Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.21□□□□□ -2.06
UPF3AQ9H1J1 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC2.21□□□□□ -2.06
UPF3AQ9H1J1 PCMTD1P1-201ENST00000455560 355 ntBASIC2.21□□□□□ -2.06
UPF3AQ9H1J1 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC2.21□□□□□ -2.06
UPF3AQ9H1J1 AC104435.1-201ENST00000483483 166 ntBASIC2.21□□□□□ -2.06
UPF3AQ9H1J1 RNA5SP384-201ENST00000516615 116 ntBASIC2.21□□□□□ -2.06
UPF3AQ9H1J1 RNU6-612P-201ENST00000516909 102 ntBASIC2.21□□□□□ -2.06
UPF3AQ9H1J1 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC2.21□□□□□ -2.06
UPF3AQ9H1J1 MIR4498-201ENST00000577599 66 ntBASIC2.21□□□□□ -2.06
UPF3AQ9H1J1 AC019193.3-201ENST00000609144 554 ntBASIC2.21□□□□□ -2.06
UPF3AQ9H1J1 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
UPF3AQ9H1J1 RNU6-858P-201ENST00000362436 107 ntBASIC2.2□□□□□ -2.06
UPF3AQ9H1J1 RNU6-593P-201ENST00000364716 112 ntBASIC2.2□□□□□ -2.06
UPF3AQ9H1J1 SNORD32A-201ENST00000364805 84 ntBASIC2.2□□□□□ -2.06
UPF3AQ9H1J1 Y_RNA.315-201ENST00000365117 102 ntBASIC2.2□□□□□ -2.06
UPF3AQ9H1J1 Y_RNA.384-201ENST00000383909 102 ntBASIC2.2□□□□□ -2.06
UPF3AQ9H1J1 Y_RNA.579-201ENST00000390939 94 ntBASIC2.2□□□□□ -2.06
UPF3AQ9H1J1 SNORA17.3-201ENST00000391159 129 ntBASIC2.2□□□□□ -2.06
UPF3AQ9H1J1 SNORA75.4-201ENST00000391278 119 ntBASIC2.2□□□□□ -2.06
UPF3AQ9H1J1 RNU6-174P-201ENST00000410406 106 ntBASIC2.2□□□□□ -2.06
UPF3AQ9H1J1 AC096649.2-201ENST00000416186 393 ntBASIC2.2□□□□□ -2.06
UPF3AQ9H1J1 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC2.2□□□□□ -2.06
UPF3AQ9H1J1 PTGES3P4-201ENST00000426243 356 ntBASIC2.2□□□□□ -2.06
UPF3AQ9H1J1 AC027124.2-201ENST00000428249 105 ntBASIC2.2□□□□□ -2.06
UPF3AQ9H1J1 Z82205.1-201ENST00000428456 297 ntBASIC2.2□□□□□ -2.06
UPF3AQ9H1J1 MTND3P9-201ENST00000429526 346 ntBASIC2.2□□□□□ -2.06
UPF3AQ9H1J1 WARS2P1-201ENST00000429678 537 ntBASIC2.2□□□□□ -2.06
UPF3AQ9H1J1 RPS15AP10-201ENST00000432472 382 ntBASIC2.2□□□□□ -2.06
UPF3AQ9H1J1 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC2.2□□□□□ -2.06
UPF3AQ9H1J1 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC2.2□□□□□ -2.06
UPF3AQ9H1J1 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC2.2□□□□□ -2.06
UPF3AQ9H1J1 AC090255.1-201ENST00000495779 349 ntBASIC2.2□□□□□ -2.06
UPF3AQ9H1J1 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC2.2□□□□□ -2.06
UPF3AQ9H1J1 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC2.2□□□□□ -2.06
UPF3AQ9H1J1 RNU6-120P-201ENST00000516077 103 ntBASIC2.2□□□□□ -2.06
UPF3AQ9H1J1 RNU1-54P-201ENST00000517181 120 ntBASIC2.2□□□□□ -2.06
UPF3AQ9H1J1 AC023824.2-201ENST00000566185 400 ntBASIC2.2□□□□□ -2.06
UPF3AQ9H1J1 MIR5089-201ENST00000580047 84 ntBASIC2.2□□□□□ -2.06
UPF3AQ9H1J1 BNIP3P16-201ENST00000589779 534 ntBASIC2.2□□□□□ -2.06
UPF3AQ9H1J1 VN1R107P-201ENST00000601784 209 ntBASIC2.2□□□□□ -2.06
UPF3AQ9H1J1 AP001836.1-201ENST00000604675 523 ntBASIC2.2□□□□□ -2.06
UPF3AQ9H1J1 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
UPF3AQ9H1J1 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
UPF3AQ9H1J1 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
UPF3AQ9H1J1 MTND4P1-201ENST00000457501 1466 ntBASIC2.2□□□□□ -2.06
UPF3AQ9H1J1 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
UPF3AQ9H1J1 SNORD50.1-201ENST00000362987 71 ntBASIC2.19□□□□□ -2.06
UPF3AQ9H1J1 RNU6-527P-201ENST00000363425 104 ntBASIC2.19□□□□□ -2.06
UPF3AQ9H1J1 Y_RNA.138-201ENST00000363462 102 ntBASIC2.19□□□□□ -2.06
UPF3AQ9H1J1 RNU6-19P-201ENST00000384718 107 ntBASIC2.19□□□□□ -2.06
UPF3AQ9H1J1 RNU6-331P-201ENST00000384724 107 ntBASIC2.19□□□□□ -2.06
UPF3AQ9H1J1 Y_RNA.595-201ENST00000410403 105 ntBASIC2.19□□□□□ -2.06
UPF3AQ9H1J1 AC243428.1-201ENST00000421099 264 ntBASIC2.19□□□□□ -2.06
UPF3AQ9H1J1 MTND1P14-201ENST00000427400 950 ntBASIC2.19□□□□□ -2.06
UPF3AQ9H1J1 AC108667.1-201ENST00000428618 249 ntBASIC2.19□□□□□ -2.06
UPF3AQ9H1J1 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC2.19□□□□□ -2.06
UPF3AQ9H1J1 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC2.19□□□□□ -2.06
UPF3AQ9H1J1 ELOCP24-201ENST00000456370 334 ntBASIC2.19□□□□□ -2.06
UPF3AQ9H1J1 RN7SKP210-201ENST00000459176 261 ntBASIC2.19□□□□□ -2.06
UPF3AQ9H1J1 FO393415.2-201ENST00000480085 343 ntBASIC2.19□□□□□ -2.06
UPF3AQ9H1J1 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC2.19□□□□□ -2.06
UPF3AQ9H1J1 SCARNA17.1-201ENST00000516211 143 ntBASIC2.19□□□□□ -2.06
UPF3AQ9H1J1 SCARNA17.2-201ENST00000516334 143 ntBASIC2.19□□□□□ -2.06
UPF3AQ9H1J1 AP005902.1-201ENST00000521358 186 ntBASIC2.19□□□□□ -2.06
UPF3AQ9H1J1 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC2.19□□□□□ -2.06
UPF3AQ9H1J1 AC009127.3-201ENST00000570531 403 ntBASIC2.19□□□□□ -2.06
UPF3AQ9H1J1 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC2.19□□□□□ -2.06
UPF3AQ9H1J1 RPS15AP11-201ENST00000594193 385 ntBASIC2.19□□□□□ -2.06
UPF3AQ9H1J1 AL356055.1-201ENST00000602528 446 ntBASIC2.19□□□□□ -2.06
UPF3AQ9H1J1 SCARNA17.4-201ENST00000614296 143 ntBASIC2.19□□□□□ -2.06
UPF3AQ9H1J1 AL160413.1-201ENST00000622780 310 ntBASIC2.19□□□□□ -2.06
UPF3AQ9H1J1 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC2.18□□□□□ -2.06
UPF3AQ9H1J1 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.18□□□□□ -2.06
UPF3AQ9H1J1 Y_RNA.11-201ENST00000362375 109 ntBASIC2.18□□□□□ -2.06
UPF3AQ9H1J1 Y_RNA.40-201ENST00000362645 93 ntBASIC2.18□□□□□ -2.06
UPF3AQ9H1J1 Y_RNA.48-201ENST00000362710 103 ntBASIC2.18□□□□□ -2.06
UPF3AQ9H1J1 RNU4-76P-201ENST00000364509 141 ntBASIC2.18□□□□□ -2.06
UPF3AQ9H1J1 RNU6-43P-201ENST00000384302 107 ntBASIC2.18□□□□□ -2.06
UPF3AQ9H1J1 RNU6-1328P-201ENST00000410938 106 ntBASIC2.18□□□□□ -2.06
UPF3AQ9H1J1 RNA5SP247-201ENST00000411181 105 ntBASIC2.18□□□□□ -2.06
UPF3AQ9H1J1 DAP3P1-201ENST00000441522 278 ntBASIC2.18□□□□□ -2.06
UPF3AQ9H1J1 AC079354.2-201ENST00000453523 154 ntBASIC2.18□□□□□ -2.06
UPF3AQ9H1J1 AP001324.2-201ENST00000461163 319 ntBASIC2.18□□□□□ -2.06
UPF3AQ9H1J1 GZMAP1-201ENST00000503054 631 ntBASIC2.18□□□□□ -2.06
UPF3AQ9H1J1 Y_RNA.673-201ENST00000516306 88 ntBASIC2.18□□□□□ -2.06
UPF3AQ9H1J1 Y_RNA.708-201ENST00000516950 96 ntBASIC2.18□□□□□ -2.06
UPF3AQ9H1J1 AC109446.1-201ENST00000566172 220 ntBASIC2.18□□□□□ -2.06
UPF3AQ9H1J1 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC2.18□□□□□ -2.06
UPF3AQ9H1J1 AC090897.2-201ENST00000581715 130 ntBASIC2.18□□□□□ -2.06
UPF3AQ9H1J1 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.18□□□□□ -2.06
UPF3AQ9H1J1 AC078795.3-201ENST00000602913 472 ntBASIC2.18□□□□□ -2.06
UPF3AQ9H1J1 MIR8076-201ENST00000611401 83 ntBASIC2.18□□□□□ -2.06
UPF3AQ9H1J1 AC126177.8-201ENST00000618339 1015 ntBASIC2.18□□□□□ -2.06
UPF3AQ9H1J1 SNORA43.4-201ENST00000629559 138 ntBASIC2.18□□□□□ -2.06
UPF3AQ9H1J1 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
UPF3AQ9H1J1 AC009487.4-201ENST00000624969 3585 ntBASIC2.18□□□□□ -2.06
UPF3AQ9H1J1 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC2.18□□□□□ -2.06
UPF3AQ9H1J1 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.18□□□□□ -2.06
UPF3AQ9H1J1 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
UPF3AQ9H1J1 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 145.7 ms