| HOOK3 | Q86VS8 | AL691447.3-201 | ENST00000635020 | 330 nt | BASIC | 1.94 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | GS1-279B7.1-204 | ENST00000641809 | 378 nt | BASIC | 1.94 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | LINC02555-201 | ENST00000563933 | 1951 nt | BASIC | 1.94 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | AC233981.2-201 | ENST00000611524 | 1614 nt | BASIC | 1.93 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | SNORD114-6-201 | ENST00000364393 | 72 nt | BASIC | 1.93 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | Y_RNA.436-201 | ENST00000384097 | 102 nt | BASIC | 1.93 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | SNORA48.1-201 | ENST00000390879 | 135 nt | BASIC | 1.93 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | AL356432.1-201 | ENST00000405809 | 419 nt | BASIC | 1.93 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | RNU2-20P-201 | ENST00000410425 | 191 nt | BASIC | 1.93 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | AC016907.1-201 | ENST00000419483 | 435 nt | BASIC | 1.93 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | DLGAP5P1-201 | ENST00000430307 | 464 nt | BASIC | 1.93 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | AL603839.2-201 | ENST00000437060 | 546 nt | TSL 5 BASIC | 1.93 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | AMD1P1-201 | ENST00000457220 | 922 nt | BASIC | 1.93 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | RNU1-131P-201 | ENST00000458943 | 161 nt | BASIC | 1.93 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | AC083904.1-201 | ENST00000487828 | 231 nt | BASIC | 1.93 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | RNU6-1098P-201 | ENST00000516772 | 96 nt | BASIC | 1.93 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | AC022254.1-201 | ENST00000567857 | 235 nt | BASIC | 1.93 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | AC010525.2-201 | ENST00000590920 | 195 nt | BASIC | 1.93 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | AC097065.2-201 | ENST00000608159 | 533 nt | BASIC | 1.93 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | AC015540.1-201 | ENST00000615828 | 501 nt | BASIC | 1.93 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | MIR1321-201 | ENST00000637766 | 79 nt | BASIC | 1.93 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | MIPOL1-203 | ENST00000537471 | 5954 nt | APPRIS P1 TSL 5 BASIC | 1.92 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | TDRD15-202 | ENST00000622654 | 5805 nt | APPRIS P1 BASIC | 1.92 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | CBX3P1-201 | ENST00000325243 | 554 nt | BASIC | 1.92 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | RNU1-76P-201 | ENST00000362903 | 159 nt | BASIC | 1.92 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | SNORA16.1-201 | ENST00000364597 | 132 nt | BASIC | 1.92 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | SNORA32.2-201 | ENST00000384049 | 122 nt | BASIC | 1.92 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | MIR450B-201 | ENST00000401182 | 78 nt | BASIC | 1.92 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | AL500522.1-201 | ENST00000423667 | 318 nt | TSL 3 BASIC | 1.92 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | TOMM22P6-201 | ENST00000465035 | 409 nt | BASIC | 1.92 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | RNU5F-4P-201 | ENST00000516581 | 114 nt | BASIC | 1.92 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | RNU6-1332P-201 | ENST00000516666 | 104 nt | BASIC | 1.92 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | AC090517.1-201 | ENST00000569307 | 266 nt | BASIC | 1.92 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | KTN1-204 | ENST00000395311 | 4516 nt | APPRIS ALT2 TSL 1 (best) BASIC | 1.92 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | WWP1P1-201 | ENST00000466609 | 2769 nt | BASIC | 1.92 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | SNORD31B-201 | ENST00000364977 | 69 nt | BASIC | 1.91 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | RNU6-438P-201 | ENST00000365561 | 103 nt | BASIC | 1.91 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | SNORA29-201 | ENST00000384183 | 140 nt | BASIC | 1.91 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | MIR583-201 | ENST00000384846 | 75 nt | BASIC | 1.91 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | RNU6-1093P-201 | ENST00000391194 | 107 nt | BASIC | 1.91 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | RNU6-325P-201 | ENST00000411132 | 105 nt | BASIC | 1.91 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | AC009310.1-201 | ENST00000414414 | 451 nt | BASIC | 1.91 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | ATP6V0E1P3-201 | ENST00000420036 | 246 nt | BASIC | 1.91 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | AL360091.2-201 | ENST00000446847 | 650 nt | TSL 5 BASIC | 1.91 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | RNU7-14P-201 | ENST00000459331 | 62 nt | BASIC | 1.91 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | LINC00971-201 | ENST00000482721 | 535 nt | TSL 2 BASIC | 1.91 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | MTCO1P29-201 | ENST00000496868 | 288 nt | BASIC | 1.91 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | AC107393.1-201 | ENST00000512403 | 346 nt | BASIC | 1.91 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | TRAV1-1-201 | ENST00000542354 | 392 nt | APPRIS P1 BASIC | 1.91 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | CPDP1-201 | ENST00000579660 | 283 nt | BASIC | 1.91 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | MIR3618-201 | ENST00000580330 | 88 nt | BASIC | 1.91 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | MIR4713-201 | ENST00000582691 | 75 nt | BASIC | 1.91 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | AC010928.2-201 | ENST00000588017 | 287 nt | BASIC | 1.91 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | MIR6715A-201 | ENST00000615929 | 79 nt | BASIC | 1.91 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | MUC15-203 | ENST00000455601 | 3156 nt | APPRIS P1 TSL 2 BASIC | 1.9 | □□□□□ -2.1 | | |
| HOOK3 | Q86VS8 | MIR340-201 | ENST00000362125 | 95 nt | BASIC | 1.9 | □□□□□ -2.11 | | |
| HOOK3 | Q86VS8 | RNU6-451P-201 | ENST00000362921 | 107 nt | BASIC | 1.9 | □□□□□ -2.11 | | |
| HOOK3 | Q86VS8 | RNU5B-2P-201 | ENST00000363036 | 113 nt | BASIC | 1.9 | □□□□□ -2.11 | | |
| HOOK3 | Q86VS8 | RNU6-623P-201 | ENST00000363143 | 105 nt | BASIC | 1.9 | □□□□□ -2.11 | | |
| HOOK3 | Q86VS8 | RNU6-254P-201 | ENST00000363377 | 107 nt | BASIC | 1.9 | □□□□□ -2.11 | | |
| HOOK3 | Q86VS8 | RNY3P3-201 | ENST00000363816 | 102 nt | BASIC | 1.9 | □□□□□ -2.11 | | |
| HOOK3 | Q86VS8 | RNU6-1286P-201 | ENST00000383871 | 107 nt | BASIC | 1.9 | □□□□□ -2.11 | | |
| HOOK3 | Q86VS8 | RNU6-128P-201 | ENST00000383976 | 107 nt | BASIC | 1.9 | □□□□□ -2.11 | | |
| HOOK3 | Q86VS8 | MIR504-201 | ENST00000385065 | 83 nt | BASIC | 1.9 | □□□□□ -2.11 | | |
