Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 RNU6-290P-201ENST00000365212 101 ntBASIC2.65□□□□□ -1.99
HOXA4Q00056 Y_RNA.352-201ENST00000365439 102 ntBASIC2.65□□□□□ -1.99
HOXA4Q00056 RNU6-793P-201ENST00000384233 104 ntBASIC2.65□□□□□ -1.99
HOXA4Q00056 Y_RNA.570-201ENST00000384750 101 ntBASIC2.65□□□□□ -1.99
HOXA4Q00056 AL512633.1-201ENST00000399931 655 ntBASIC2.65□□□□□ -1.99
HOXA4Q00056 ELOCP21-201ENST00000412558 336 ntBASIC2.65□□□□□ -1.99
HOXA4Q00056 AL353705.1-201ENST00000433468 480 ntBASIC2.65□□□□□ -1.99
HOXA4Q00056 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC2.65□□□□□ -1.99
HOXA4Q00056 SETP5-201ENST00000437270 562 ntBASIC2.65□□□□□ -1.99
HOXA4Q00056 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC2.65□□□□□ -1.99
HOXA4Q00056 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2.65□□□□□ -1.99
HOXA4Q00056 RPS3P1-201ENST00000456781 192 ntBASIC2.65□□□□□ -1.99
HOXA4Q00056 AC117440.1-201ENST00000474107 571 ntBASIC2.65□□□□□ -1.99
HOXA4Q00056 MRPS36P2-201ENST00000512569 299 ntBASIC2.65□□□□□ -1.99
HOXA4Q00056 SERF1AP1-201ENST00000514575 187 ntBASIC2.65□□□□□ -1.99
HOXA4Q00056 SCARNA17.1-201ENST00000516211 143 ntBASIC2.65□□□□□ -1.99
HOXA4Q00056 SCARNA17.2-201ENST00000516334 143 ntBASIC2.65□□□□□ -1.99
HOXA4Q00056 RN7SKP57-201ENST00000517248 293 ntBASIC2.65□□□□□ -1.99
HOXA4Q00056 EIF4A1P12-201ENST00000551910 141 ntBASIC2.65□□□□□ -1.99
HOXA4Q00056 AC018448.1-201ENST00000552843 316 ntBASIC2.65□□□□□ -1.99
HOXA4Q00056 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.65□□□□□ -1.99
HOXA4Q00056 YPEL5P2-201ENST00000605553 359 ntBASIC2.65□□□□□ -1.99
HOXA4Q00056 SCARNA17.4-201ENST00000614296 143 ntBASIC2.65□□□□□ -1.99
HOXA4Q00056 UCA1.1-201ENST00000620952 75 ntBASIC2.65□□□□□ -1.99
HOXA4Q00056 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
HOXA4Q00056 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC2.65□□□□□ -1.99
HOXA4Q00056 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC2.65□□□□□ -1.99
HOXA4Q00056 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC2.65□□□□□ -1.99
HOXA4Q00056 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
HOXA4Q00056 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC2.64□□□□□ -1.99
HOXA4Q00056 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.64□□□□□ -1.99
HOXA4Q00056 RNU6-1266P-201ENST00000362794 105 ntBASIC2.64□□□□□ -1.99
HOXA4Q00056 CD24P4-201ENST00000382840 243 ntBASIC2.64□□□□□ -1.99
HOXA4Q00056 RNU6-245P-201ENST00000384020 107 ntBASIC2.64□□□□□ -1.99
HOXA4Q00056 SNORA54-201ENST00000384281 123 ntBASIC2.64□□□□□ -1.99
HOXA4Q00056 Y_RNA.498-201ENST00000384460 102 ntBASIC2.64□□□□□ -1.99
HOXA4Q00056 Y_RNA.515-201ENST00000384535 112 ntBASIC2.64□□□□□ -1.99
HOXA4Q00056 RNU1-101P-201ENST00000391171 127 ntBASIC2.64□□□□□ -1.99
HOXA4Q00056 AC004866.1-201ENST00000411748 78 ntBASIC2.64□□□□□ -1.99
HOXA4Q00056 AC027124.2-201ENST00000428249 105 ntBASIC2.64□□□□□ -1.99
HOXA4Q00056 UQCRBP2-201ENST00000447827 297 ntBASIC2.64□□□□□ -1.99
HOXA4Q00056 AC007395.1-201ENST00000451333 677 ntBASIC2.64□□□□□ -1.99
HOXA4Q00056 SUMO1P2-201ENST00000452524 304 ntBASIC2.64□□□□□ -1.99
HOXA4Q00056 RPL23AP3-201ENST00000453844 468 ntBASIC2.64□□□□□ -1.99
HOXA4Q00056 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC2.64□□□□□ -1.99
HOXA4Q00056 RAC1P5-201ENST00000512182 576 ntBASIC2.64□□□□□ -1.99
HOXA4Q00056 RNU6-966P-201ENST00000516479 104 ntBASIC2.64□□□□□ -1.99
HOXA4Q00056 HSPE1P18-201ENST00000517602 280 ntBASIC2.64□□□□□ -1.99
HOXA4Q00056 DEFB131C-201ENST00000528817 165 ntBASIC2.64□□□□□ -1.99
HOXA4Q00056 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.64□□□□□ -1.99
HOXA4Q00056 AC026470.2-201ENST00000561492 181 ntBASIC2.64□□□□□ -1.99
