Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 Y_RNA.451-201ENST00000384200 100 ntBASIC3.13□□□□□ -1.91
CHMP4CQ96CF2 Y_RNA.524-201ENST00000384564 100 ntBASIC3.13□□□□□ -1.91
CHMP4CQ96CF2 Y_RNA.561-201ENST00000384694 100 ntBASIC3.13□□□□□ -1.91
CHMP4CQ96CF2 SNORA12.2-201ENST00000391040 156 ntBASIC3.13□□□□□ -1.91
CHMP4CQ96CF2 SNORA46.1-201ENST00000391069 153 ntBASIC3.13□□□□□ -1.91
CHMP4CQ96CF2 RNU6-1093P-201ENST00000391194 107 ntBASIC3.13□□□□□ -1.91
CHMP4CQ96CF2 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC3.13□□□□□ -1.91
CHMP4CQ96CF2 AC092423.1-201ENST00000430165 186 ntBASIC3.13□□□□□ -1.91
CHMP4CQ96CF2 AL161788.1-201ENST00000441805 169 ntBASIC3.13□□□□□ -1.91
CHMP4CQ96CF2 AC104389.3-201ENST00000445629 235 ntBASIC3.13□□□□□ -1.91
CHMP4CQ96CF2 AP000705.1-201ENST00000454567 350 ntBASIC3.13□□□□□ -1.91
CHMP4CQ96CF2 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC3.13□□□□□ -1.91
CHMP4CQ96CF2 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC3.13□□□□□ -1.91
CHMP4CQ96CF2 SNORA31.15-201ENST00000516771 132 ntBASIC3.13□□□□□ -1.91
CHMP4CQ96CF2 SUB1P3-201ENST00000564581 315 ntBASIC3.13□□□□□ -1.91
CHMP4CQ96CF2 MIR5701-3-201ENST00000578890 82 ntBASIC3.13□□□□□ -1.91
CHMP4CQ96CF2 MIR5701-1-201ENST00000585138 82 ntBASIC3.13□□□□□ -1.91
CHMP4CQ96CF2 AC010928.2-201ENST00000588017 287 ntBASIC3.13□□□□□ -1.91
CHMP4CQ96CF2 MIR5701-2-201ENST00000615634 82 ntBASIC3.13□□□□□ -1.91
CHMP4CQ96CF2 AC010297.1-201ENST00000623948 149 ntBASIC3.13□□□□□ -1.91
CHMP4CQ96CF2 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC3.13□□□□□ -1.91
CHMP4CQ96CF2 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
CHMP4CQ96CF2 U3.9-201ENST00000363823 204 ntBASIC3.12□□□□□ -1.91
CHMP4CQ96CF2 SNORA25.6-201ENST00000364121 118 ntBASIC3.12□□□□□ -1.91
CHMP4CQ96CF2 RNU6-1274P-201ENST00000384557 107 ntBASIC3.12□□□□□ -1.91
CHMP4CQ96CF2 Y_RNA.577-201ENST00000384794 101 ntBASIC3.12□□□□□ -1.91
CHMP4CQ96CF2 RPS26P42-201ENST00000413485 326 ntBASIC3.12□□□□□ -1.91
CHMP4CQ96CF2 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC3.12□□□□□ -1.91
CHMP4CQ96CF2 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC3.12□□□□□ -1.91
CHMP4CQ96CF2 TOMM22P6-201ENST00000465035 409 ntBASIC3.12□□□□□ -1.91
CHMP4CQ96CF2 RNU6-976P-201ENST00000516086 111 ntBASIC3.12□□□□□ -1.91
CHMP4CQ96CF2 VTRNA2-2P-201ENST00000516091 103 ntBASIC3.12□□□□□ -1.91
CHMP4CQ96CF2 HSPE1P18-201ENST00000517602 280 ntBASIC3.12□□□□□ -1.91
CHMP4CQ96CF2 MIR4635-201ENST00000583759 79 ntBASIC3.12□□□□□ -1.91
CHMP4CQ96CF2 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC3.12□□□□□ -1.91
CHMP4CQ96CF2 AL080274.1-201ENST00000605565 220 ntBASIC3.12□□□□□ -1.91
CHMP4CQ96CF2 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC3.12□□□□□ -1.91
CHMP4CQ96CF2 AC005520.5-201ENST00000613926 164 ntBASIC3.12□□□□□ -1.91
CHMP4CQ96CF2 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC3.12□□□□□ -1.91
CHMP4CQ96CF2 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.12□□□□□ -1.91
CHMP4CQ96CF2 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
CHMP4CQ96CF2 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC3.12□□□□□ -1.91
CHMP4CQ96CF2 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC3.12□□□□□ -1.91
CHMP4CQ96CF2 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
CHMP4CQ96CF2 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
CHMP4CQ96CF2 RNU6-859P-201ENST00000362728 107 ntBASIC3.11□□□□□ -1.91
CHMP4CQ96CF2 Y_RNA.197-201ENST00000364004 102 ntBASIC3.11□□□□□ -1.91
CHMP4CQ96CF2 RNU6-541P-201ENST00000384709 110 ntBASIC3.11□□□□□ -1.91
CHMP4CQ96CF2 MIR559-201ENST00000385188 96 ntBASIC3.11□□□□□ -1.91
CHMP4CQ96CF2 RNA5SP201-201ENST00000410316 124 ntBASIC3.11□□□□□ -1.91
