Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC1.52□□□□□ -2.17
CCDC65Q8IXS2 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.52□□□□□ -2.17
CCDC65Q8IXS2 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC1.52□□□□□ -2.17
CCDC65Q8IXS2 AL121601.2-201ENST00000438019 707 ntBASIC1.52□□□□□ -2.17
CCDC65Q8IXS2 TRAPPC2P3-201ENST00000443200 321 ntBASIC1.52□□□□□ -2.17
CCDC65Q8IXS2 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.52□□□□□ -2.17
CCDC65Q8IXS2 RNU6-1038P-201ENST00000516516 104 ntBASIC1.52□□□□□ -2.17
CCDC65Q8IXS2 RNU6-1069P-201ENST00000516612 133 ntBASIC1.52□□□□□ -2.17
CCDC65Q8IXS2 RNU6-1098P-201ENST00000516772 96 ntBASIC1.52□□□□□ -2.17
CCDC65Q8IXS2 AC104383.1-201ENST00000530297 370 ntBASIC1.52□□□□□ -2.17
CCDC65Q8IXS2 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC1.52□□□□□ -2.17
CCDC65Q8IXS2 AL161670.1-201ENST00000554348 137 ntBASIC1.52□□□□□ -2.17
CCDC65Q8IXS2 CYP4A27P-201ENST00000567218 190 ntBASIC1.52□□□□□ -2.17
CCDC65Q8IXS2 AC010620.1-201ENST00000601088 1102 ntBASIC1.52□□□□□ -2.17
CCDC65Q8IXS2 RN7SKP299-201ENST00000606679 301 ntBASIC1.52□□□□□ -2.17
CCDC65Q8IXS2 AC064836.2-201ENST00000609491 462 ntBASIC1.52□□□□□ -2.17
CCDC65Q8IXS2 AC103705.1-201ENST00000619013 241 ntBASIC1.52□□□□□ -2.17
CCDC65Q8IXS2 AC068792.1-201ENST00000621354 417 ntBASIC1.52□□□□□ -2.17
CCDC65Q8IXS2 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
CCDC65Q8IXS2 ZNF72P-201ENST00000425869 1908 ntBASIC1.51□□□□□ -2.17
CCDC65Q8IXS2 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC1.51□□□□□ -2.17
CCDC65Q8IXS2 Y_RNA.296-201ENST00000364930 108 ntBASIC1.51□□□□□ -2.17
CCDC65Q8IXS2 RNU6-203P-201ENST00000384038 104 ntBASIC1.51□□□□□ -2.17
CCDC65Q8IXS2 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.51□□□□□ -2.17
CCDC65Q8IXS2 SNORA17.3-201ENST00000391159 129 ntBASIC1.51□□□□□ -2.17
CCDC65Q8IXS2 RNU4-55P-201ENST00000410731 137 ntBASIC1.51□□□□□ -2.17
CCDC65Q8IXS2 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC1.51□□□□□ -2.17
CCDC65Q8IXS2 RPL30P13-201ENST00000418873 348 ntBASIC1.51□□□□□ -2.17
CCDC65Q8IXS2 MTATP6P17-201ENST00000431030 672 ntBASIC1.51□□□□□ -2.17
CCDC65Q8IXS2 SNRPEP8-201ENST00000442866 260 ntBASIC1.51□□□□□ -2.17
CCDC65Q8IXS2 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC1.51□□□□□ -2.17
CCDC65Q8IXS2 TPTE2P5-203ENST00000458118 728 ntBASIC1.51□□□□□ -2.17
CCDC65Q8IXS2 RNU1-92P-201ENST00000517017 135 ntBASIC1.51□□□□□ -2.17
CCDC65Q8IXS2 RNU6-323P-201ENST00000521915 107 ntBASIC1.51□□□□□ -2.17
CCDC65Q8IXS2 CENPUP1-201ENST00000526649 1202 ntBASIC1.51□□□□□ -2.17
CCDC65Q8IXS2 MIR7974-201ENST00000615835 79 ntBASIC1.51□□□□□ -2.17
CCDC65Q8IXS2 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.51□□□□□ -2.17
CCDC65Q8IXS2 MTND5P9-201ENST00000503854 1755 ntBASIC1.51□□□□□ -2.17
CCDC65Q8IXS2 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.5□□□□□ -2.17
CCDC65Q8IXS2 RNU1-62P-201ENST00000362599 164 ntBASIC1.5□□□□□ -2.17
CCDC65Q8IXS2 RNU6-82P-201ENST00000363970 107 ntBASIC1.5□□□□□ -2.17
CCDC65Q8IXS2 Y_RNA.378-201ENST00000365652 113 ntBASIC1.5□□□□□ -2.17
CCDC65Q8IXS2 SNORD116-9-201ENST00000384000 95 ntBASIC1.5□□□□□ -2.17
CCDC65Q8IXS2 SNORD116-3-201ENST00000384287 95 ntBASIC1.5□□□□□ -2.17
CCDC65Q8IXS2 SNORD116-7-201ENST00000384404 95 ntBASIC1.5□□□□□ -2.17
CCDC65Q8IXS2 SNORD116-5-201ENST00000384462 95 ntBASIC1.5□□□□□ -2.17
CCDC65Q8IXS2 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC1.5□□□□□ -2.17
CCDC65Q8IXS2 RNA5SP57-201ENST00000459463 123 ntBASIC1.5□□□□□ -2.17
CCDC65Q8IXS2 RNU6-261P-201ENST00000459506 102 ntBASIC1.5□□□□□ -2.17
CCDC65Q8IXS2 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC1.5□□□□□ -2.17
