Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 AC010154.1-201ENST00000425857 269 ntBASIC0.53□□□□□ -2.32
SDCBPO00560 AL356583.2-201ENST00000426536 280 ntBASIC0.53□□□□□ -2.32
SDCBPO00560 RAB28P5-201ENST00000427490 651 ntBASIC0.53□□□□□ -2.32
SDCBPO00560 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC0.53□□□□□ -2.32
SDCBPO00560 HMGN2P34-201ENST00000437647 269 ntBASIC0.53□□□□□ -2.32
SDCBPO00560 AL512286.1-201ENST00000439244 400 ntBASIC0.53□□□□□ -2.32
SDCBPO00560 AC092991.1-201ENST00000477176 376 ntBASIC0.53□□□□□ -2.32
SDCBPO00560 AC048334.1-201ENST00000477975 159 ntBASIC0.53□□□□□ -2.32
SDCBPO00560 HMGN1P12-201ENST00000499125 195 ntBASIC0.53□□□□□ -2.32
SDCBPO00560 NAF1-205ENST00000509434 385 ntTSL 3 BASIC0.53□□□□□ -2.32
SDCBPO00560 MTCO3P7-201ENST00000510008 774 ntBASIC0.53□□□□□ -2.32
SDCBPO00560 SNORA31.2-201ENST00000516019 134 ntBASIC0.53□□□□□ -2.32
SDCBPO00560 Y_RNA.672-201ENST00000516289 104 ntBASIC0.53□□□□□ -2.32
SDCBPO00560 SNORA31.10-201ENST00000516482 106 ntBASIC0.53□□□□□ -2.32
SDCBPO00560 RNA5SP168-201ENST00000516642 112 ntBASIC0.53□□□□□ -2.32
SDCBPO00560 AC109479.2-201ENST00000517842 174 ntBASIC0.53□□□□□ -2.32
SDCBPO00560 IL7-206ENST00000520269 456 ntTSL 3 BASIC0.53□□□□□ -2.32
SDCBPO00560 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC0.53□□□□□ -2.32
SDCBPO00560 PCMTD1P2-201ENST00000565017 355 ntBASIC0.53□□□□□ -2.32
SDCBPO00560 AC018767.1-201ENST00000566236 405 ntTSL 3 BASIC0.53□□□□□ -2.32
SDCBPO00560 TMF1P1-201ENST00000576058 373 ntBASIC0.53□□□□□ -2.32
SDCBPO00560 Z99289.3-201ENST00000605586 594 ntBASIC0.53□□□□□ -2.32
SDCBPO00560 TEX41-243ENST00000614173 190 ntTSL 5 BASIC0.53□□□□□ -2.32
SDCBPO00560 MESTIT1_1.1-201ENST00000618871 140 ntBASIC0.53□□□□□ -2.32
SDCBPO00560 AC138649.3-201ENST00000622154 254 ntBASIC0.53□□□□□ -2.32
SDCBPO00560 AC007671.2-201ENST00000637344 619 ntBASIC0.53□□□□□ -2.32
SDCBPO00560 Y_RNA.124-201ENST00000363339 93 ntBASIC0.52□□□□□ -2.33
SDCBPO00560 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC0.52□□□□□ -2.33
SDCBPO00560 TAF9P1-201ENST00000445421 515 ntBASIC0.52□□□□□ -2.33
SDCBPO00560 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC0.52□□□□□ -2.33
SDCBPO00560 TAF9P2-201ENST00000454958 515 ntBASIC0.52□□□□□ -2.33
SDCBPO00560 RPL39P38-201ENST00000467018 153 ntBASIC0.52□□□□□ -2.33
SDCBPO00560 AC008628.2-201ENST00000502605 298 ntBASIC0.52□□□□□ -2.33
SDCBPO00560 UBE2V1P12-201ENST00000503954 474 ntBASIC0.52□□□□□ -2.33
SDCBPO00560 AC016632.1-201ENST00000503994 196 ntBASIC0.52□□□□□ -2.33
SDCBPO00560 RNU2-46P-201ENST00000517038 113 ntBASIC0.52□□□□□ -2.33
SDCBPO00560 SNORA25.17-201ENST00000517184 124 ntBASIC0.52□□□□□ -2.33
SDCBPO00560 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC0.52□□□□□ -2.33
SDCBPO00560 AP003484.1-201ENST00000530974 250 ntBASIC0.52□□□□□ -2.33
SDCBPO00560 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC0.52□□□□□ -2.33
SDCBPO00560 AC112191.3-201ENST00000604371 277 ntBASIC0.52□□□□□ -2.33
SDCBPO00560 AP001836.1-201ENST00000604675 523 ntBASIC0.52□□□□□ -2.33
SDCBPO00560 AC008250.2-201ENST00000615261 205 ntBASIC0.52□□□□□ -2.33
SDCBPO00560 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC0.52□□□□□ -2.33
SDCBPO00560 AC010608.3-201ENST00000625048 527 ntBASIC0.52□□□□□ -2.33
SDCBPO00560 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC0.52□□□□□ -2.33
SDCBPO00560 RNU4-79P-201ENST00000362764 141 ntBASIC0.51□□□□□ -2.33
SDCBPO00560 snoU2-30.2-201ENST00000362805 70 ntBASIC0.51□□□□□ -2.33
SDCBPO00560 Y_RNA.287-201ENST00000364853 94 ntBASIC0.51□□□□□ -2.33
SDCBPO00560 SNORD114-22-201ENST00000365423 72 ntBASIC0.51□□□□□ -2.33
