Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC1.83□□□□□ -2.12
PTPN4P29074 VN1R36P-201ENST00000414936 291 ntBASIC1.83□□□□□ -2.12
PTPN4P29074 EIF4EP2-201ENST00000422816 654 ntBASIC1.83□□□□□ -2.12
PTPN4P29074 AL513185.2-201ENST00000425543 193 ntBASIC1.83□□□□□ -2.12
PTPN4P29074 MTCO3P18-201ENST00000440206 761 ntBASIC1.83□□□□□ -2.12
PTPN4P29074 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC1.83□□□□□ -2.12
PTPN4P29074 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.83□□□□□ -2.12
PTPN4P29074 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC1.83□□□□□ -2.12
PTPN4P29074 RPS29P27-201ENST00000463711 170 ntBASIC1.83□□□□□ -2.12
PTPN4P29074 AC145146.1-201ENST00000496370 254 ntBASIC1.83□□□□□ -2.12
PTPN4P29074 TRBVA-201ENST00000498804 316 ntBASIC1.83□□□□□ -2.12
PTPN4P29074 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC1.83□□□□□ -2.12
PTPN4P29074 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1.83□□□□□ -2.12
PTPN4P29074 AC005741.1-201ENST00000511094 432 ntBASIC1.83□□□□□ -2.12
PTPN4P29074 SNORA31.16-201ENST00000516773 139 ntBASIC1.83□□□□□ -2.12
PTPN4P29074 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC1.83□□□□□ -2.12
PTPN4P29074 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC1.83□□□□□ -2.12
PTPN4P29074 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC1.83□□□□□ -2.12
PTPN4P29074 CYP4A27P-201ENST00000567218 190 ntBASIC1.83□□□□□ -2.12
PTPN4P29074 AL078605.1-201ENST00000603529 500 ntBASIC1.83□□□□□ -2.12
PTPN4P29074 AP000907.4-201ENST00000604143 237 ntBASIC1.83□□□□□ -2.12
PTPN4P29074 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
PTPN4P29074 RMST_6.1-201ENST00000611980 203 ntBASIC1.83□□□□□ -2.12
PTPN4P29074 AC063943.3-201ENST00000615562 356 ntBASIC1.83□□□□□ -2.12
PTPN4P29074 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.83□□□□□ -2.12
PTPN4P29074 SNORA43.4-201ENST00000629559 138 ntBASIC1.83□□□□□ -2.12
PTPN4P29074 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.83□□□□□ -2.12
PTPN4P29074 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC1.82□□□□□ -2.12
PTPN4P29074 RNU4-15P-201ENST00000362613 141 ntBASIC1.82□□□□□ -2.12
PTPN4P29074 U3.9-201ENST00000363823 204 ntBASIC1.82□□□□□ -2.12
PTPN4P29074 RNU6-1317P-201ENST00000364582 104 ntBASIC1.82□□□□□ -2.12
PTPN4P29074 Y_RNA.414-201ENST00000384011 101 ntBASIC1.82□□□□□ -2.12
PTPN4P29074 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.82□□□□□ -2.12
PTPN4P29074 RNU6ATAC15P-201ENST00000408279 121 ntBASIC1.82□□□□□ -2.12
PTPN4P29074 RNU6-1148P-201ENST00000410992 104 ntBASIC1.82□□□□□ -2.12
PTPN4P29074 ZNF885P-201ENST00000420174 1098 ntBASIC1.82□□□□□ -2.12
PTPN4P29074 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.82□□□□□ -2.12
PTPN4P29074 USP9YP28-201ENST00000435142 589 ntBASIC1.82□□□□□ -2.12
PTPN4P29074 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC1.82□□□□□ -2.12
PTPN4P29074 FGF7P6-202ENST00000451282 293 ntBASIC1.82□□□□□ -2.12
PTPN4P29074 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC1.82□□□□□ -2.12
PTPN4P29074 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC1.82□□□□□ -2.12
PTPN4P29074 RPL9P9-202ENST00000466501 579 ntBASIC1.82□□□□□ -2.12
PTPN4P29074 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC1.82□□□□□ -2.12
PTPN4P29074 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC1.82□□□□□ -2.12
PTPN4P29074 AC025465.4-201ENST00000513422 638 ntBASIC1.82□□□□□ -2.12
PTPN4P29074 RNU6-1314P-201ENST00000517139 104 ntBASIC1.82□□□□□ -2.12
PTPN4P29074 AC026371.1-201ENST00000551867 419 ntBASIC1.82□□□□□ -2.12
PTPN4P29074 MIR4713-201ENST00000582691 75 ntBASIC1.82□□□□□ -2.12
PTPN4P29074 AC146944.4-201ENST00000602697 718 ntBASIC1.82□□□□□ -2.12
