Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 RNU6-612P-201ENST00000516909 102 ntBASIC1□□□□□ -2.25
CPSF4O95639 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC1□□□□□ -2.25
CPSF4O95639 RNU6-323P-201ENST00000521915 107 ntBASIC1□□□□□ -2.25
CPSF4O95639 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC1□□□□□ -2.25
CPSF4O95639 AL118558.2-201ENST00000556294 238 ntBASIC1□□□□□ -2.25
CPSF4O95639 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC1□□□□□ -2.25
CPSF4O95639 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC1□□□□□ -2.25
CPSF4O95639 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC1□□□□□ -2.25
CPSF4O95639 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1□□□□□ -2.25
CPSF4O95639 MIR5094-201ENST00000578766 85 ntBASIC1□□□□□ -2.25
CPSF4O95639 AP001485.1-201ENST00000604799 199 ntBASIC1□□□□□ -2.25
CPSF4O95639 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1□□□□□ -2.25
CPSF4O95639 SNORD114-21-201ENST00000606412 72 ntBASIC1□□□□□ -2.25
CPSF4O95639 AC064836.2-201ENST00000609491 462 ntBASIC1□□□□□ -2.25
CPSF4O95639 MIR6078-201ENST00000611069 100 ntBASIC1□□□□□ -2.25
CPSF4O95639 AC005520.5-201ENST00000613926 164 ntBASIC1□□□□□ -2.25
CPSF4O95639 MTND5P9-201ENST00000503854 1755 ntBASIC1□□□□□ -2.25
CPSF4O95639 AC233981.2-201ENST00000611524 1614 ntBASIC1□□□□□ -2.25
CPSF4O95639 AC009541.1-201ENST00000438279 2662 ntBASIC1□□□□□ -2.25
CPSF4O95639 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC0.99□□□□□ -2.25
CPSF4O95639 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC0.99□□□□□ -2.25
CPSF4O95639 RNU1-76P-201ENST00000362903 159 ntBASIC0.99□□□□□ -2.25
CPSF4O95639 RNU6-112P-201ENST00000363599 104 ntBASIC0.99□□□□□ -2.25
CPSF4O95639 SNORD37.1-201ENST00000390968 65 ntBASIC0.99□□□□□ -2.25
CPSF4O95639 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC0.99□□□□□ -2.25
CPSF4O95639 AL663109.1-201ENST00000411498 844 ntBASIC0.99□□□□□ -2.25
CPSF4O95639 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC0.99□□□□□ -2.25
CPSF4O95639 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC0.99□□□□□ -2.25
CPSF4O95639 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC0.99□□□□□ -2.25
CPSF4O95639 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC0.99□□□□□ -2.25
CPSF4O95639 RPL31P3-201ENST00000458430 332 ntBASIC0.99□□□□□ -2.25
CPSF4O95639 snoU13.6-201ENST00000458785 104 ntBASIC0.99□□□□□ -2.25
CPSF4O95639 RNU6-1037P-201ENST00000459571 107 ntBASIC0.99□□□□□ -2.25
CPSF4O95639 RPS29P27-201ENST00000463711 170 ntBASIC0.99□□□□□ -2.25
CPSF4O95639 AC005908.1-201ENST00000468701 347 ntBASIC0.99□□□□□ -2.25
CPSF4O95639 AC114801.2-201ENST00000503825 781 ntBASIC0.99□□□□□ -2.25
CPSF4O95639 CENPUP1-201ENST00000526649 1202 ntBASIC0.99□□□□□ -2.25
CPSF4O95639 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC0.99□□□□□ -2.25
CPSF4O95639 CARD18-203ENST00000532895 422 ntTSL 2 BASIC0.99□□□□□ -2.25
CPSF4O95639 NTS-203ENST00000551529 801 ntTSL 3 BASIC0.99□□□□□ -2.25
CPSF4O95639 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC0.99□□□□□ -2.25
CPSF4O95639 AC090517.1-201ENST00000569307 266 ntBASIC0.99□□□□□ -2.25
CPSF4O95639 MIR4295-201ENST00000585286 85 ntBASIC0.99□□□□□ -2.25
CPSF4O95639 RN7SKP299-201ENST00000606679 301 ntBASIC0.99□□□□□ -2.25
CPSF4O95639 AC064807.4-201ENST00000607201 407 ntBASIC0.99□□□□□ -2.25
CPSF4O95639 AC017083.3-201ENST00000609955 700 ntBASIC0.99□□□□□ -2.25
CPSF4O95639 AC103705.1-201ENST00000619013 241 ntBASIC0.99□□□□□ -2.25
CPSF4O95639 AC139792.3-201ENST00000623525 224 ntBASIC0.99□□□□□ -2.25
CPSF4O95639 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC0.99□□□□□ -2.25
CPSF4O95639 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC0.99□□□□□ -2.25
