Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 RNU6-991P-201ENST00000516168 107 ntBASIC1.61□□□□□ -2.15
LIM2P55344 MTND1P35-201ENST00000526739 508 ntBASIC1.61□□□□□ -2.15
LIM2P55344 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC1.61□□□□□ -2.15
LIM2P55344 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC1.61□□□□□ -2.15
LIM2P55344 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC1.61□□□□□ -2.15
LIM2P55344 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC1.61□□□□□ -2.15
LIM2P55344 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC1.61□□□□□ -2.15
LIM2P55344 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC1.61□□□□□ -2.15
LIM2P55344 AC104984.5-201ENST00000586878 94 ntBASIC1.61□□□□□ -2.15
LIM2P55344 AL096840.1-201ENST00000603287 93 ntBASIC1.61□□□□□ -2.15
LIM2P55344 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC1.61□□□□□ -2.15
LIM2P55344 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC1.61□□□□□ -2.15
LIM2P55344 AC024614.3-201ENST00000637860 256 ntBASIC1.61□□□□□ -2.15
LIM2P55344 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.61□□□□□ -2.15
LIM2P55344 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC1.6□□□□□ -2.15
LIM2P55344 RNA5SP276-201ENST00000362580 94 ntBASIC1.6□□□□□ -2.15
LIM2P55344 RNU6-562P-201ENST00000362731 107 ntBASIC1.6□□□□□ -2.15
LIM2P55344 Y_RNA.89-201ENST00000363031 102 ntBASIC1.6□□□□□ -2.15
LIM2P55344 RNU6-1090P-201ENST00000364065 94 ntBASIC1.6□□□□□ -2.15
LIM2P55344 Y_RNA.414-201ENST00000384011 101 ntBASIC1.6□□□□□ -2.15
LIM2P55344 SNORA29-201ENST00000384183 140 ntBASIC1.6□□□□□ -2.15
LIM2P55344 RNU6-378P-201ENST00000384324 107 ntBASIC1.6□□□□□ -2.15
LIM2P55344 RNU6-1215P-201ENST00000384441 102 ntBASIC1.6□□□□□ -2.15
LIM2P55344 Y_RNA.516-201ENST00000384541 124 ntBASIC1.6□□□□□ -2.15
LIM2P55344 SNORA8-201ENST00000384574 139 ntBASIC1.6□□□□□ -2.15
LIM2P55344 AL627390.1-201ENST00000396055 340 ntBASIC1.6□□□□□ -2.15
LIM2P55344 MTND3P9-201ENST00000429526 346 ntBASIC1.6□□□□□ -2.15
LIM2P55344 AL589823.1-201ENST00000429577 183 ntBASIC1.6□□□□□ -2.15
LIM2P55344 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC1.6□□□□□ -2.15
LIM2P55344 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.6□□□□□ -2.15
LIM2P55344 AC016925.1-201ENST00000458303 298 ntBASIC1.6□□□□□ -2.15
LIM2P55344 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC1.6□□□□□ -2.15
LIM2P55344 MRPS17P9-201ENST00000511924 393 ntBASIC1.6□□□□□ -2.15
LIM2P55344 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.6□□□□□ -2.15
LIM2P55344 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC1.6□□□□□ -2.15
LIM2P55344 RMST_3.1-201ENST00000611651 109 ntBASIC1.6□□□□□ -2.15
LIM2P55344 AL138726.1-201ENST00000614873 333 ntBASIC1.6□□□□□ -2.15
LIM2P55344 AC090517.2-201ENST00000614966 680 ntBASIC1.6□□□□□ -2.15
LIM2P55344 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC1.6□□□□□ -2.15
LIM2P55344 AL359851.1-201ENST00000569460 4997 ntBASIC1.6□□□□□ -2.15
LIM2P55344 LINC02555-201ENST00000563933 1951 ntBASIC1.59□□□□□ -2.15
LIM2P55344 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.15
LIM2P55344 CBX3P1-201ENST00000325243 554 ntBASIC1.59□□□□□ -2.15
LIM2P55344 RNU6-743P-201ENST00000364151 106 ntBASIC1.59□□□□□ -2.15
LIM2P55344 Y_RNA.373-201ENST00000365600 103 ntBASIC1.59□□□□□ -2.15
LIM2P55344 SNORA32.2-201ENST00000384049 122 ntBASIC1.59□□□□□ -2.15
LIM2P55344 RNU6-968P-201ENST00000384076 107 ntBASIC1.59□□□□□ -2.15
LIM2P55344 SNORA36A-201ENST00000384221 132 ntBASIC1.59□□□□□ -2.15
LIM2P55344 MIR504-201ENST00000385065 83 ntBASIC1.59□□□□□ -2.15
LIM2P55344 AC244636.1-201ENST00000421152 228 ntBASIC1.59□□□□□ -2.15
