Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 AL136221.1-201ENST00000621449 509 ntBASIC0.23□□□□□ -2.37
HMGB3O15347 AL359740.1-201ENST00000624340 592 ntBASIC0.23□□□□□ -2.37
HMGB3O15347 U6.108-201ENST00000637764 58 ntBASIC0.23□□□□□ -2.37
HMGB3O15347 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC0.22□□□□□ -2.37
HMGB3O15347 RNU1-93P-201ENST00000364704 169 ntBASIC0.22□□□□□ -2.37
HMGB3O15347 RNU4-48P-201ENST00000365559 182 ntBASIC0.22□□□□□ -2.37
HMGB3O15347 MIR208B-201ENST00000401172 77 ntBASIC0.22□□□□□ -2.37
HMGB3O15347 RNU2-39P-201ENST00000410604 198 ntBASIC0.22□□□□□ -2.37
HMGB3O15347 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC0.22□□□□□ -2.37
HMGB3O15347 AC137499.1-201ENST00000427602 88 ntBASIC0.22□□□□□ -2.37
HMGB3O15347 U7.7-201ENST00000459276 60 ntBASIC0.22□□□□□ -2.37
HMGB3O15347 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC0.22□□□□□ -2.37
HMGB3O15347 WDR78-207ENST00000488333 613 ntTSL 3 BASIC0.22□□□□□ -2.37
HMGB3O15347 AC008628.2-201ENST00000502605 298 ntBASIC0.22□□□□□ -2.37
HMGB3O15347 DEFB131C-201ENST00000528817 165 ntBASIC0.22□□□□□ -2.37
HMGB3O15347 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC0.22□□□□□ -2.37
HMGB3O15347 AC023050.3-201ENST00000541142 333 ntBASIC0.22□□□□□ -2.37
HMGB3O15347 MIR4753-201ENST00000585119 83 ntBASIC0.22□□□□□ -2.37
HMGB3O15347 AL357312.1-201ENST00000603879 298 ntBASIC0.22□□□□□ -2.37
HMGB3O15347 AL031775.1-201ENST00000607014 887 ntBASIC0.22□□□□□ -2.37
HMGB3O15347 RNU4-1-201ENST00000363925 141 ntBASIC0.21□□□□□ -2.38
HMGB3O15347 RNA5SP323-201ENST00000391094 133 ntBASIC0.21□□□□□ -2.38
HMGB3O15347 AL355796.1-201ENST00000406706 323 ntBASIC0.21□□□□□ -2.38
HMGB3O15347 MIR1295A-201ENST00000408463 79 ntBASIC0.21□□□□□ -2.38
HMGB3O15347 MTATP6P20-201ENST00000414147 562 ntBASIC0.21□□□□□ -2.38
HMGB3O15347 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC0.21□□□□□ -2.38
HMGB3O15347 MED13P1-201ENST00000428342 171 ntBASIC0.21□□□□□ -2.38
HMGB3O15347 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC0.21□□□□□ -2.38
HMGB3O15347 AC016717.1-201ENST00000448918 286 ntBASIC0.21□□□□□ -2.38
HMGB3O15347 RPL39P39-201ENST00000455840 151 ntBASIC0.21□□□□□ -2.38
HMGB3O15347 MTCO2P29-201ENST00000465212 189 ntBASIC0.21□□□□□ -2.38
HMGB3O15347 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC0.21□□□□□ -2.38
HMGB3O15347 LRRC34P2-201ENST00000514850 553 ntBASIC0.21□□□□□ -2.38
HMGB3O15347 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC0.21□□□□□ -2.38
HMGB3O15347 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC0.21□□□□□ -2.38
HMGB3O15347 FAM106DP-201ENST00000586416 501 ntBASIC0.21□□□□□ -2.38
HMGB3O15347 AC017083.3-201ENST00000609955 700 ntBASIC0.21□□□□□ -2.38
HMGB3O15347 AC073349.3-201ENST00000617616 186 ntBASIC0.21□□□□□ -2.38
HMGB3O15347 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC0.21□□□□□ -2.38
HMGB3O15347 MPP6-209ENST00000625307 126 ntTSL 5 BASIC0.21□□□□□ -2.38
HMGB3O15347 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC0.2□□□□□ -2.38
HMGB3O15347 RNU6-348P-201ENST00000384386 107 ntBASIC0.2□□□□□ -2.38
HMGB3O15347 RNU6-45P-201ENST00000384471 107 ntBASIC0.2□□□□□ -2.38
HMGB3O15347 MIR558-201ENST00000384920 94 ntBASIC0.2□□□□□ -2.38
HMGB3O15347 RNU6-440P-201ENST00000390882 105 ntBASIC0.2□□□□□ -2.38
HMGB3O15347 RNU6-387P-201ENST00000411331 105 ntBASIC0.2□□□□□ -2.38
HMGB3O15347 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.2□□□□□ -2.38
HMGB3O15347 AL031313.1-201ENST00000448435 256 ntBASIC0.2□□□□□ -2.38
HMGB3O15347 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC0.2□□□□□ -2.38
HMGB3O15347 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC0.2□□□□□ -2.38
