Protein–RNA interactions for Protein: Q9NPD3

EXOSC4, Exosome complex component RRP41, humanhuman

Known RBP Predictions only

Length 245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC4Q9NPD3 AC087441.2-201ENST00000529141 262 ntBASIC1.23□□□□□ -2.21
EXOSC4Q9NPD3 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC1.23□□□□□ -2.21
EXOSC4Q9NPD3 SUB1P4-201ENST00000566062 339 ntBASIC1.23□□□□□ -2.21
EXOSC4Q9NPD3 SNORA59B-202ENST00000578183 701 ntBASIC1.23□□□□□ -2.21
EXOSC4Q9NPD3 AL121757.2-201ENST00000611223 313 ntBASIC1.23□□□□□ -2.21
EXOSC4Q9NPD3 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC1.23□□□□□ -2.21
EXOSC4Q9NPD3 AC068792.1-201ENST00000621354 417 ntBASIC1.23□□□□□ -2.21
EXOSC4Q9NPD3 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC1.23□□□□□ -2.21
EXOSC4Q9NPD3 AC009541.1-201ENST00000438279 2662 ntBASIC1.22□□□□□ -2.21
EXOSC4Q9NPD3 RNU6-60P-201ENST00000364792 103 ntBASIC1.22□□□□□ -2.21
EXOSC4Q9NPD3 RNU4-66P-201ENST00000365199 138 ntBASIC1.22□□□□□ -2.21
EXOSC4Q9NPD3 RNU4-20P-201ENST00000365601 151 ntBASIC1.22□□□□□ -2.21
EXOSC4Q9NPD3 SNORD116-9-201ENST00000384000 95 ntBASIC1.22□□□□□ -2.21
EXOSC4Q9NPD3 RNU6-38P-201ENST00000384085 107 ntBASIC1.22□□□□□ -2.21
EXOSC4Q9NPD3 SNORD116-3-201ENST00000384287 95 ntBASIC1.22□□□□□ -2.21
EXOSC4Q9NPD3 RNU6-1119P-201ENST00000384349 108 ntBASIC1.22□□□□□ -2.21
EXOSC4Q9NPD3 SNORD116-7-201ENST00000384404 95 ntBASIC1.22□□□□□ -2.21
EXOSC4Q9NPD3 SNORD116-5-201ENST00000384462 95 ntBASIC1.22□□□□□ -2.21
EXOSC4Q9NPD3 MIR758-201ENST00000390227 88 ntBASIC1.22□□□□□ -2.21
EXOSC4Q9NPD3 MIR208B-201ENST00000401172 77 ntBASIC1.22□□□□□ -2.21
EXOSC4Q9NPD3 AP000275.1-201ENST00000411943 390 ntBASIC1.22□□□□□ -2.21
EXOSC4Q9NPD3 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC1.22□□□□□ -2.21
EXOSC4Q9NPD3 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.22□□□□□ -2.21
EXOSC4Q9NPD3 AC123900.1-201ENST00000420390 96 ntBASIC1.22□□□□□ -2.21
EXOSC4Q9NPD3 MTND3P9-201ENST00000429526 346 ntBASIC1.22□□□□□ -2.21
EXOSC4Q9NPD3 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC1.22□□□□□ -2.21
EXOSC4Q9NPD3 AL121890.1-201ENST00000435457 205 ntBASIC1.22□□□□□ -2.21
EXOSC4Q9NPD3 MTCO2P3-201ENST00000442543 421 ntBASIC1.22□□□□□ -2.21
EXOSC4Q9NPD3 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC1.22□□□□□ -2.21
EXOSC4Q9NPD3 AC132942.1-201ENST00000486753 483 ntBASIC1.22□□□□□ -2.21
EXOSC4Q9NPD3 AC005741.1-201ENST00000511094 432 ntBASIC1.22□□□□□ -2.21
EXOSC4Q9NPD3 RNU6-189P-201ENST00000516120 101 ntBASIC1.22□□□□□ -2.21
EXOSC4Q9NPD3 RNU5F-4P-201ENST00000516581 114 ntBASIC1.22□□□□□ -2.21
EXOSC4Q9NPD3 RNU6-612P-201ENST00000516909 102 ntBASIC1.22□□□□□ -2.21
EXOSC4Q9NPD3 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC1.22□□□□□ -2.21
EXOSC4Q9NPD3 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC1.22□□□□□ -2.21
EXOSC4Q9NPD3 AC025423.5-201ENST00000550230 219 ntBASIC1.22□□□□□ -2.21
EXOSC4Q9NPD3 EIF4A1P12-201ENST00000551910 141 ntBASIC1.22□□□□□ -2.21
EXOSC4Q9NPD3 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.22□□□□□ -2.21
EXOSC4Q9NPD3 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC1.22□□□□□ -2.21
EXOSC4Q9NPD3 AC015720.1-201ENST00000565251 277 ntBASIC1.22□□□□□ -2.21
EXOSC4Q9NPD3 MIR3941-201ENST00000582572 103 ntBASIC1.22□□□□□ -2.21
EXOSC4Q9NPD3 AC092747.3-201ENST00000603769 301 ntBASIC1.22□□□□□ -2.21
EXOSC4Q9NPD3 AL356157.2-201ENST00000605122 111 ntBASIC1.22□□□□□ -2.21
EXOSC4Q9NPD3 MIR8074-201ENST00000615081 81 ntBASIC1.22□□□□□ -2.21
EXOSC4Q9NPD3 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.22□□□□□ -2.21
EXOSC4Q9NPD3 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.22□□□□□ -2.21
EXOSC4Q9NPD3 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.21□□□□□ -2.22
EXOSC4Q9NPD3 SNORA69-201ENST00000383895 132 ntBASIC1.21□□□□□ -2.22