CCDC65Q8IXS2 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.5□□□□□ -2.17
CCDC65Q8IXS2 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC1.5□□□□□ -2.17
CCDC65Q8IXS2 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.5□□□□□ -2.17
CCDC65Q8IXS2 AP003034.1-201ENST00000534621 422 ntBASIC1.5□□□□□ -2.17
CCDC65Q8IXS2 AC021231.3-201ENST00000558497 370 ntBASIC1.5□□□□□ -2.17
CCDC65Q8IXS2 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC1.5□□□□□ -2.17
CCDC65Q8IXS2 AC005786.1-201ENST00000588553 154 ntBASIC1.5□□□□□ -2.17
CCDC65Q8IXS2 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC1.5□□□□□ -2.17
CCDC65Q8IXS2 AC130454.1-201ENST00000622948 401 ntBASIC1.5□□□□□ -2.17
CCDC65Q8IXS2 RNU6-661P-201ENST00000362409 107 ntBASIC1.49□□□□□ -2.17
CCDC65Q8IXS2 RNU1-76P-201ENST00000362903 159 ntBASIC1.49□□□□□ -2.17
CCDC65Q8IXS2 Y_RNA.409-201ENST00000383990 98 ntBASIC1.49□□□□□ -2.17
CCDC65Q8IXS2 SNORA32.2-201ENST00000384049 122 ntBASIC1.49□□□□□ -2.17
CCDC65Q8IXS2 MIR758-201ENST00000390227 88 ntBASIC1.49□□□□□ -2.17
CCDC65Q8IXS2 MTCO3P41-201ENST00000414801 328 ntBASIC1.49□□□□□ -2.17
CCDC65Q8IXS2 AC012306.1-201ENST00000423267 114 ntBASIC1.49□□□□□ -2.17
CCDC65Q8IXS2 AC139712.2-201ENST00000424302 339 ntBASIC1.49□□□□□ -2.17
CCDC65Q8IXS2 MTCO1P44-201ENST00000441935 243 ntBASIC1.49□□□□□ -2.17
CCDC65Q8IXS2 AC098826.2-201ENST00000452011 651 ntBASIC1.49□□□□□ -2.17
CCDC65Q8IXS2 AC083798.1-201ENST00000472671 131 ntBASIC1.49□□□□□ -2.17
CCDC65Q8IXS2 RNU6-189P-201ENST00000516120 101 ntBASIC1.49□□□□□ -2.17
CCDC65Q8IXS2 SNORA31.17-201ENST00000516953 127 ntBASIC1.49□□□□□ -2.17
CCDC65Q8IXS2 RNU6-835P-201ENST00000516974 104 ntBASIC1.49□□□□□ -2.17
CCDC65Q8IXS2 DEFB131C-201ENST00000528817 165 ntBASIC1.49□□□□□ -2.17
CCDC65Q8IXS2 MTND1P15-201ENST00000579262 949 ntBASIC1.49□□□□□ -2.17
CCDC65Q8IXS2 AL512598.1-201ENST00000610158 273 ntBASIC1.49□□□□□ -2.17
CCDC65Q8IXS2 AC139792.3-201ENST00000623525 224 ntBASIC1.49□□□□□ -2.17
CCDC65Q8IXS2 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
CCDC65Q8IXS2 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC1.48□□□□□ -2.17
CCDC65Q8IXS2 MIR424-201ENST00000362227 98 ntBASIC1.48□□□□□ -2.17
CCDC65Q8IXS2 RNU6-112P-201ENST00000363599 104 ntBASIC1.48□□□□□ -2.17
CCDC65Q8IXS2 RNU4-56P-201ENST00000364700 142 ntBASIC1.48□□□□□ -2.17
CCDC65Q8IXS2 SNORA69-201ENST00000383895 132 ntBASIC1.48□□□□□ -2.17
CCDC65Q8IXS2 SNORD26-201ENST00000384147 75 ntBASIC1.48□□□□□ -2.17
CCDC65Q8IXS2 RNU6-439P-201ENST00000384188 106 ntBASIC1.48□□□□□ -2.17
CCDC65Q8IXS2 SNORD116-1-201ENST00000384335 95 ntBASIC1.48□□□□□ -2.17
CCDC65Q8IXS2 RNU6-296P-201ENST00000384608 107 ntBASIC1.48□□□□□ -2.17
CCDC65Q8IXS2 RNU4-62P-201ENST00000410125 130 ntBASIC1.48□□□□□ -2.17
CCDC65Q8IXS2 USP9YP14-201ENST00000430663 563 ntBASIC1.48□□□□□ -2.17
CCDC65Q8IXS2 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC1.48□□□□□ -2.17
CCDC65Q8IXS2 AC016925.1-201ENST00000458303 298 ntBASIC1.48□□□□□ -2.17
CCDC65Q8IXS2 RPL31P3-201ENST00000458430 332 ntBASIC1.48□□□□□ -2.17
CCDC65Q8IXS2 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC1.48□□□□□ -2.17
CCDC65Q8IXS2 RNU6-612P-201ENST00000516909 102 ntBASIC1.48□□□□□ -2.17
CCDC65Q8IXS2 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC1.48□□□□□ -2.17
CCDC65Q8IXS2 SUB1P3-201ENST00000564581 315 ntBASIC1.48□□□□□ -2.17
CCDC65Q8IXS2 MIR5692C1-201ENST00000585309 91 ntBASIC1.48□□□□□ -2.17
CCDC65Q8IXS2 MIR6715A-201ENST00000615929 79 ntBASIC1.48□□□□□ -2.17
CCDC65Q8IXS2 AC068205.3-201ENST00000636385 468 ntBASIC1.48□□□□□ -2.17
CCDC65Q8IXS2 MTND5P26-201ENST00000426018 1752 ntBASIC1.48□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 169 ms