Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
CHMP3Q9Y3E7 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
CHMP3Q9Y3E7 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
CHMP3Q9Y3E7 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC4.37□□□□□ -1.71
CHMP3Q9Y3E7 RNU5F-3P-201ENST00000363767 117 ntBASIC4.37□□□□□ -1.71
CHMP3Q9Y3E7 Y_RNA.182-201ENST00000363880 111 ntBASIC4.37□□□□□ -1.71
CHMP3Q9Y3E7 RNU6-449P-201ENST00000383914 107 ntBASIC4.37□□□□□ -1.71
CHMP3Q9Y3E7 Y_RNA.568-201ENST00000384742 113 ntBASIC4.37□□□□□ -1.71
CHMP3Q9Y3E7 RNU6-735P-201ENST00000410612 107 ntBASIC4.37□□□□□ -1.71
CHMP3Q9Y3E7 AL162725.1-201ENST00000435405 301 ntBASIC4.37□□□□□ -1.71
CHMP3Q9Y3E7 AC006445.2-201ENST00000510061 472 ntBASIC4.37□□□□□ -1.71
CHMP3Q9Y3E7 CYCSP23-201ENST00000519781 313 ntBASIC4.37□□□□□ -1.71
CHMP3Q9Y3E7 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC4.37□□□□□ -1.71
CHMP3Q9Y3E7 AL161756.2-201ENST00000604597 246 ntBASIC4.37□□□□□ -1.71
CHMP3Q9Y3E7 AC091895.1-201ENST00000624494 256 ntBASIC4.37□□□□□ -1.71
CHMP3Q9Y3E7 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
CHMP3Q9Y3E7 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
CHMP3Q9Y3E7 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
CHMP3Q9Y3E7 Y_RNA.400-201ENST00000383963 111 ntBASIC4.36□□□□□ -1.71
CHMP3Q9Y3E7 Y_RNA.415-201ENST00000384012 112 ntBASIC4.36□□□□□ -1.71
CHMP3Q9Y3E7 Y_RNA.488-201ENST00000384403 102 ntBASIC4.36□□□□□ -1.71
CHMP3Q9Y3E7 U3.26-201ENST00000391236 204 ntBASIC4.36□□□□□ -1.71
CHMP3Q9Y3E7 AC096649.2-201ENST00000416186 393 ntBASIC4.36□□□□□ -1.71
CHMP3Q9Y3E7 AC017083.1-201ENST00000428093 483 ntBASIC4.36□□□□□ -1.71
CHMP3Q9Y3E7 U8.19-201ENST00000459095 133 ntBASIC4.36□□□□□ -1.71
CHMP3Q9Y3E7 AL049830.2-201ENST00000480072 201 ntBASIC4.36□□□□□ -1.71
CHMP3Q9Y3E7 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC4.36□□□□□ -1.71
CHMP3Q9Y3E7 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC4.36□□□□□ -1.71
CHMP3Q9Y3E7 SNORD116-25-201ENST00000516517 92 ntBASIC4.36□□□□□ -1.71
CHMP3Q9Y3E7 AC011602.1-201ENST00000546484 331 ntBASIC4.36□□□□□ -1.71
CHMP3Q9Y3E7 CYP4A27P-201ENST00000567218 190 ntBASIC4.36□□□□□ -1.71
CHMP3Q9Y3E7 AC073308.1-201ENST00000623696 305 ntBASIC4.36□□□□□ -1.71
CHMP3Q9Y3E7 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
CHMP3Q9Y3E7 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC4.36□□□□□ -1.71
CHMP3Q9Y3E7 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC4.36□□□□□ -1.71
CHMP3Q9Y3E7 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
CHMP3Q9Y3E7 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC4.35□□□□□ -1.71
CHMP3Q9Y3E7 AC068700.1-201ENST00000565862 3754 ntBASIC4.35□□□□□ -1.71
CHMP3Q9Y3E7 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC4.35□□□□□ -1.71
CHMP3Q9Y3E7 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
CHMP3Q9Y3E7 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
CHMP3Q9Y3E7 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
CHMP3Q9Y3E7 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC4.35□□□□□ -1.71
CHMP3Q9Y3E7 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
CHMP3Q9Y3E7 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC4.35□□□□□ -1.71
CHMP3Q9Y3E7 RNU6-454P-201ENST00000364292 107 ntBASIC4.35□□□□□ -1.71
CHMP3Q9Y3E7 SNORD50B-201ENST00000364995 70 ntBASIC4.35□□□□□ -1.71
CHMP3Q9Y3E7 Y_RNA.343-201ENST00000365354 112 ntBASIC4.35□□□□□ -1.71
CHMP3Q9Y3E7 RNU6-487P-201ENST00000365430 104 ntBASIC4.35□□□□□ -1.71
CHMP3Q9Y3E7 RNU4-17P-201ENST00000365598 141 ntBASIC4.35□□□□□ -1.71
CHMP3Q9Y3E7 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC4.35□□□□□ -1.71