| HOOK3 | Q86VS8 | AL590002.1-201 | ENST00000406554 | 418 nt | BASIC | 1.9 | □□□□□ -2.11 | | |
| HOOK3 | Q86VS8 | SNRPG-202 | ENST00000413456 | 398 nt | TSL 3 BASIC | 1.9 | □□□□□ -2.11 | | |
| HOOK3 | Q86VS8 | SNRPEP10-201 | ENST00000420249 | 274 nt | BASIC | 1.9 | □□□□□ -2.11 | | |
| HOOK3 | Q86VS8 | NDUFA5P4-201 | ENST00000436704 | 385 nt | BASIC | 1.9 | □□□□□ -2.11 | | |
| HOOK3 | Q86VS8 | SNRPEP8-201 | ENST00000442866 | 260 nt | BASIC | 1.9 | □□□□□ -2.11 | | |
| HOOK3 | Q86VS8 | SNRPG-205 | ENST00000449935 | 428 nt | TSL 1 (best) BASIC | 1.9 | □□□□□ -2.11 | | |
| HOOK3 | Q86VS8 | snoU13.6-201 | ENST00000458785 | 104 nt | BASIC | 1.9 | □□□□□ -2.11 | | |
| HOOK3 | Q86VS8 | RNA5SP57-201 | ENST00000459463 | 123 nt | BASIC | 1.9 | □□□□□ -2.11 | | |
| HOOK3 | Q86VS8 | AL627309.4-201 | ENST00000496488 | 457 nt | TSL 5 BASIC | 1.9 | □□□□□ -2.11 | | |
| HOOK3 | Q86VS8 | AC108037.1-201 | ENST00000514103 | 423 nt | TSL 3 BASIC | 1.9 | □□□□□ -2.11 | | |
| HOOK3 | Q86VS8 | Y_RNA.665-201 | ENST00000516177 | 98 nt | BASIC | 1.9 | □□□□□ -2.11 | | |
| HOOK3 | Q86VS8 | RNU6-314P-201 | ENST00000516574 | 104 nt | BASIC | 1.9 | □□□□□ -2.11 | | |
| HOOK3 | Q86VS8 | AC026371.1-201 | ENST00000551867 | 419 nt | BASIC | 1.9 | □□□□□ -2.11 | | |
| HOOK3 | Q86VS8 | AC009107.1-201 | ENST00000561923 | 330 nt | TSL 3 BASIC | 1.9 | □□□□□ -2.11 | | |
| HOOK3 | Q86VS8 | AC005786.1-201 | ENST00000588553 | 154 nt | BASIC | 1.9 | □□□□□ -2.11 | | |
| HOOK3 | Q86VS8 | CYLC2-204 | ENST00000612124 | 1817 nt | APPRIS P1 TSL 1 (best) BASIC | 1.89 | □□□□□ -2.11 | | |
| HOOK3 | Q86VS8 | Y_RNA.123-201 | ENST00000363338 | 102 nt | BASIC | 1.89 | □□□□□ -2.11 | | |
| HOOK3 | Q86VS8 | MIR181A1-201 | ENST00000385026 | 110 nt | BASIC | 1.89 | □□□□□ -2.11 | | |
| HOOK3 | Q86VS8 | TRAJ21-201 | ENST00000390516 | 55 nt | APPRIS P1 BASIC | 1.89 | □□□□□ -2.11 | | |
| HOOK3 | Q86VS8 | SNORA12.2-201 | ENST00000391040 | 156 nt | BASIC | 1.89 | □□□□□ -2.11 | | |
| HOOK3 | Q86VS8 | AL033519.2-201 | ENST00000403958 | 392 nt | BASIC | 1.89 | □□□□□ -2.11 | | |
| HOOK3 | Q86VS8 | RPS26P42-201 | ENST00000413485 | 326 nt | BASIC | 1.89 | □□□□□ -2.11 | | |
| HOOK3 | Q86VS8 | AC035139.1-201 | ENST00000423256 | 273 nt | TSL 3 BASIC | 1.89 | □□□□□ -2.11 | | |
| HOOK3 | Q86VS8 | LINC01594-201 | ENST00000445083 | 611 nt | TSL 5 BASIC | 1.89 | □□□□□ -2.11 | | |
| HOOK3 | Q86VS8 | MTCO2P7-201 | ENST00000446518 | 666 nt | BASIC | 1.89 | □□□□□ -2.11 | | |
| HOOK3 | Q86VS8 | PPP1R2P5-201 | ENST00000457256 | 603 nt | BASIC | 1.89 | □□□□□ -2.11 | | |
| HOOK3 | Q86VS8 | AC016925.1-201 | ENST00000458303 | 298 nt | BASIC | 1.89 | □□□□□ -2.11 | | |
| HOOK3 | Q86VS8 | HMGN2P26-201 | ENST00000463169 | 339 nt | BASIC | 1.89 | □□□□□ -2.11 | | |
| HOOK3 | Q86VS8 | RPS23P5-201 | ENST00000495419 | 428 nt | BASIC | 1.89 | □□□□□ -2.11 | | |
| HOOK3 | Q86VS8 | AC110799.1-201 | ENST00000509098 | 449 nt | TSL 3 BASIC | 1.89 | □□□□□ -2.11 | | |
| HOOK3 | Q86VS8 | RNVU1-2-201 | ENST00000516326 | 135 nt | BASIC | 1.89 | □□□□□ -2.11 | | |
| HOOK3 | Q86VS8 | IGHVII-53-1-201 | ENST00000519538 | 255 nt | BASIC | 1.89 | □□□□□ -2.11 | | |
| HOOK3 | Q86VS8 | AC099520.1-206 | ENST00000523434 | 486 nt | TSL 3 BASIC | 1.89 | □□□□□ -2.11 | | |
| HOOK3 | Q86VS8 | AC009754.1-201 | ENST00000566282 | 540 nt | TSL 4 BASIC | 1.89 | □□□□□ -2.11 | | |
| HOOK3 | Q86VS8 | FGF7P1-201 | ENST00000582820 | 288 nt | BASIC | 1.89 | □□□□□ -2.11 | | |
| HOOK3 | Q86VS8 | AC104458.1-201 | ENST00000608243 | 463 nt | BASIC | 1.89 | □□□□□ -2.11 | | |