Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 RNU6-655P-201ENST00000362858 107 ntBASIC3.28□□□□□ -1.88
PCIF1Q9H4Z3 RNU6-1210P-201ENST00000363775 107 ntBASIC3.28□□□□□ -1.88
PCIF1Q9H4Z3 RNU6-378P-201ENST00000384324 107 ntBASIC3.28□□□□□ -1.88
PCIF1Q9H4Z3 MIR491-201ENST00000384877 84 ntBASIC3.28□□□□□ -1.88
PCIF1Q9H4Z3 MIR329-1-201ENST00000385028 80 ntBASIC3.28□□□□□ -1.88
PCIF1Q9H4Z3 MIR483-201ENST00000385070 76 ntBASIC3.28□□□□□ -1.88
PCIF1Q9H4Z3 SNORD115-46-201ENST00000390982 71 ntBASIC3.28□□□□□ -1.88
PCIF1Q9H4Z3 RNU6-1093P-201ENST00000391194 107 ntBASIC3.28□□□□□ -1.88
PCIF1Q9H4Z3 RNA5SP201-201ENST00000410316 124 ntBASIC3.28□□□□□ -1.88
PCIF1Q9H4Z3 RNU2-20P-201ENST00000410425 191 ntBASIC3.28□□□□□ -1.88
PCIF1Q9H4Z3 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC3.28□□□□□ -1.88
PCIF1Q9H4Z3 AC112220.1-201ENST00000434628 355 ntBASIC3.28□□□□□ -1.88
PCIF1Q9H4Z3 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC3.28□□□□□ -1.88
PCIF1Q9H4Z3 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC3.28□□□□□ -1.88
PCIF1Q9H4Z3 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC3.28□□□□□ -1.88
PCIF1Q9H4Z3 AC117440.1-201ENST00000474107 571 ntBASIC3.28□□□□□ -1.88
PCIF1Q9H4Z3 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC3.28□□□□□ -1.88
PCIF1Q9H4Z3 RNA5SP54-201ENST00000516951 92 ntBASIC3.28□□□□□ -1.88
PCIF1Q9H4Z3 AC245166.1-201ENST00000521012 253 ntBASIC3.28□□□□□ -1.88
PCIF1Q9H4Z3 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC3.28□□□□□ -1.88
PCIF1Q9H4Z3 MIR3923-201ENST00000579521 83 ntBASIC3.28□□□□□ -1.88
PCIF1Q9H4Z3 MIR3200-201ENST00000580767 85 ntBASIC3.28□□□□□ -1.88
PCIF1Q9H4Z3 AC011471.1-201ENST00000585766 187 ntBASIC3.28□□□□□ -1.88
PCIF1Q9H4Z3 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.28□□□□□ -1.88
PCIF1Q9H4Z3 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC3.28□□□□□ -1.88
PCIF1Q9H4Z3 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.28□□□□□ -1.88
PCIF1Q9H4Z3 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.28□□□□□ -1.88
PCIF1Q9H4Z3 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
PCIF1Q9H4Z3 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.28□□□□□ -1.88
PCIF1Q9H4Z3 AL079305.1-201ENST00000623159 3008 ntBASIC3.27□□□□□ -1.89
PCIF1Q9H4Z3 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
PCIF1Q9H4Z3 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
PCIF1Q9H4Z3 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
PCIF1Q9H4Z3 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC3.27□□□□□ -1.89
PCIF1Q9H4Z3 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.27□□□□□ -1.89
PCIF1Q9H4Z3 AL359854.1-201ENST00000614203 1594 ntBASIC3.27□□□□□ -1.89
PCIF1Q9H4Z3 snoU2_19.2-201ENST00000363024 80 ntBASIC3.27□□□□□ -1.89
PCIF1Q9H4Z3 RNU6-525P-201ENST00000363685 104 ntBASIC3.27□□□□□ -1.89
PCIF1Q9H4Z3 RNU6-937P-201ENST00000384325 106 ntBASIC3.27□□□□□ -1.89
PCIF1Q9H4Z3 Y_RNA.518-201ENST00000384552 113 ntBASIC3.27□□□□□ -1.89
PCIF1Q9H4Z3 RNA5SP274-201ENST00000410484 108 ntBASIC3.27□□□□□ -1.89
PCIF1Q9H4Z3 UQCRHP3-201ENST00000451503 251 ntBASIC3.27□□□□□ -1.89
PCIF1Q9H4Z3 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC3.27□□□□□ -1.89
PCIF1Q9H4Z3 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.27□□□□□ -1.89
PCIF1Q9H4Z3 SNORD127-201ENST00000458892 86 ntBASIC3.27□□□□□ -1.89
PCIF1Q9H4Z3 RPS27P29-201ENST00000463110 252 ntBASIC3.27□□□□□ -1.89
PCIF1Q9H4Z3 AC007215.1-201ENST00000464893 276 ntBASIC3.27□□□□□ -1.89
PCIF1Q9H4Z3 TRBVB-201ENST00000477100 408 ntBASIC3.27□□□□□ -1.89
PCIF1Q9H4Z3 RPL26P26-201ENST00000480251 434 ntBASIC3.27□□□□□ -1.89
PCIF1Q9H4Z3 AC103975.1-201ENST00000482506 483 ntBASIC3.27□□□□□ -1.89