HOXA4Q00056 AC233702.2-202ENST00000562547 291 ntBASIC2.64□□□□□ -1.99
HOXA4Q00056 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC2.64□□□□□ -1.99
HOXA4Q00056 AC005176.2-201ENST00000596933 147 ntBASIC2.64□□□□□ -1.99
HOXA4Q00056 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC2.64□□□□□ -1.99
HOXA4Q00056 AL356575.1-201ENST00000603008 283 ntBASIC2.64□□□□□ -1.99
HOXA4Q00056 SNRPGP20-201ENST00000604477 205 ntBASIC2.64□□□□□ -1.99
HOXA4Q00056 AL365434.2-201ENST00000607979 234 ntBASIC2.64□□□□□ -1.99
HOXA4Q00056 AC099654.7-201ENST00000635788 2127 ntBASIC2.64□□□□□ -1.99
HOXA4Q00056 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.64□□□□□ -1.99
HOXA4Q00056 AC058791.1-201ENST00000608412 3198 ntBASIC2.64□□□□□ -1.99
HOXA4Q00056 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
HOXA4Q00056 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.64□□□□□ -1.99
HOXA4Q00056 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC2.63□□□□□ -1.99
HOXA4Q00056 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC2.63□□□□□ -1.99
HOXA4Q00056 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
HOXA4Q00056 AL359854.1-201ENST00000614203 1594 ntBASIC2.63□□□□□ -1.99
HOXA4Q00056 U3.9-201ENST00000363823 204 ntBASIC2.63□□□□□ -1.99
HOXA4Q00056 Y_RNA.446-201ENST00000384178 104 ntBASIC2.63□□□□□ -1.99
HOXA4Q00056 RNU6-21P-201ENST00000384710 107 ntBASIC2.63□□□□□ -1.99
HOXA4Q00056 Y_RNA.569-201ENST00000384749 103 ntBASIC2.63□□□□□ -1.99
HOXA4Q00056 MIR591-201ENST00000385290 95 ntBASIC2.63□□□□□ -1.99
HOXA4Q00056 SNORA12-201ENST00000391162 147 ntBASIC2.63□□□□□ -1.99
HOXA4Q00056 AL033519.2-201ENST00000403958 392 ntBASIC2.63□□□□□ -1.99
HOXA4Q00056 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC2.63□□□□□ -1.99
HOXA4Q00056 EIF4EP4-201ENST00000424916 578 ntBASIC2.63□□□□□ -1.99
HOXA4Q00056 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC2.63□□□□□ -1.99
HOXA4Q00056 AC004386.2-201ENST00000441858 148 ntBASIC2.63□□□□□ -1.99
HOXA4Q00056 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC2.63□□□□□ -1.99
HOXA4Q00056 RNU6-625P-201ENST00000459412 107 ntBASIC2.63□□□□□ -1.99
HOXA4Q00056 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC2.63□□□□□ -1.99
HOXA4Q00056 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC2.63□□□□□ -1.99
HOXA4Q00056 SNORA64.4-201ENST00000516632 81 ntBASIC2.63□□□□□ -1.99
HOXA4Q00056 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC2.63□□□□□ -1.99
HOXA4Q00056 CYCSP23-201ENST00000519781 313 ntBASIC2.63□□□□□ -1.99
HOXA4Q00056 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC2.63□□□□□ -1.99
HOXA4Q00056 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC2.63□□□□□ -1.99
HOXA4Q00056 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC2.63□□□□□ -1.99
HOXA4Q00056 MIR4765-201ENST00000585007 77 ntBASIC2.63□□□□□ -1.99
HOXA4Q00056 AC011471.1-201ENST00000585766 187 ntBASIC2.63□□□□□ -1.99
HOXA4Q00056 AC008749.1-201ENST00000597650 306 ntBASIC2.63□□□□□ -1.99
HOXA4Q00056 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC2.63□□□□□ -1.99
HOXA4Q00056 AC004467.1-201ENST00000615678 330 ntBASIC2.63□□□□□ -1.99
HOXA4Q00056 AC127459.3-201ENST00000624328 466 ntBASIC2.63□□□□□ -1.99
HOXA4Q00056 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC2.63□□□□□ -1.99
HOXA4Q00056 U6.98-201ENST00000637157 84 ntBASIC2.63□□□□□ -1.99
HOXA4Q00056 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC2.63□□□□□ -1.99
HOXA4Q00056 AC069528.2-201ENST00000624849 1991 ntBASIC2.63□□□□□ -1.99
HOXA4Q00056 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC2.63□□□□□ -1.99
HOXA4Q00056 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC2.63□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 109.1 ms