CHMP3Q9Y3E7 RNU6-245P-201ENST00000384020 107 ntBASIC4.35□□□□□ -1.71
CHMP3Q9Y3E7 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
CHMP3Q9Y3E7 RNU6-763P-201ENST00000390865 106 ntBASIC4.35□□□□□ -1.71
CHMP3Q9Y3E7 RNU6ATAC19P-201ENST00000408096 110 ntBASIC4.35□□□□□ -1.71
CHMP3Q9Y3E7 AL135790.2-201ENST00000437701 267 ntBASIC4.35□□□□□ -1.71
CHMP3Q9Y3E7 RBMY2UP-201ENST00000453474 324 ntBASIC4.35□□□□□ -1.71
CHMP3Q9Y3E7 RNA5SP310-201ENST00000459084 116 ntBASIC4.35□□□□□ -1.71
CHMP3Q9Y3E7 RPS27AP9-201ENST00000477681 438 ntBASIC4.35□□□□□ -1.71
CHMP3Q9Y3E7 RPS4XP13-201ENST00000483219 789 ntBASIC4.35□□□□□ -1.71
CHMP3Q9Y3E7 RNU5F-2P-201ENST00000516066 82 ntBASIC4.35□□□□□ -1.71
CHMP3Q9Y3E7 RNU6-426P-201ENST00000516464 97 ntBASIC4.35□□□□□ -1.71
CHMP3Q9Y3E7 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC4.35□□□□□ -1.71
CHMP3Q9Y3E7 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC4.35□□□□□ -1.71
CHMP3Q9Y3E7 MIR8058-201ENST00000615737 89 ntBASIC4.35□□□□□ -1.71
CHMP3Q9Y3E7 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC4.35□□□□□ -1.71
CHMP3Q9Y3E7 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC4.34□□□□□ -1.71
CHMP3Q9Y3E7 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
CHMP3Q9Y3E7 CUL1P1-201ENST00000509510 2425 ntBASIC4.34□□□□□ -1.71
CHMP3Q9Y3E7 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC4.34□□□□□ -1.71
CHMP3Q9Y3E7 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
CHMP3Q9Y3E7 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC4.34□□□□□ -1.71
CHMP3Q9Y3E7 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
CHMP3Q9Y3E7 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC4.34□□□□□ -1.71
CHMP3Q9Y3E7 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
CHMP3Q9Y3E7 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC4.34□□□□□ -1.71
CHMP3Q9Y3E7 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC4.34□□□□□ -1.71
CHMP3Q9Y3E7 RNU6-324P-201ENST00000363957 106 ntBASIC4.34□□□□□ -1.71
CHMP3Q9Y3E7 RNU4-84P-201ENST00000364200 139 ntBASIC4.34□□□□□ -1.71
CHMP3Q9Y3E7 Y_RNA.215-201ENST00000364204 112 ntBASIC4.34□□□□□ -1.71
CHMP3Q9Y3E7 PTMAP5-201ENST00000393073 333 ntBASIC4.34□□□□□ -1.71
CHMP3Q9Y3E7 CBX3P9-201ENST00000402326 552 ntBASIC4.34□□□□□ -1.71
CHMP3Q9Y3E7 RNA5SP475-201ENST00000410568 110 ntBASIC4.34□□□□□ -1.71
CHMP3Q9Y3E7 TRAPPC2P4-201ENST00000421750 331 ntBASIC4.34□□□□□ -1.71
CHMP3Q9Y3E7 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC4.34□□□□□ -1.71
CHMP3Q9Y3E7 AL161651.1-201ENST00000440882 223 ntBASIC4.34□□□□□ -1.71
CHMP3Q9Y3E7 HMGN2P16-201ENST00000456802 261 ntBASIC4.34□□□□□ -1.71
CHMP3Q9Y3E7 AC084357.1-201ENST00000473404 255 ntBASIC4.34□□□□□ -1.71
CHMP3Q9Y3E7 AIG1P1-201ENST00000503376 148 ntBASIC4.34□□□□□ -1.71
CHMP3Q9Y3E7 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC4.34□□□□□ -1.71
CHMP3Q9Y3E7 RNU6-436P-201ENST00000516171 114 ntBASIC4.34□□□□□ -1.71
CHMP3Q9Y3E7 RNU2-12P-201ENST00000517216 168 ntBASIC4.34□□□□□ -1.71
CHMP3Q9Y3E7 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC4.34□□□□□ -1.71
CHMP3Q9Y3E7 AL162713.1-201ENST00000604480 262 ntBASIC4.34□□□□□ -1.71
CHMP3Q9Y3E7 AC091953.5-201ENST00000622919 233 ntBASIC4.34□□□□□ -1.71
CHMP3Q9Y3E7 CEP170P1-201ENST00000502249 4587 ntBASIC4.34□□□□□ -1.71
CHMP3Q9Y3E7 AC100821.1-201ENST00000523153 2479 ntBASIC4.33□□□□□ -1.72
CHMP3Q9Y3E7 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CHMP3Q9Y3E7 Y_RNA.75-201ENST00000362927 97 ntBASIC4.33□□□□□ -1.72
CHMP3Q9Y3E7 RNU1-33P-201ENST00000364249 162 ntBASIC4.33□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 110.8 ms