PTPN4P29074 SNRPGP19-201ENST00000603826 189 ntBASIC1.82□□□□□ -2.12
PTPN4P29074 AC002553.4-201ENST00000616896 331 ntBASIC1.82□□□□□ -2.12
PTPN4P29074 AL450472.1-202ENST00000637286 180 ntBASIC1.82□□□□□ -2.12
PTPN4P29074 AC100810.6-201ENST00000638068 285 ntBASIC1.82□□□□□ -2.12
PTPN4P29074 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.82□□□□□ -2.12
PTPN4P29074 ZNF736P3Y-201ENST00000428264 1465 ntBASIC1.82□□□□□ -2.12
PTPN4P29074 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.81□□□□□ -2.12
PTPN4P29074 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
PTPN4P29074 RNU1-58P-201ENST00000362413 163 ntBASIC1.81□□□□□ -2.12
PTPN4P29074 RNU6-227P-201ENST00000362865 103 ntBASIC1.81□□□□□ -2.12
PTPN4P29074 RNU1-17P-201ENST00000363022 152 ntBASIC1.81□□□□□ -2.12
PTPN4P29074 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC1.81□□□□□ -2.12
PTPN4P29074 RNU6-160P-201ENST00000384591 107 ntBASIC1.81□□□□□ -2.12
PTPN4P29074 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC1.81□□□□□ -2.12
PTPN4P29074 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
PTPN4P29074 RNU6-325P-201ENST00000411132 105 ntBASIC1.81□□□□□ -2.12
PTPN4P29074 HMGB1P18-201ENST00000438801 619 ntBASIC1.81□□□□□ -2.12
PTPN4P29074 AC104564.1-201ENST00000493028 407 ntBASIC1.81□□□□□ -2.12
PTPN4P29074 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.81□□□□□ -2.12
PTPN4P29074 AC093259.1-201ENST00000509755 300 ntBASIC1.81□□□□□ -2.12
PTPN4P29074 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC1.81□□□□□ -2.12
PTPN4P29074 RNU6-965P-201ENST00000516721 96 ntBASIC1.81□□□□□ -2.12
PTPN4P29074 RNU6-256P-201ENST00000516747 97 ntBASIC1.81□□□□□ -2.12
PTPN4P29074 SNORA44.1-201ENST00000517031 108 ntBASIC1.81□□□□□ -2.12
PTPN4P29074 MTND4LP26-201ENST00000518144 282 ntBASIC1.81□□□□□ -2.12
PTPN4P29074 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.81□□□□□ -2.12
PTPN4P29074 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC1.81□□□□□ -2.12
PTPN4P29074 MIR4419B-201ENST00000577260 68 ntBASIC1.81□□□□□ -2.12
PTPN4P29074 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.81□□□□□ -2.12
PTPN4P29074 CPDP1-201ENST00000579660 283 ntBASIC1.81□□□□□ -2.12
PTPN4P29074 MIR3672-201ENST00000584290 82 ntBASIC1.81□□□□□ -2.12
PTPN4P29074 AC084782.3-201ENST00000612282 578 ntBASIC1.81□□□□□ -2.12
PTPN4P29074 AL138726.1-201ENST00000614873 333 ntBASIC1.81□□□□□ -2.12
PTPN4P29074 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC1.81□□□□□ -2.12
PTPN4P29074 AC006504.8-201ENST00000621046 635 ntBASIC1.81□□□□□ -2.12
PTPN4P29074 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC1.81□□□□□ -2.12
PTPN4P29074 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
PTPN4P29074 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC1.8□□□□□ -2.12
PTPN4P29074 Y_RNA.135-201ENST00000363439 95 ntBASIC1.8□□□□□ -2.12
PTPN4P29074 Y_RNA.504-201ENST00000384481 104 ntBASIC1.8□□□□□ -2.12
PTPN4P29074 RNU2-20P-201ENST00000410425 191 ntBASIC1.8□□□□□ -2.12
PTPN4P29074 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC1.8□□□□□ -2.12
PTPN4P29074 AC009161.1-201ENST00000417306 376 ntBASIC1.8□□□□□ -2.12
PTPN4P29074 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC1.8□□□□□ -2.12
PTPN4P29074 MTND3P9-201ENST00000429526 346 ntBASIC1.8□□□□□ -2.12
PTPN4P29074 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
PTPN4P29074 AC069439.1-201ENST00000494739 167 ntBASIC1.8□□□□□ -2.12
PTPN4P29074 MTCO1P29-201ENST00000496868 288 ntBASIC1.8□□□□□ -2.12
PTPN4P29074 RPL23AP63-201ENST00000498752 471 ntBASIC1.8□□□□□ -2.12
PTPN4P29074 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.8□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 191.7 ms