Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 AP006437.1-201ENST00000641440 3685 ntBASIC3.01□□□□□ -1.93
COL4A3Q01955 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
COL4A3Q01955 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
COL4A3Q01955 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.01□□□□□ -1.93
COL4A3Q01955 UBE2WP1-201ENST00000362030 340 ntBASIC3.01□□□□□ -1.93
COL4A3Q01955 MIR410-201ENST00000362222 80 ntBASIC3.01□□□□□ -1.93
COL4A3Q01955 SNORA25.1-201ENST00000362326 128 ntBASIC3.01□□□□□ -1.93
COL4A3Q01955 Y_RNA.164-201ENST00000363709 102 ntBASIC3.01□□□□□ -1.93
COL4A3Q01955 RNU6-1141P-201ENST00000364520 107 ntBASIC3.01□□□□□ -1.93
COL4A3Q01955 U8.10-201ENST00000384260 133 ntBASIC3.01□□□□□ -1.93
COL4A3Q01955 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC3.01□□□□□ -1.93
COL4A3Q01955 AP001025.1-201ENST00000486139 332 ntBASIC3.01□□□□□ -1.93
COL4A3Q01955 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC3.01□□□□□ -1.93
COL4A3Q01955 MRPS18CP4-201ENST00000535821 231 ntBASIC3.01□□□□□ -1.93
COL4A3Q01955 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC3.01□□□□□ -1.93
COL4A3Q01955 ELOCP29-201ENST00000588193 334 ntBASIC3.01□□□□□ -1.93
COL4A3Q01955 AC110741.2-201ENST00000605278 268 ntBASIC3.01□□□□□ -1.93
COL4A3Q01955 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC3.01□□□□□ -1.93
COL4A3Q01955 U6.106-201ENST00000636360 105 ntBASIC3.01□□□□□ -1.93
COL4A3Q01955 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC3□□□□□ -1.93
COL4A3Q01955 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC3□□□□□ -1.93
COL4A3Q01955 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3□□□□□ -1.93
COL4A3Q01955 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3□□□□□ -1.93
COL4A3Q01955 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
COL4A3Q01955 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
COL4A3Q01955 RNU6-50P-201ENST00000362356 103 ntBASIC3□□□□□ -1.93
COL4A3Q01955 RNU6-859P-201ENST00000362728 107 ntBASIC3□□□□□ -1.93
COL4A3Q01955 Y_RNA.383-201ENST00000383855 97 ntBASIC3□□□□□ -1.93
COL4A3Q01955 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC3□□□□□ -1.93
COL4A3Q01955 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC3□□□□□ -1.93
COL4A3Q01955 POLR2KP2-201ENST00000438155 177 ntBASIC3□□□□□ -1.93
COL4A3Q01955 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC3□□□□□ -1.93
COL4A3Q01955 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC3□□□□□ -1.93
COL4A3Q01955 RNA5SP468-201ENST00000516782 93 ntBASIC3□□□□□ -1.93
COL4A3Q01955 AC027176.1-201ENST00000560204 514 ntBASIC3□□□□□ -1.93
COL4A3Q01955 MIR5571-201ENST00000577998 113 ntBASIC3□□□□□ -1.93
COL4A3Q01955 MIR4423-201ENST00000580922 80 ntBASIC3□□□□□ -1.93
COL4A3Q01955 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC3□□□□□ -1.93
COL4A3Q01955 AL713866.2-201ENST00000603579 219 ntBASIC3□□□□□ -1.93
COL4A3Q01955 SNORA43.4-201ENST00000629559 138 ntBASIC3□□□□□ -1.93
COL4A3Q01955 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3□□□□□ -1.93
COL4A3Q01955 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
COL4A3Q01955 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC3□□□□□ -1.93
COL4A3Q01955 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC2.99□□□□□ -1.93
COL4A3Q01955 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
COL4A3Q01955 Y_RNA.82-201ENST00000363000 102 ntBASIC2.99□□□□□ -1.93
COL4A3Q01955 Y_RNA.92-201ENST00000363043 102 ntBASIC2.99□□□□□ -1.93
COL4A3Q01955 Y_RNA.170-201ENST00000363746 110 ntBASIC2.99□□□□□ -1.93
COL4A3Q01955 SNORD115-8-201ENST00000363856 82 ntBASIC2.99□□□□□ -1.93
COL4A3Q01955 Y_RNA.235-201ENST00000364412 102 ntBASIC2.99□□□□□ -1.93
COL4A3Q01955 Y_RNA.306-201ENST00000365015 102 ntBASIC2.99□□□□□ -1.93
COL4A3Q01955 SNORD115-38-201ENST00000365037 82 ntBASIC2.99□□□□□ -1.93
COL4A3Q01955 Y_RNA.312-201ENST00000365089 102 ntBASIC2.99□□□□□ -1.93
COL4A3Q01955 Y_RNA.322-201ENST00000365151 102 ntBASIC2.99□□□□□ -1.93
COL4A3Q01955 Y_RNA.331-201ENST00000365267 102 ntBASIC2.99□□□□□ -1.93
COL4A3Q01955 Y_RNA.446-201ENST00000384178 104 ntBASIC2.99□□□□□ -1.93
COL4A3Q01955 Y_RNA.570-201ENST00000384750 101 ntBASIC2.99□□□□□ -1.93
COL4A3Q01955 NDUFS5P4-201ENST00000412983 318 ntBASIC2.99□□□□□ -1.93
COL4A3Q01955 MTATP6P29-201ENST00000415057 132 ntBASIC2.99□□□□□ -1.93
COL4A3Q01955 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC2.99□□□□□ -1.93
COL4A3Q01955 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.99□□□□□ -1.93
COL4A3Q01955 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2.99□□□□□ -1.93
COL4A3Q01955 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC2.99□□□□□ -1.93
COL4A3Q01955 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC2.99□□□□□ -1.93
COL4A3Q01955 Y_RNA.650-201ENST00000459002 102 ntBASIC2.99□□□□□ -1.93
COL4A3Q01955 TRAPPC2P7-201ENST00000509650 231 ntBASIC2.99□□□□□ -1.93
COL4A3Q01955 SNORA64.4-201ENST00000516632 81 ntBASIC2.99□□□□□ -1.93
COL4A3Q01955 RNU6-567P-201ENST00000516746 107 ntBASIC2.99□□□□□ -1.93
COL4A3Q01955 Y_RNA.777-201ENST00000516982 102 ntBASIC2.99□□□□□ -1.93
COL4A3Q01955 SNORA31.23-201ENST00000517219 133 ntBASIC2.99□□□□□ -1.93
COL4A3Q01955 RPL21P9-201ENST00000556149 474 ntBASIC2.99□□□□□ -1.93
COL4A3Q01955 Y_RNA.771-201ENST00000598668 102 ntBASIC2.99□□□□□ -1.93
COL4A3Q01955 AC011921.3-201ENST00000605540 361 ntBASIC2.99□□□□□ -1.93
COL4A3Q01955 Y_RNA.789-201ENST00000622480 102 ntBASIC2.99□□□□□ -1.93
COL4A3Q01955 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
COL4A3Q01955 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC2.99□□□□□ -1.93
COL4A3Q01955 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.99□□□□□ -1.93
COL4A3Q01955 RNU6-600P-201ENST00000362524 99 ntBASIC2.98□□□□□ -1.93
COL4A3Q01955 Y_RNA.233-201ENST00000364407 101 ntBASIC2.98□□□□□ -1.93
COL4A3Q01955 RNU1-100P-201ENST00000365255 165 ntBASIC2.98□□□□□ -1.93
COL4A3Q01955 RNA5SP240-201ENST00000365355 128 ntBASIC2.98□□□□□ -1.93
COL4A3Q01955 Y_RNA.418-201ENST00000384029 102 ntBASIC2.98□□□□□ -1.93
COL4A3Q01955 RNU6-514P-201ENST00000384208 107 ntBASIC2.98□□□□□ -1.93
COL4A3Q01955 RNU6-1035P-201ENST00000384477 107 ntBASIC2.98□□□□□ -1.93
COL4A3Q01955 MIR487A-201ENST00000385009 80 ntBASIC2.98□□□□□ -1.93
COL4A3Q01955 RNU6-1001P-201ENST00000411265 100 ntBASIC2.98□□□□□ -1.93
COL4A3Q01955 AC146507.2-201ENST00000460608 476 ntBASIC2.98□□□□□ -1.93
COL4A3Q01955 AC078918.1-201ENST00000498515 228 ntBASIC2.98□□□□□ -1.93
COL4A3Q01955 SNORA40.9-201ENST00000515895 93 ntBASIC2.98□□□□□ -1.93
COL4A3Q01955 RNU6-581P-201ENST00000516214 105 ntBASIC2.98□□□□□ -1.93
COL4A3Q01955 RNY3P16-201ENST00000516338 101 ntBASIC2.98□□□□□ -1.93
COL4A3Q01955 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC2.98□□□□□ -1.93
COL4A3Q01955 AC009163.5-201ENST00000575421 637 ntBASIC2.98□□□□□ -1.93
COL4A3Q01955 MIR548AI-201ENST00000579940 88 ntBASIC2.98□□□□□ -1.93
COL4A3Q01955 AC005176.2-201ENST00000596933 147 ntBASIC2.98□□□□□ -1.93
COL4A3Q01955 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC2.98□□□□□ -1.93
COL4A3Q01955 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC2.98□□□□□ -1.93
COL4A3Q01955 AC064859.1-201ENST00000624741 174 ntBASIC2.98□□□□□ -1.93
COL4A3Q01955 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC2.98□□□□□ -1.93
COL4A3Q01955 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.98□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 122 ms