□□□ -2.14
SHHQ15465 AL355375.2-201ENST00000574825 175 ntBASIC1.68□□□□□ -2.14
SHHQ15465 POLR3GP2-201ENST00000588366 668 ntBASIC1.68□□□□□ -2.14
SHHQ15465 AC007229.1-201ENST00000590455 412 ntBASIC1.68□□□□□ -2.14
SHHQ15465 AL356055.1-201ENST00000602528 446 ntBASIC1.68□□□□□ -2.14
SHHQ15465 TPTEP1-208ENST00000636884 213 ntBASIC1.68□□□□□ -2.14
SHHQ15465 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
SHHQ15465 Z75746.1-201ENST00000440243 2080 ntBASIC1.67□□□□□ -2.14
SHHQ15465 AC008555.8-201ENST00000623602 2168 ntBASIC1.67□□□□□ -2.14
SHHQ15465 RNU6-797P-201ENST00000363101 109 ntBASIC1.67□□□□□ -2.14
SHHQ15465 Y_RNA.138-201ENST00000363462 102 ntBASIC1.67□□□□□ -2.14
SHHQ15465 Y_RNA.157-201ENST00000363638 102 ntBASIC1.67□□□□□ -2.14
SHHQ15465 Y_RNA.263-201ENST00000364659 114 ntBASIC1.67□□□□□ -2.14
SHHQ15465 RNU6-234P-201ENST00000365229 104 ntBASIC1.67□□□□□ -2.14
SHHQ15465 RNU6-393P-201ENST00000384475 107 ntBASIC1.67□□□□□ -2.14
SHHQ15465 RNU6-1179P-201ENST00000384667 107 ntBASIC1.67□□□□□ -2.14
SHHQ15465 RNU6-1009P-201ENST00000390996 107 ntBASIC1.67□□□□□ -2.14
SHHQ15465 RAP1BP3-201ENST00000407180 549 ntBASIC1.67□□□□□ -2.14
SHHQ15465 MORN2-203ENST00000409131 544 ntTSL 5 BASIC1.67□□□□□ -2.14
SHHQ15465 RNU6-1025P-201ENST00000410629 104 ntBASIC1.67□□□□□ -2.14
SHHQ15465 RNU2-41P-201ENST00000410991 178 ntBASIC1.67□□□□□ -2.14
SHHQ15465 MTND3P8-201ENST00000412909 339 ntBASIC1.67□□□□□ -2.14
SHHQ15465 AC097463.2-201ENST00000421074 142 ntBASIC1.67□□□□□ -2.14
SHHQ15465 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC1.67□□□□□ -2.14
SHHQ15465 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC1.67□□□□□ -2.14
SHHQ15465 CYP2C59P-201ENST00000457790 269 ntBASIC1.67□□□□□ -2.14
SHHQ15465 AC007547.1-201ENST00000462177 490 ntBASIC1.67□□□□□ -2.14
SHHQ15465 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC1.67□□□□□ -2.14
SHHQ15465 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC1.67□□□□□ -2.14
SHHQ15465 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC1.67□□□□□ -2.14
SHHQ15465 SMURF2P1-201ENST00000514992 481 ntBASIC1.67□□□□□ -2.14
SHHQ15465 RNU6-1332P-201ENST00000516666 104 ntBASIC1.67□□□□□ -2.14
SHHQ15465 RNU6-677P-201ENST00000516914 101 ntBASIC1.67□□□□□ -2.14
SHHQ15465 SNORA31.24-201ENST00000517232 57 ntBASIC1.67□□□□□ -2.14
SHHQ15465 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC1.67□□□□□ -2.14
SHHQ15465 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC1.67□□□□□ -2.14
SHHQ15465 AC104576.1-201ENST00000524225 88 ntBASIC1.67□□□□□ -2.14
SHHQ15465 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
SHHQ15465 AC025423.5-201ENST00000550230 219 ntBASIC1.67□□□□□ -2.14
SHHQ15465 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC1.67□□□□□ -2.14
SHHQ15465 MIR3618-201ENST00000580330 88 ntBASIC1.67□□□□□ -2.14
SHHQ15465 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC1.67□□□□□ -2.14