CHMP4CQ96CF2 Y_RNA.597-201ENST00000410463 100 ntBASIC3.11□□□□□ -1.91
CHMP4CQ96CF2 MTCO2P12-201ENST00000427426 682 ntBASIC3.11□□□□□ -1.91
CHMP4CQ96CF2 SUMO1P4-201ENST00000429430 302 ntBASIC3.11□□□□□ -1.91
CHMP4CQ96CF2 AC099799.1-201ENST00000439809 192 ntBASIC3.11□□□□□ -1.91
CHMP4CQ96CF2 SRI-210ENST00000490437 570 ntTSL 2 BASIC3.11□□□□□ -1.91
CHMP4CQ96CF2 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC3.11□□□□□ -1.91
CHMP4CQ96CF2 RNA5SP148-201ENST00000516527 94 ntBASIC3.11□□□□□ -1.91
CHMP4CQ96CF2 AC004486.1-201ENST00000546846 233 ntBASIC3.11□□□□□ -1.91
CHMP4CQ96CF2 AL355297.2-201ENST00000604792 129 ntBASIC3.11□□□□□ -1.91
CHMP4CQ96CF2 PCGEM1.1-201ENST00000613431 131 ntBASIC3.11□□□□□ -1.91
CHMP4CQ96CF2 AC022140.2-201ENST00000623500 188 ntBASIC3.11□□□□□ -1.91
CHMP4CQ96CF2 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC3.11□□□□□ -1.91
CHMP4CQ96CF2 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC3.11□□□□□ -1.91
CHMP4CQ96CF2 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
CHMP4CQ96CF2 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC3.1□□□□□ -1.91
CHMP4CQ96CF2 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
CHMP4CQ96CF2 MIR369-201ENST00000362155 70 ntBASIC3.1□□□□□ -1.91
CHMP4CQ96CF2 Y_RNA.813-201ENST00000364639 102 ntBASIC3.1□□□□□ -1.91
CHMP4CQ96CF2 RNU6-378P-201ENST00000384324 107 ntBASIC3.1□□□□□ -1.91
CHMP4CQ96CF2 MIR625-201ENST00000385047 85 ntBASIC3.1□□□□□ -1.91
CHMP4CQ96CF2 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
CHMP4CQ96CF2 RNA5SP210-201ENST00000391034 120 ntBASIC3.1□□□□□ -1.91
CHMP4CQ96CF2 CEP57L1P1-201ENST00000430943 1201 ntBASIC3.1□□□□□ -1.91
CHMP4CQ96CF2 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC3.1□□□□□ -1.91
CHMP4CQ96CF2 Y_RNA.661-201ENST00000516003 99 ntBASIC3.1□□□□□ -1.91
CHMP4CQ96CF2 RNU6-1198P-201ENST00000516904 67 ntBASIC3.1□□□□□ -1.91
CHMP4CQ96CF2 RNU6-699P-201ENST00000517081 110 ntBASIC3.1□□□□□ -1.91
CHMP4CQ96CF2 AC109329.2-201ENST00000519658 482 ntBASIC3.1□□□□□ -1.91
CHMP4CQ96CF2 EIF4A1P12-201ENST00000551910 141 ntBASIC3.1□□□□□ -1.91
CHMP4CQ96CF2 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC3.1□□□□□ -1.91
CHMP4CQ96CF2 MIR1244-1-201ENST00000612829 85 ntBASIC3.1□□□□□ -1.91
CHMP4CQ96CF2 MIR1244-3-201ENST00000635744 85 ntBASIC3.1□□□□□ -1.91
CHMP4CQ96CF2 MIR1244-2-201ENST00000636449 85 ntBASIC3.1□□□□□ -1.91
CHMP4CQ96CF2 MIR1244-4-202ENST00000636813 85 ntBASIC3.1□□□□□ -1.91
CHMP4CQ96CF2 RNU6-1115P-201ENST00000362490 106 ntBASIC3.09□□□□□ -1.91
CHMP4CQ96CF2 RNA5SP125-201ENST00000364843 120 ntBASIC3.09□□□□□ -1.91
CHMP4CQ96CF2 Y_RNA.319-201ENST00000365138 92 ntBASIC3.09□□□□□ -1.91
CHMP4CQ96CF2 Y_RNA.428-201ENST00000384078 102 ntBASIC3.09□□□□□ -1.91
CHMP4CQ96CF2 Y_RNA.463-201ENST00000384271 102 ntBASIC3.09□□□□□ -1.91
CHMP4CQ96CF2 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
CHMP4CQ96CF2 MIR190B-201ENST00000401119 79 ntBASIC3.09□□□□□ -1.91
CHMP4CQ96CF2 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC3.09□□□□□ -1.91
CHMP4CQ96CF2 RNU6-1156P-201ENST00000410365 100 ntBASIC3.09□□□□□ -1.91
CHMP4CQ96CF2 AC003685.2-201ENST00000422795 395 ntBASIC3.09□□□□□ -1.91
CHMP4CQ96CF2 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC3.09□□□□□ -1.91
CHMP4CQ96CF2 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC3.09□□□□□ -1.91
CHMP4CQ96CF2 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC3.09□□□□□ -1.91
CHMP4CQ96CF2 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC3.09□□□□□ -1.91
CHMP4CQ96CF2 AC096725.1-201ENST00000514266 313 ntBASIC3.09□□□□□ -1.91
CHMP4CQ96CF2 RNA5SP282-201ENST00000516355 108 ntBASIC3.09□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 9.5 ms