CPSF4O95639 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC0.99□□□□□ -2.25
CPSF4O95639 MIR378A-201ENST00000362177 66 ntBASIC0.98□□□□□ -2.25
CPSF4O95639 RNU6-227P-201ENST00000362865 103 ntBASIC0.98□□□□□ -2.25
CPSF4O95639 Y_RNA.378-201ENST00000365652 113 ntBASIC0.98□□□□□ -2.25
CPSF4O95639 Y_RNA.409-201ENST00000383990 98 ntBASIC0.98□□□□□ -2.25
CPSF4O95639 RNU6-38P-201ENST00000384085 107 ntBASIC0.98□□□□□ -2.25
CPSF4O95639 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC0.98□□□□□ -2.25
CPSF4O95639 RNU6-1106P-201ENST00000390845 107 ntBASIC0.98□□□□□ -2.25
CPSF4O95639 RNU6-1093P-201ENST00000391194 107 ntBASIC0.98□□□□□ -2.25
CPSF4O95639 MTND3P9-201ENST00000429526 346 ntBASIC0.98□□□□□ -2.25
CPSF4O95639 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC0.98□□□□□ -2.25
CPSF4O95639 MTATP6P17-201ENST00000431030 672 ntBASIC0.98□□□□□ -2.25
CPSF4O95639 MTCO1P44-201ENST00000441935 243 ntBASIC0.98□□□□□ -2.25
CPSF4O95639 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC0.98□□□□□ -2.25
CPSF4O95639 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC0.98□□□□□ -2.25
CPSF4O95639 AC016925.1-201ENST00000458303 298 ntBASIC0.98□□□□□ -2.25
CPSF4O95639 AC010531.2-201ENST00000465012 153 ntBASIC0.98□□□□□ -2.25
CPSF4O95639 RPS23P5-201ENST00000495419 428 ntBASIC0.98□□□□□ -2.25
CPSF4O95639 AC025465.4-201ENST00000513422 638 ntBASIC0.98□□□□□ -2.25
CPSF4O95639 RNA5SP401-201ENST00000515920 127 ntBASIC0.98□□□□□ -2.25
CPSF4O95639 RNU6-1069P-201ENST00000516612 133 ntBASIC0.98□□□□□ -2.25
CPSF4O95639 AC104576.1-201ENST00000524225 88 ntBASIC0.98□□□□□ -2.25
CPSF4O95639 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC0.98□□□□□ -2.25
CPSF4O95639 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC0.98□□□□□ -2.25
CPSF4O95639 AC025423.5-201ENST00000550230 219 ntBASIC0.98□□□□□ -2.25
CPSF4O95639 AC092747.3-201ENST00000603769 301 ntBASIC0.98□□□□□ -2.25
CPSF4O95639 AP001330.5-201ENST00000607176 411 ntBASIC0.98□□□□□ -2.25
CPSF4O95639 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC0.98□□□□□ -2.25
CPSF4O95639 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC0.98□□□□□ -2.25
CPSF4O95639 AL136221.1-201ENST00000621449 509 ntBASIC0.98□□□□□ -2.25
CPSF4O95639 AC022079.1-201ENST00000621546 602 ntBASIC0.98□□□□□ -2.25
CPSF4O95639 AC068205.3-201ENST00000636385 468 ntBASIC0.98□□□□□ -2.25
CPSF4O95639 RNU6-82P-201ENST00000363970 107 ntBASIC0.97□□□□□ -2.25
CPSF4O95639 RNU4-20P-201ENST00000365601 151 ntBASIC0.97□□□□□ -2.25
CPSF4O95639 SNORA18.2-201ENST00000383865 132 ntBASIC0.97□□□□□ -2.25
CPSF4O95639 RNU6-1026P-201ENST00000384465 108 ntBASIC0.97□□□□□ -2.25
CPSF4O95639 RNU6-296P-201ENST00000384608 107 ntBASIC0.97□□□□□ -2.25
CPSF4O95639 AC004965.1-201ENST00000413033 213 ntBASIC0.97□□□□□ -2.25
CPSF4O95639 RPL21P111-201ENST00000418453 477 ntBASIC0.97□□□□□ -2.25
CPSF4O95639 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC0.97□□□□□ -2.25
CPSF4O95639 AC099677.2-201ENST00000436385 175 ntBASIC0.97□□□□□ -2.25
CPSF4O95639 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC0.97□□□□□ -2.25
CPSF4O95639 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC0.97□□□□□ -2.25
CPSF4O95639 TRAPPC2P3-201ENST00000443200 321 ntBASIC0.97□□□□□ -2.25
CPSF4O95639 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC0.97□□□□□ -2.25
CPSF4O95639 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC0.97□□□□□ -2.25
CPSF4O95639 RPL9P9-202ENST00000466501 579 ntBASIC0.97□□□□□ -2.25
CPSF4O95639 AC087343.1-201ENST00000477341 475 ntBASIC0.97□□□□□ -2.25
CPSF4O95639 SUMO2P18-201ENST00000518873 252 ntBASIC0.97□□□□□ -2.25
CPSF4O95639 AC087854.1-201ENST00000519706 414 ntBASIC0.97□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 128.6 ms