PCIF1Q9H4Z3 MTND4LP22-201ENST00000508209 276 ntBASIC3.27□□□□□ -1.89
PCIF1Q9H4Z3 Y_RNA.680-201ENST00000516441 93 ntBASIC3.27□□□□□ -1.89
PCIF1Q9H4Z3 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC3.27□□□□□ -1.89
PCIF1Q9H4Z3 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.27□□□□□ -1.89
PCIF1Q9H4Z3 TEX41-243ENST00000614173 190 ntTSL 5 BASIC3.27□□□□□ -1.89
PCIF1Q9H4Z3 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
PCIF1Q9H4Z3 AC010615.1-201ENST00000594254 1764 ntBASIC3.27□□□□□ -1.89
PCIF1Q9H4Z3 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
PCIF1Q9H4Z3 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
PCIF1Q9H4Z3 LINC02555-201ENST00000563933 1951 ntBASIC3.27□□□□□ -1.89
PCIF1Q9H4Z3 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.27□□□□□ -1.89
PCIF1Q9H4Z3 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
PCIF1Q9H4Z3 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.26□□□□□ -1.89
PCIF1Q9H4Z3 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
PCIF1Q9H4Z3 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
PCIF1Q9H4Z3 Y_RNA.84-201ENST00000363011 104 ntBASIC3.26□□□□□ -1.89
PCIF1Q9H4Z3 RNU6-280P-201ENST00000364145 104 ntBASIC3.26□□□□□ -1.89
PCIF1Q9H4Z3 SNORA9-201ENST00000384215 133 ntBASIC3.26□□□□□ -1.89
PCIF1Q9H4Z3 RNU6-1145P-201ENST00000384246 107 ntBASIC3.26□□□□□ -1.89
PCIF1Q9H4Z3 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC3.26□□□□□ -1.89
PCIF1Q9H4Z3 RNU6-1132P-201ENST00000459214 107 ntBASIC3.26□□□□□ -1.89
PCIF1Q9H4Z3 RN7SL75P-201ENST00000461926 281 ntBASIC3.26□□□□□ -1.89
PCIF1Q9H4Z3 AL357075.2-201ENST00000614906 189 ntBASIC3.26□□□□□ -1.89
PCIF1Q9H4Z3 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
PCIF1Q9H4Z3 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC3.26□□□□□ -1.89
PCIF1Q9H4Z3 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
PCIF1Q9H4Z3 IL33-202ENST00000417746 2327 ntTSL 2 BASIC3.26□□□□□ -1.89
PCIF1Q9H4Z3 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.26□□□□□ -1.89
PCIF1Q9H4Z3 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.26□□□□□ -1.89
PCIF1Q9H4Z3 BX322639.1-202ENST00000423987 2213 ntBASIC3.25□□□□□ -1.89
PCIF1Q9H4Z3 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.25□□□□□ -1.89
PCIF1Q9H4Z3 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.25□□□□□ -1.89
PCIF1Q9H4Z3 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC3.25□□□□□ -1.89
PCIF1Q9H4Z3 RNU6-1318P-201ENST00000365389 103 ntBASIC3.25□□□□□ -1.89
PCIF1Q9H4Z3 Y_RNA.447-201ENST00000384184 113 ntBASIC3.25□□□□□ -1.89
PCIF1Q9H4Z3 Y_RNA.476-201ENST00000384347 108 ntBASIC3.25□□□□□ -1.89
PCIF1Q9H4Z3 SNORA48.2-201ENST00000390926 124 ntBASIC3.25□□□□□ -1.89
PCIF1Q9H4Z3 RPL21P3-201ENST00000395517 478 ntBASIC3.25□□□□□ -1.89
PCIF1Q9H4Z3 RNU6-1203P-201ENST00000410703 110 ntBASIC3.25□□□□□ -1.89
PCIF1Q9H4Z3 RNU2-25P-201ENST00000411041 191 ntBASIC3.25□□□□□ -1.89
PCIF1Q9H4Z3 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC3.25□□□□□ -1.89
PCIF1Q9H4Z3 AC022018.1-201ENST00000430685 241 ntBASIC3.25□□□□□ -1.89
PCIF1Q9H4Z3 ARL5AP4-201ENST00000430731 512 ntBASIC3.25□□□□□ -1.89
PCIF1Q9H4Z3 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC3.25□□□□□ -1.89
PCIF1Q9H4Z3 AC108059.2-201ENST00000434626 151 ntBASIC3.25□□□□□ -1.89
PCIF1Q9H4Z3 AC010095.1-201ENST00000443543 144 ntBASIC3.25□□□□□ -1.89
PCIF1Q9H4Z3 AC146507.2-201ENST00000460608 476 ntBASIC3.25□□□□□ -1.89
PCIF1Q9H4Z3 RN7SL633P-201ENST00000488974 297 ntBASIC3.25□□□□□ -1.89
PCIF1Q9H4Z3 SNORA25.14-201ENST00000516481 132 ntBASIC3.25□□□□□ -1.89
PCIF1Q9H4Z3 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC3.25□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 136.6 ms