SHHQ15465 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.67□□□□□ -2.14
SHHQ15465 AL109918.3-201ENST00000603072 338 ntBASIC1.67□□□□□ -2.14
SHHQ15465 AC064836.2-201ENST00000609491 462 ntBASIC1.67□□□□□ -2.14
SHHQ15465 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC1.67□□□□□ -2.14
SHHQ15465 AC063943.3-201ENST00000615562 356 ntBASIC1.67□□□□□ -2.14
SHHQ15465 U6.42-201ENST00000618440 107 ntBASIC1.67□□□□□ -2.14
SHHQ15465 MIR5739-201ENST00000619803 80 ntBASIC1.67□□□□□ -2.14
SHHQ15465 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
SHHQ15465 AC073544.1-201ENST00000600110 1595 ntBASIC1.67□□□□□ -2.14
SHHQ15465 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC1.66□□□□□ -2.14
SHHQ15465 RNU1-72P-201ENST00000362976 153 ntBASIC1.66□□□□□ -2.14
SHHQ15465 Y_RNA.212-201ENST00000364177 102 ntBASIC1.66□□□□□ -2.14
SHHQ15465 Y_RNA.216-201ENST00000364205 93 ntBASIC1.66□□□□□ -2.14
SHHQ15465 RNU6-266P-201ENST00000364225 107 ntBASIC1.66□□□□□ -2.14
SHHQ15465 Y_RNA.339-201ENST00000365325 102 ntBASIC1.66□□□□□ -2.14
SHHQ15465 Y_RNA.374-201ENST00000365606 101 ntBASIC1.66□□□□□ -2.14
SHHQ15465 Y_RNA.414-201ENST00000384011 101 ntBASIC1.66□□□□□ -2.14
SHHQ15465 SNORD116-29-201ENST00000384516 83 ntBASIC1.66□□□□□ -2.14
SHHQ15465 RNU4-46P-201ENST00000410818 138 ntBASIC1.66□□□□□ -2.14
SHHQ15465 EDDM3CP-201ENST00000415977 425 ntBASIC1.66□□□□□ -2.14
SHHQ15465 AC016831.2-201ENST00000417179 352 ntBASIC1.66□□□□□ -2.14
SHHQ15465 MTCO3P46-201ENST00000425787 232 ntBASIC1.66□□□□□ -2.14
SHHQ15465 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC1.66□□□□□ -2.14
SHHQ15465 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.66□□□□□ -2.14
SHHQ15465 MTND1P11-201ENST00000456661 876 ntBASIC1.66□□□□□ -2.14
SHHQ15465 RNU6-189P-201ENST00000516120 101 ntBASIC1.66□□□□□ -2.14
SHHQ15465 RNU6-864P-201ENST00000516256 108 ntBASIC1.66□□□□□ -2.14
SHHQ15465 Y_RNA.675-201ENST00000516389 149 ntBASIC1.66□□□□□ -2.14
SHHQ15465 RNU6-143P-201ENST00000516942 93 ntBASIC1.66□□□□□ -2.14
SHHQ15465 SNORA31.23-201ENST00000517219 133 ntBASIC1.66□□□□□ -2.14
SHHQ15465 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC1.66□□□□□ -2.14
SHHQ15465 AP005639.2-201ENST00000527592 928 ntBASIC1.66□□□□□ -2.14
SHHQ15465 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC1.66□□□□□ -2.14
SHHQ15465 LINC00933-203ENST00000559812 219 ntBASIC1.66□□□□□ -2.14
SHHQ15465 MIR4285-201ENST00000581001 85 ntBASIC1.66□□□□□ -2.14
SHHQ15465 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC1.66□□□□□ -2.14
SHHQ15465 AL096840.1-201ENST00000603287 93 ntBASIC1.66□□□□□ -2.14
SHHQ15465 ELOCP5-201ENST00000604924 333 ntBASIC1.66□□□□□ -2.14
SHHQ15465 AL050343.2-201ENST00000607338 280 ntBASIC1.66□□□□□ -2.14
SHHQ15465 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.66□□□□□ -2.14
SHHQ15465 AL627230.6-201ENST00000611129 280 ntBASIC1.66□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms