Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 Y_RNA.3-201ENST00000362331 103 ntBASIC1.86□□□□□ -2.11
VPS54Q9P1Q0 RNU6-1164P-201ENST00000364428 107 ntBASIC1.86□□□□□ -2.11
VPS54Q9P1Q0 RNA5SP363-201ENST00000365072 115 ntBASIC1.86□□□□□ -2.11
VPS54Q9P1Q0 RNU6-26P-201ENST00000383985 107 ntBASIC1.86□□□□□ -2.11
VPS54Q9P1Q0 RNA5SP201-201ENST00000410316 124 ntBASIC1.86□□□□□ -2.11
VPS54Q9P1Q0 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC1.86□□□□□ -2.11
VPS54Q9P1Q0 HMGN2P18-201ENST00000450680 270 ntBASIC1.86□□□□□ -2.11
VPS54Q9P1Q0 RPS29P27-201ENST00000463711 170 ntBASIC1.86□□□□□ -2.11
VPS54Q9P1Q0 RNU6-720P-201ENST00000516363 108 ntBASIC1.86□□□□□ -2.11
VPS54Q9P1Q0 RNU6-548P-201ENST00000517083 115 ntBASIC1.86□□□□□ -2.11
VPS54Q9P1Q0 CTHRC1P1-201ENST00000605383 469 ntBASIC1.86□□□□□ -2.11
VPS54Q9P1Q0 AP000654.2-201ENST00000605633 586 ntBASIC1.86□□□□□ -2.11
VPS54Q9P1Q0 AC104458.1-201ENST00000608243 463 ntBASIC1.86□□□□□ -2.11
VPS54Q9P1Q0 AL773524.1-201ENST00000614065 229 ntBASIC1.86□□□□□ -2.11
VPS54Q9P1Q0 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC1.86□□□□□ -2.11
VPS54Q9P1Q0 AC006026.1-201ENST00000444025 1803 ntBASIC1.86□□□□□ -2.11
VPS54Q9P1Q0 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.86□□□□□ -2.11
VPS54Q9P1Q0 RNU6-227P-201ENST00000362865 103 ntBASIC1.85□□□□□ -2.11
VPS54Q9P1Q0 RNU6-451P-201ENST00000362921 107 ntBASIC1.85□□□□□ -2.11
VPS54Q9P1Q0 RNU6-1252P-201ENST00000363054 104 ntBASIC1.85□□□□□ -2.11
VPS54Q9P1Q0 RNU6-214P-201ENST00000384130 107 ntBASIC1.85□□□□□ -2.11
VPS54Q9P1Q0 SNORD116-4-201ENST00000384733 96 ntBASIC1.85□□□□□ -2.11
VPS54Q9P1Q0 RNU6-332P-201ENST00000391193 108 ntBASIC1.85□□□□□ -2.11
VPS54Q9P1Q0 AL158823.1-201ENST00000418441 478 ntBASIC1.85□□□□□ -2.11
VPS54Q9P1Q0 MTND3P21-201ENST00000433774 331 ntBASIC1.85□□□□□ -2.11
VPS54Q9P1Q0 AC021146.2-201ENST00000504736 556 ntBASIC1.85□□□□□ -2.11
VPS54Q9P1Q0 KRTAP13-6P-201ENST00000508999 371 ntBASIC1.85□□□□□ -2.11
VPS54Q9P1Q0 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC1.85□□□□□ -2.11
VPS54Q9P1Q0 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC1.85□□□□□ -2.11
VPS54Q9P1Q0 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC1.85□□□□□ -2.11
VPS54Q9P1Q0 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC1.85□□□□□ -2.11
VPS54Q9P1Q0 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.84□□□□□ -2.11
VPS54Q9P1Q0 RNU6-254P-201ENST00000363377 107 ntBASIC1.84□□□□□ -2.11
VPS54Q9P1Q0 RNY3P3-201ENST00000363816 102 ntBASIC1.84□□□□□ -2.11
VPS54Q9P1Q0 U3.9-201ENST00000363823 204 ntBASIC1.84□□□□□ -2.11
VPS54Q9P1Q0 MIR597-201ENST00000384968 97 ntBASIC1.84□□□□□ -2.11
VPS54Q9P1Q0 RNU2-41P-201ENST00000410991 178 ntBASIC1.84□□□□□ -2.11
VPS54Q9P1Q0 RPL31P63-201ENST00000422565 375 ntBASIC1.84□□□□□ -2.11
VPS54Q9P1Q0 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC1.84□□□□□ -2.11
VPS54Q9P1Q0 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC1.84□□□□□ -2.11
VPS54Q9P1Q0 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC1.84□□□□□ -2.11
VPS54Q9P1Q0 Y_RNA.665-201ENST00000516177 98 ntBASIC1.84□□□□□ -2.11
VPS54Q9P1Q0 MTND1P35-201ENST00000526739 508 ntBASIC1.84□□□□□ -2.11
VPS54Q9P1Q0 SCOCP1-201ENST00000554676 349 ntBASIC1.84□□□□□ -2.11
VPS54Q9P1Q0 AC021231.3-201ENST00000558497 370 ntBASIC1.84□□□□□ -2.11
VPS54Q9P1Q0 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.84□□□□□ -2.11
VPS54Q9P1Q0 AL022345.1-201ENST00000607292 135 ntBASIC1.84□□□□□ -2.11
VPS54Q9P1Q0 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.84□□□□□ -2.11
VPS54Q9P1Q0 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC1.84□□□□□ -2.11
VPS54Q9P1Q0 AC024614.3-201ENST00000637860 256 ntBASIC1.84□□□□□ -2.11
VPS54Q9P1Q0 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC1.84□□□□□ -2.12
VPS54Q9P1Q0 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC1.84□□□□□ -2.12
VPS54Q9P1Q0 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
VPS54Q9P1Q0 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.83□□□□□ -2.12
VPS54Q9P1Q0 ANKRD20A9P-201ENST00000457997 2978 ntBASIC1.83□□□□□ -2.12
VPS54Q9P1Q0 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.83□□□□□ -2.12
VPS54Q9P1Q0 RNU1-58P-201ENST00000362413 163 ntBASIC1.83□□□□□ -2.12
VPS54Q9P1Q0 Y_RNA.256-201ENST00000364594 104 ntBASIC1.83□□□□□ -2.12
VPS54Q9P1Q0 RNU6-234P-201ENST00000365229 104 ntBASIC1.83□□□□□ -2.12
VPS54Q9P1Q0 Y_RNA.516-201ENST00000384541 124 ntBASIC1.83□□□□□ -2.12
VPS54Q9P1Q0 MIR181A1-201ENST00000385026 110 ntBASIC1.83□□□□□ -2.12
VPS54Q9P1Q0 RNA5SP465-201ENST00000391195 109 ntBASIC1.83□□□□□ -2.12
VPS54Q9P1Q0 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC1.83□□□□□ -2.12
VPS54Q9P1Q0 RNU6-325P-201ENST00000411132 105 ntBASIC1.83□□□□□ -2.12
VPS54Q9P1Q0 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.83□□□□□ -2.12
VPS54Q9P1Q0 AC012306.1-201ENST00000423267 114 ntBASIC1.83□□□□□ -2.12
VPS54Q9P1Q0 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC1.83□□□□□ -2.12
VPS54Q9P1Q0 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC1.83□□□□□ -2.12
VPS54Q9P1Q0 snoU13.6-201ENST00000458785 104 ntBASIC1.83□□□□□ -2.12
VPS54Q9P1Q0 RNA5SP490-201ENST00000517141 136 ntBASIC1.83□□□□□ -2.12
VPS54Q9P1Q0 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC1.83□□□□□ -2.12
VPS54Q9P1Q0 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.83□□□□□ -2.12
VPS54Q9P1Q0 EIF4A1P12-201ENST00000551910 141 ntBASIC1.83□□□□□ -2.12
VPS54Q9P1Q0 ZNF519P2-201ENST00000557032 169 ntBASIC1.83□□□□□ -2.12
VPS54Q9P1Q0 CYP4A27P-201ENST00000567218 190 ntBASIC1.83□□□□□ -2.12
VPS54Q9P1Q0 EIF1P4-201ENST00000572664 335 ntBASIC1.83□□□□□ -2.12
VPS54Q9P1Q0 MIR3122-201ENST00000577243 73 ntBASIC1.83□□□□□ -2.12
VPS54Q9P1Q0 RNU1-17P-201ENST00000363022 152 ntBASIC1.82□□□□□ -2.12
VPS54Q9P1Q0 Y_RNA.123-201ENST00000363338 102 ntBASIC1.82□□□□□ -2.12
VPS54Q9P1Q0 SNORD114-6-201ENST00000364393 72 ntBASIC1.82□□□□□ -2.12
VPS54Q9P1Q0 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC1.82□□□□□ -2.12
VPS54Q9P1Q0 RNA5SP213-201ENST00000391031 106 ntBASIC1.82□□□□□ -2.12
VPS54Q9P1Q0 MIR208B-201ENST00000401172 77 ntBASIC1.82□□□□□ -2.12
VPS54Q9P1Q0 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.82□□□□□ -2.12
VPS54Q9P1Q0 MTND2P29-201ENST00000438595 412 ntBASIC1.82□□□□□ -2.12
VPS54Q9P1Q0 U8.21-201ENST00000459536 136 ntBASIC1.82□□□□□ -2.12
VPS54Q9P1Q0 HMGN2P26-201ENST00000463169 339 ntBASIC1.82□□□□□ -2.12
VPS54Q9P1Q0 AC132942.1-201ENST00000486753 483 ntBASIC1.82□□□□□ -2.12
VPS54Q9P1Q0 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC1.82□□□□□ -2.12
VPS54Q9P1Q0 RNU6-567P-201ENST00000516746 107 ntBASIC1.82□□□□□ -2.12
VPS54Q9P1Q0 AP005639.2-201ENST00000527592 928 ntBASIC1.82□□□□□ -2.12
VPS54Q9P1Q0 MRPS36P4-201ENST00000534436 298 ntBASIC1.82□□□□□ -2.12
VPS54Q9P1Q0 AC026371.1-201ENST00000551867 419 ntBASIC1.82□□□□□ -2.12
VPS54Q9P1Q0 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC1.82□□□□□ -2.12
VPS54Q9P1Q0 DEFB122-202ENST00000569013 197 ntBASIC1.82□□□□□ -2.12
VPS54Q9P1Q0 AC100830.2-201ENST00000581636 240 ntBASIC1.82□□□□□ -2.12
VPS54Q9P1Q0 RMST_3.1-201ENST00000611651 109 ntBASIC1.82□□□□□ -2.12
VPS54Q9P1Q0 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
VPS54Q9P1Q0 ZNF736P3Y-201ENST00000428264 1465 ntBASIC1.82□□□□□ -2.12
VPS54Q9P1Q0 Y_RNA.99-201ENST00000363138 105 ntBASIC1.81□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 112.1 ms