LIM2P55344 AL358453.1-201ENST00000422522 250 ntBASIC1.59□□□□□ -2.15
LIM2P55344 BX510359.4-201ENST00000423750 193 ntBASIC1.59□□□□□ -2.15
LIM2P55344 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC1.59□□□□□ -2.15
LIM2P55344 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC1.59□□□□□ -2.15
LIM2P55344 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC1.59□□□□□ -2.15
LIM2P55344 RPS29P25-201ENST00000481709 171 ntBASIC1.59□□□□□ -2.15
LIM2P55344 SNORA25.15-201ENST00000516487 89 ntBASIC1.59□□□□□ -2.15
LIM2P55344 RNU6-256P-201ENST00000516747 97 ntBASIC1.59□□□□□ -2.15
LIM2P55344 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC1.59□□□□□ -2.15
LIM2P55344 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC1.59□□□□□ -2.15
LIM2P55344 MIR4299-201ENST00000577899 72 ntBASIC1.59□□□□□ -2.15
LIM2P55344 AC023043.2-201ENST00000589678 1026 ntBASIC1.59□□□□□ -2.15
LIM2P55344 AC243960.4-201ENST00000600532 288 ntBASIC1.59□□□□□ -2.15
LIM2P55344 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.59□□□□□ -2.15
LIM2P55344 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.15
LIM2P55344 AL773524.1-201ENST00000614065 229 ntBASIC1.59□□□□□ -2.15
LIM2P55344 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC1.59□□□□□ -2.15
LIM2P55344 AC130454.1-201ENST00000622948 401 ntBASIC1.59□□□□□ -2.15
LIM2P55344 AC091932.3-201ENST00000624223 323 ntBASIC1.59□□□□□ -2.15
LIM2P55344 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC1.59□□□□□ -2.15
LIM2P55344 AC131280.1-202ENST00000624067 4211 ntBASIC1.58□□□□□ -2.16
LIM2P55344 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC1.58□□□□□ -2.16
LIM2P55344 RNU6-23P-201ENST00000363283 107 ntBASIC1.58□□□□□ -2.16
LIM2P55344 Y_RNA.123-201ENST00000363338 102 ntBASIC1.58□□□□□ -2.16
LIM2P55344 RNU6-534P-201ENST00000364877 106 ntBASIC1.58□□□□□ -2.16
LIM2P55344 Y_RNA.554-201ENST00000384672 102 ntBASIC1.58□□□□□ -2.16
LIM2P55344 RNU11-3P-201ENST00000391111 133 ntBASIC1.58□□□□□ -2.16
LIM2P55344 RNU6-332P-201ENST00000391193 108 ntBASIC1.58□□□□□ -2.16
LIM2P55344 RNU2-41P-201ENST00000410991 178 ntBASIC1.58□□□□□ -2.16
LIM2P55344 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC1.58□□□□□ -2.16
LIM2P55344 MTCO3P18-201ENST00000440206 761 ntBASIC1.58□□□□□ -2.16
LIM2P55344 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC1.58□□□□□ -2.16
LIM2P55344 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC1.58□□□□□ -2.16
LIM2P55344 AC007215.1-201ENST00000464893 276 ntBASIC1.58□□□□□ -2.16
LIM2P55344 RPS23P5-201ENST00000495419 428 ntBASIC1.58□□□□□ -2.16
LIM2P55344 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC1.58□□□□□ -2.16
LIM2P55344 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.58□□□□□ -2.16
LIM2P55344 RNU5F-4P-201ENST00000516581 114 ntBASIC1.58□□□□□ -2.16
LIM2P55344 IGHVII-53-1-201ENST00000519538 255 ntBASIC1.58□□□□□ -2.16
LIM2P55344 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.58□□□□□ -2.16
LIM2P55344 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC1.58□□□□□ -2.16
LIM2P55344 MIR3122-201ENST00000577243 73 ntBASIC1.58□□□□□ -2.16
LIM2P55344 MIR4255-201ENST00000579351 72 ntBASIC1.58□□□□□ -2.16
LIM2P55344 AC005786.1-201ENST00000588553 154 ntBASIC1.58□□□□□ -2.16
LIM2P55344 MIR502-201ENST00000606349 86 ntBASIC1.58□□□□□ -2.16
LIM2P55344 MIR3688-2-201ENST00000636963 87 ntBASIC1.58□□□□□ -2.16
LIM2P55344 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
LIM2P55344 CENPCP1-201ENST00000533085 2578 ntBASIC1.57□□□□□ -2.16
LIM2P55344 SNORD115-3-201ENST00000363100 82 ntBASIC1.57□□□□□ -2.16
LIM2P55344 RNU4-12P-201ENST00000365233 139 ntBASIC1.57□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 84 ms