EXOSC4Q9NPD3 RNU6-203P-201ENST00000384038 104 ntBASIC1.21□□□□□ -2.22
EXOSC4Q9NPD3 MIR549A-201ENST00000385268 96 ntBASIC1.21□□□□□ -2.22
EXOSC4Q9NPD3 SNORA67.5-201ENST00000391036 107 ntBASIC1.21□□□□□ -2.22
EXOSC4Q9NPD3 RNU6-1093P-201ENST00000391194 107 ntBASIC1.21□□□□□ -2.22
EXOSC4Q9NPD3 USP9YP14-201ENST00000430663 563 ntBASIC1.21□□□□□ -2.22
EXOSC4Q9NPD3 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.21□□□□□ -2.22
EXOSC4Q9NPD3 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC1.21□□□□□ -2.22
EXOSC4Q9NPD3 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC1.21□□□□□ -2.22
EXOSC4Q9NPD3 RPL31P3-201ENST00000458430 332 ntBASIC1.21□□□□□ -2.22
EXOSC4Q9NPD3 RNU6-261P-201ENST00000459506 102 ntBASIC1.21□□□□□ -2.22
EXOSC4Q9NPD3 AC007547.1-201ENST00000462177 490 ntBASIC1.21□□□□□ -2.22
EXOSC4Q9NPD3 AC097473.1-201ENST00000508142 408 ntBASIC1.21□□□□□ -2.22
EXOSC4Q9NPD3 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC1.21□□□□□ -2.22
EXOSC4Q9NPD3 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC1.21□□□□□ -2.22
EXOSC4Q9NPD3 CENPUP1-201ENST00000526649 1202 ntBASIC1.21□□□□□ -2.22
EXOSC4Q9NPD3 AC104383.1-201ENST00000530297 370 ntBASIC1.21□□□□□ -2.22
EXOSC4Q9NPD3 AC008269.2-201ENST00000561915 1105 ntBASIC1.21□□□□□ -2.22
EXOSC4Q9NPD3 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC1.21□□□□□ -2.22
EXOSC4Q9NPD3 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC1.21□□□□□ -2.22
EXOSC4Q9NPD3 CYP4A27P-201ENST00000567218 190 ntBASIC1.21□□□□□ -2.22
EXOSC4Q9NPD3 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC1.21□□□□□ -2.22
EXOSC4Q9NPD3 AC090517.1-201ENST00000569307 266 ntBASIC1.21□□□□□ -2.22
EXOSC4Q9NPD3 MIR5094-201ENST00000578766 85 ntBASIC1.21□□□□□ -2.22
EXOSC4Q9NPD3 AL357078.3-201ENST00000607528 618 ntBASIC1.21□□□□□ -2.22
EXOSC4Q9NPD3 AC017083.3-201ENST00000609955 700 ntBASIC1.21□□□□□ -2.22
EXOSC4Q9NPD3 MIR6863-201ENST00000636112 90 ntBASIC1.21□□□□□ -2.22
EXOSC4Q9NPD3 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
EXOSC4Q9NPD3 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC1.21□□□□□ -2.22
EXOSC4Q9NPD3 U8.1-201ENST00000362843 134 ntBASIC1.2□□□□□ -2.22
EXOSC4Q9NPD3 RNU6-1317P-201ENST00000364582 104 ntBASIC1.2□□□□□ -2.22
EXOSC4Q9NPD3 SNORA32.2-201ENST00000384049 122 ntBASIC1.2□□□□□ -2.22
EXOSC4Q9NPD3 SNORD116-1-201ENST00000384335 95 ntBASIC1.2□□□□□ -2.22
EXOSC4Q9NPD3 RPL30P13-201ENST00000418873 348 ntBASIC1.2□□□□□ -2.22
EXOSC4Q9NPD3 AC012306.1-201ENST00000423267 114 ntBASIC1.2□□□□□ -2.22
EXOSC4Q9NPD3 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC1.2□□□□□ -2.22
EXOSC4Q9NPD3 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC1.2□□□□□ -2.22
EXOSC4Q9NPD3 AC015922.2-201ENST00000435593 184 ntBASIC1.2□□□□□ -2.22
EXOSC4Q9NPD3 HSPE1P24-201ENST00000450782 238 ntBASIC1.2□□□□□ -2.22
EXOSC4Q9NPD3 RNU6-1037P-201ENST00000459571 107 ntBASIC1.2□□□□□ -2.22
EXOSC4Q9NPD3 RPS29P27-201ENST00000463711 170 ntBASIC1.2□□□□□ -2.22
EXOSC4Q9NPD3 SRRM1P2-201ENST00000464531 1192 ntBASIC1.2□□□□□ -2.22
EXOSC4Q9NPD3 RPL9P9-202ENST00000466501 579 ntBASIC1.2□□□□□ -2.22
EXOSC4Q9NPD3 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC1.2□□□□□ -2.22
EXOSC4Q9NPD3 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC1.2□□□□□ -2.22
EXOSC4Q9NPD3 AC025465.4-201ENST00000513422 638 ntBASIC1.2□□□□□ -2.22
EXOSC4Q9NPD3 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC1.2□□□□□ -2.22
EXOSC4Q9NPD3 AP001485.1-201ENST00000604799 199 ntBASIC1.2□□□□□ -2.22
EXOSC4Q9NPD3 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.2□□□□□ -2.22
EXOSC4Q9NPD3 AL158209.2-201ENST00000619266 216 ntBASIC1.2□□□□□ -2.22
EXOSC4Q9NPD3 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.2□□□□□ -2.22
EXOSC4Q9NPD3 MTND5P26-201ENST00000426018 1752 ntBASIC1.19□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 138.4 ms