HMGB3O15347 AC022364.2-201ENST00000457963 554 ntBASIC0.2□□□□□ -2.38
HMGB3O15347 AK3P2-201ENST00000507976 429 ntBASIC0.2□□□□□ -2.38
HMGB3O15347 SNORA19.3-201ENST00000516165 130 ntBASIC0.2□□□□□ -2.38
HMGB3O15347 RNA5SP458-201ENST00000516188 119 ntBASIC0.2□□□□□ -2.38
HMGB3O15347 RNU6-1069P-201ENST00000516612 133 ntBASIC0.2□□□□□ -2.38
HMGB3O15347 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC0.2□□□□□ -2.38
HMGB3O15347 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC0.2□□□□□ -2.38
HMGB3O15347 AL391840.1-201ENST00000571144 367 ntBASIC0.2□□□□□ -2.38
HMGB3O15347 MIR4524B-201ENST00000581569 115 ntBASIC0.2□□□□□ -2.38
HMGB3O15347 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC0.2□□□□□ -2.38
HMGB3O15347 MTND3P19-201ENST00000603825 345 ntBASIC0.2□□□□□ -2.38
HMGB3O15347 AC243829.6-201ENST00000612652 106 ntBASIC0.2□□□□□ -2.38
HMGB3O15347 AC068787.1-201ENST00000623908 691 ntBASIC0.2□□□□□ -2.38
HMGB3O15347 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC0.2□□□□□ -2.38
HMGB3O15347 AC134980.1-208ENST00000640228 535 ntTSL 5 BASIC0.2□□□□□ -2.38
HMGB3O15347 OR4G1P-203ENST00000641984 1631 ntBASIC0.2□□□□□ -2.38
HMGB3O15347 AC090625.1-201ENST00000357130 210 ntBASIC0.19□□□□□ -2.38
HMGB3O15347 RNU6-199P-201ENST00000362954 107 ntBASIC0.19□□□□□ -2.38
HMGB3O15347 Y_RNA.110-201ENST00000363220 99 ntBASIC0.19□□□□□ -2.38
HMGB3O15347 SNORD89-201ENST00000390981 114 ntBASIC0.19□□□□□ -2.38
HMGB3O15347 AL451046.2-201ENST00000403074 277 ntBASIC0.19□□□□□ -2.38
HMGB3O15347 MTCYBP36-201ENST00000404146 440 ntBASIC0.19□□□□□ -2.38
HMGB3O15347 AL034345.1-201ENST00000407768 123 ntBASIC0.19□□□□□ -2.38
HMGB3O15347 AC012306.1-201ENST00000423267 114 ntBASIC0.19□□□□□ -2.38
HMGB3O15347 EEF1A1P39-201ENST00000440791 250 ntBASIC0.19□□□□□ -2.38
HMGB3O15347 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC0.19□□□□□ -2.38
HMGB3O15347 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC0.19□□□□□ -2.38
HMGB3O15347 AC104136.1-201ENST00000512969 394 ntBASIC0.19□□□□□ -2.38
HMGB3O15347 AC106038.2-201ENST00000520706 568 ntBASIC0.19□□□□□ -2.38
HMGB3O15347 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC0.19□□□□□ -2.38
HMGB3O15347 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC0.19□□□□□ -2.38
HMGB3O15347 AC080013.3-201ENST00000606839 578 ntBASIC0.19□□□□□ -2.38
HMGB3O15347 AC008250.2-201ENST00000615261 205 ntBASIC0.19□□□□□ -2.38
HMGB3O15347 AL359697.1-201ENST00000624879 587 ntBASIC0.19□□□□□ -2.38
HMGB3O15347 SNORA43.4-201ENST00000629559 138 ntBASIC0.19□□□□□ -2.38
HMGB3O15347 Y_RNA.97-201ENST00000363094 102 ntBASIC0.18□□□□□ -2.38
HMGB3O15347 SNORA36A-201ENST00000384221 132 ntBASIC0.18□□□□□ -2.38
HMGB3O15347 SNORD115.1-201ENST00000391109 76 ntBASIC0.18□□□□□ -2.38
HMGB3O15347 AP000275.1-201ENST00000411943 390 ntBASIC0.18□□□□□ -2.38
HMGB3O15347 AC090960.1-201ENST00000421072 306 ntBASIC0.18□□□□□ -2.38
HMGB3O15347 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC0.18□□□□□ -2.38
HMGB3O15347 RPL22P17-201ENST00000438729 315 ntBASIC0.18□□□□□ -2.38
HMGB3O15347 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC0.18□□□□□ -2.38
HMGB3O15347 AC245047.8-201ENST00000456455 284 ntBASIC0.18□□□□□ -2.38
HMGB3O15347 AC010486.2-201ENST00000505572 483 ntBASIC0.18□□□□□ -2.38
HMGB3O15347 AC022493.2-201ENST00000506122 481 ntBASIC0.18□□□□□ -2.38
HMGB3O15347 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC0.18□□□□□ -2.38
HMGB3O15347 AC091874.1-201ENST00000511402 339 ntBASIC0.18□□□□□ -2.38
HMGB3O15347 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC0.18□□□□□ -2.38
HMGB3O15347 SNORA68.3-201ENST00000515906 83 ntBASIC0.18□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms