Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC104465.1-201ENST00000611365 139 ntBASIC3.29□□□□□ -1.88
USP39Q53GS9 AL138880.2-201ENST00000616214 239 ntBASIC3.29□□□□□ -1.88
USP39Q53GS9 AC027309.3-201ENST00000623419 351 ntBASIC3.29□□□□□ -1.88
USP39Q53GS9 SCARNA4-202ENST00000625402 129 ntBASIC3.29□□□□□ -1.88
USP39Q53GS9 AL137790.1-201ENST00000634283 177 ntBASIC3.29□□□□□ -1.88
USP39Q53GS9 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
USP39Q53GS9 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
USP39Q53GS9 BX322639.1-202ENST00000423987 2213 ntBASIC3.28□□□□□ -1.88
USP39Q53GS9 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.28□□□□□ -1.88
USP39Q53GS9 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.28□□□□□ -1.88
USP39Q53GS9 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.28□□□□□ -1.88
USP39Q53GS9 RNU6-741P-201ENST00000383889 107 ntBASIC3.28□□□□□ -1.88
USP39Q53GS9 Y_RNA.398-201ENST00000383952 99 ntBASIC3.28□□□□□ -1.88
USP39Q53GS9 Y_RNA.570-201ENST00000384750 101 ntBASIC3.28□□□□□ -1.88
USP39Q53GS9 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
USP39Q53GS9 RNU2-68P-201ENST00000410878 191 ntBASIC3.28□□□□□ -1.88
USP39Q53GS9 RNU5A-5P-201ENST00000411054 116 ntBASIC3.28□□□□□ -1.88
USP39Q53GS9 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC3.28□□□□□ -1.88
USP39Q53GS9 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC3.28□□□□□ -1.88
USP39Q53GS9 AC243964.1-201ENST00000441814 261 ntBASIC3.28□□□□□ -1.88
USP39Q53GS9 AL353705.4-201ENST00000449661 238 ntBASIC3.28□□□□□ -1.88
USP39Q53GS9 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC3.28□□□□□ -1.88
USP39Q53GS9 SNORD2.1-201ENST00000458762 69 ntBASIC3.28□□□□□ -1.88
USP39Q53GS9 AC091179.1-201ENST00000461606 579 ntBASIC3.28□□□□□ -1.88
USP39Q53GS9 AP002884.2-201ENST00000471647 395 ntBASIC3.28□□□□□ -1.88
USP39Q53GS9 RPL30P14-201ENST00000482744 348 ntBASIC3.28□□□□□ -1.88
USP39Q53GS9 AC091959.1-201ENST00000495857 238 ntBASIC3.28□□□□□ -1.88
USP39Q53GS9 SNORA43.2-201ENST00000516652 128 ntBASIC3.28□□□□□ -1.88
USP39Q53GS9 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.28□□□□□ -1.88
USP39Q53GS9 RNU6-567P-201ENST00000516746 107 ntBASIC3.28□□□□□ -1.88
USP39Q53GS9 AC027288.2-201ENST00000553028 243 ntBASIC3.28□□□□□ -1.88
USP39Q53GS9 MIR4308-201ENST00000580634 81 ntBASIC3.28□□□□□ -1.88
USP39Q53GS9 AC018692.3-201ENST00000623929 123 ntBASIC3.28□□□□□ -1.88
USP39Q53GS9 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC3.28□□□□□ -1.88
USP39Q53GS9 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
USP39Q53GS9 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.28□□□□□ -1.88
USP39Q53GS9 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
USP39Q53GS9 AC135776.4-201ENST00000624300 1904 ntBASIC3.27□□□□□ -1.89
USP39Q53GS9 FAM35CP-201ENST00000554755 2470 ntBASIC3.27□□□□□ -1.89
USP39Q53GS9 Y_RNA.8-201ENST00000362353 102 ntBASIC3.27□□□□□ -1.89
USP39Q53GS9 RNU6-961P-201ENST00000363893 105 ntBASIC3.27□□□□□ -1.89
USP39Q53GS9 RNU6-923P-201ENST00000364753 107 ntBASIC3.27□□□□□ -1.89
USP39Q53GS9 RNU6-1081P-201ENST00000384537 107 ntBASIC3.27□□□□□ -1.89
USP39Q53GS9 SNORA44-201ENST00000384584 132 ntBASIC3.27□□□□□ -1.89
USP39Q53GS9 MIR10B-201ENST00000385011 110 ntBASIC3.27□□□□□ -1.89
USP39Q53GS9 MIR153-2-201ENST00000385225 87 ntBASIC3.27□□□□□ -1.89
USP39Q53GS9 AC126124.2-201ENST00000413542 321 ntBASIC3.27□□□□□ -1.89
USP39Q53GS9 AL356867.1-201ENST00000429623 299 ntBASIC3.27□□□□□ -1.89
USP39Q53GS9 MTCO1P5-201ENST00000433573 344 ntBASIC3.27□□□□□ -1.89
USP39Q53GS9 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC3.27□□□□□ -1.89
USP39Q53GS9 AP001324.2-201ENST00000461163 319 ntBASIC3.27□□□□□ -1.89
USP39Q53GS9 AC087477.1-201ENST00000465747 340 ntBASIC3.27□□□□□ -1.89
USP39Q53GS9 AP001025.1-201ENST00000486139 332 ntBASIC3.27□□□□□ -1.89
USP39Q53GS9 RPL23AP49-201ENST00000492925 468 ntBASIC3.27□□□□□ -1.89
USP39Q53GS9 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC3.27□□□□□ -1.89
USP39Q53GS9 SNORA70.16-201ENST00000516390 95 ntBASIC3.27□□□□□ -1.89
USP39Q53GS9 Y_RNA.679-201ENST00000516416 91 ntBASIC3.27□□□□□ -1.89
USP39Q53GS9 SNORA27.4-201ENST00000516650 95 ntBASIC3.27□□□□□ -1.89
USP39Q53GS9 RN7SKP49-201ENST00000516675 260 ntBASIC3.27□□□□□ -1.89
USP39Q53GS9 RNU7-110P-201ENST00000516891 62 ntBASIC3.27□□□□□ -1.89
USP39Q53GS9 RNU6-703P-201ENST00000516946 107 ntBASIC3.27□□□□□ -1.89
USP39Q53GS9 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC3.27□□□□□ -1.89
USP39Q53GS9 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
USP39Q53GS9 RPL21P9-201ENST00000556149 474 ntBASIC3.27□□□□□ -1.89
USP39Q53GS9 TRAV28-201ENST00000557548 323 ntBASIC3.27□□□□□ -1.89
USP39Q53GS9 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC3.27□□□□□ -1.89
USP39Q53GS9 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.27□□□□□ -1.89
USP39Q53GS9 AC024153.1-201ENST00000603103 365 ntBASIC3.27□□□□□ -1.89
USP39Q53GS9 AC037487.3-201ENST00000606668 112 ntBASIC3.27□□□□□ -1.89
USP39Q53GS9 UBE2Q2P6-201ENST00000612666 153 ntBASIC3.27□□□□□ -1.89
USP39Q53GS9 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
USP39Q53GS9 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
USP39Q53GS9 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
USP39Q53GS9 SRP72P2-201ENST00000344851 1979 ntBASIC3.27□□□□□ -1.89
USP39Q53GS9 AC017071.1-201ENST00000564407 2204 ntBASIC3.27□□□□□ -1.89
USP39Q53GS9 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.26□□□□□ -1.89
USP39Q53GS9 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.26□□□□□ -1.89
USP39Q53GS9 AC004944.1-201ENST00000517807 3059 ntBASIC3.26□□□□□ -1.89
USP39Q53GS9 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
USP39Q53GS9 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.26□□□□□ -1.89
USP39Q53GS9 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
USP39Q53GS9 SNORA25.1-201ENST00000362326 128 ntBASIC3.26□□□□□ -1.89
USP39Q53GS9 RNU6-942P-201ENST00000363002 107 ntBASIC3.26□□□□□ -1.89
USP39Q53GS9 RNU5B-2P-201ENST00000363036 113 ntBASIC3.26□□□□□ -1.89
USP39Q53GS9 RNU6-626P-201ENST00000363354 107 ntBASIC3.26□□□□□ -1.89
USP39Q53GS9 Y_RNA.435-201ENST00000384095 112 ntBASIC3.26□□□□□ -1.89
USP39Q53GS9 RNU6-20P-201ENST00000384106 107 ntBASIC3.26□□□□□ -1.89
USP39Q53GS9 SNORA29-201ENST00000384183 140 ntBASIC3.26□□□□□ -1.89
USP39Q53GS9 RNU6-281P-201ENST00000384212 103 ntBASIC3.26□□□□□ -1.89
USP39Q53GS9 U8.10-201ENST00000384260 133 ntBASIC3.26□□□□□ -1.89
USP39Q53GS9 RNU6-1289P-201ENST00000384431 106 ntBASIC3.26□□□□□ -1.89
USP39Q53GS9 MIR518D-201ENST00000385014 87 ntBASIC3.26□□□□□ -1.89
USP39Q53GS9 U3.37-201ENST00000408528 213 ntBASIC3.26□□□□□ -1.89
USP39Q53GS9 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC3.26□□□□□ -1.89
USP39Q53GS9 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC3.26□□□□□ -1.89
USP39Q53GS9 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.26□□□□□ -1.89
USP39Q53GS9 SNRPEP9-201ENST00000436794 238 ntBASIC3.26□□□□□ -1.89
USP39Q53GS9 AC025750.2-201ENST00000442609 450 ntBASIC3.26□□□□□ -1.89
USP39Q53GS9 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC3.26□□□□□ -1.89
USP39Q53GS9 AC074133.1-201ENST00000515696 183 ntBASIC3.26□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 10.3 ms