SDCBPO00560 MIR608-201ENST00000384820 100 ntBASIC0.51□□□□□ -2.33
SDCBPO00560 MIR520E-201ENST00000384867 87 ntBASIC0.51□□□□□ -2.33
SDCBPO00560 MIR513B-201ENST00000385136 84 ntBASIC0.51□□□□□ -2.33
SDCBPO00560 MIR92A1-201ENST00000385233 78 ntBASIC0.51□□□□□ -2.33
SDCBPO00560 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC0.51□□□□□ -2.33
SDCBPO00560 RNA5SP467-201ENST00000391274 118 ntBASIC0.51□□□□□ -2.33
SDCBPO00560 MIR1283-1-201ENST00000408494 87 ntBASIC0.51□□□□□ -2.33
SDCBPO00560 MIR1276-201ENST00000408707 83 ntBASIC0.51□□□□□ -2.33
SDCBPO00560 RNU2-64P-201ENST00000411315 191 ntBASIC0.51□□□□□ -2.33
SDCBPO00560 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC0.51□□□□□ -2.33
SDCBPO00560 TIMM9P3-201ENST00000428659 274 ntBASIC0.51□□□□□ -2.33
SDCBPO00560 AC002429.1-201ENST00000437672 148 ntBASIC0.51□□□□□ -2.33
SDCBPO00560 AC073614.1-201ENST00000438690 650 ntBASIC0.51□□□□□ -2.33
SDCBPO00560 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC0.51□□□□□ -2.33
SDCBPO00560 AL031274.1-201ENST00000450334 232 ntBASIC0.51□□□□□ -2.33
SDCBPO00560 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC0.51□□□□□ -2.33
SDCBPO00560 AC136628.3-201ENST00000521868 290 ntBASIC0.51□□□□□ -2.33
SDCBPO00560 AC004812.1-201ENST00000540773 146 ntBASIC0.51□□□□□ -2.33
SDCBPO00560 AC011604.1-201ENST00000545978 196 ntBASIC0.51□□□□□ -2.33
SDCBPO00560 CYP3A137P-201ENST00000562436 69 ntBASIC0.51□□□□□ -2.33
SDCBPO00560 AL356157.2-201ENST00000605122 111 ntBASIC0.51□□□□□ -2.33
SDCBPO00560 AC002044.1-201ENST00000606707 158 ntBASIC0.51□□□□□ -2.33
SDCBPO00560 AC104458.1-201ENST00000608243 463 ntBASIC0.51□□□□□ -2.33
SDCBPO00560 MTND5P17-201ENST00000418405 1603 ntBASIC0.5□□□□□ -2.33
SDCBPO00560 RNU6-500P-201ENST00000362349 107 ntBASIC0.5□□□□□ -2.33
SDCBPO00560 RNU6-1287P-201ENST00000362914 107 ntBASIC0.5□□□□□ -2.33
SDCBPO00560 RNU5E-5P-201ENST00000365379 116 ntBASIC0.5□□□□□ -2.33
SDCBPO00560 RNU6-1060P-201ENST00000384664 107 ntBASIC0.5□□□□□ -2.33
SDCBPO00560 RNU6-417P-201ENST00000384712 107 ntBASIC0.5□□□□□ -2.33
SDCBPO00560 SNORA16.2-201ENST00000390991 127 ntBASIC0.5□□□□□ -2.33
SDCBPO00560 AC004866.1-201ENST00000411748 78 ntBASIC0.5□□□□□ -2.33
SDCBPO00560 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC0.5□□□□□ -2.33
SDCBPO00560 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC0.5□□□□□ -2.33
SDCBPO00560 AC012306.1-201ENST00000423267 114 ntBASIC0.5□□□□□ -2.33
SDCBPO00560 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC0.5□□□□□ -2.33
SDCBPO00560 AC002486.1-201ENST00000435098 391 ntBASIC0.5□□□□□ -2.33
SDCBPO00560 USP9YP12-201ENST00000450481 570 ntBASIC0.5□□□□□ -2.33
SDCBPO00560 snoU13.6-201ENST00000458785 104 ntBASIC0.5□□□□□ -2.33
SDCBPO00560 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC0.5□□□□□ -2.33
SDCBPO00560 PDCD5P2-201ENST00000507570 312 ntBASIC0.5□□□□□ -2.33
SDCBPO00560 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC0.5□□□□□ -2.33
SDCBPO00560 AK3P2-201ENST00000507976 429 ntBASIC0.5□□□□□ -2.33
SDCBPO00560 RNU6-322P-201ENST00000516010 103 ntBASIC0.5□□□□□ -2.33
SDCBPO00560 RNU6-1069P-201ENST00000516612 133 ntBASIC0.5□□□□□ -2.33
SDCBPO00560 AC022878.1-201ENST00000530684 149 ntBASIC0.5□□□□□ -2.33
SDCBPO00560 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC0.5□□□□□ -2.33
SDCBPO00560 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC0.5□□□□□ -2.33
SDCBPO00560 MIR4775-201ENST00000581168 75 ntBASIC0.5□□□□□ -2.33
SDCBPO00560 MTCO2P2-201ENST00000591258 225 ntBASIC0.5□□□□□ -2.33
SDCBPO00560 AC022432.1-201ENST00000595739 310 ntBASIC0.5□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 108.8 ms