Protein–RNA interactions for Protein: Q15858

SCN9A, Sodium channel protein type 9 subunit alpha, humanhuman

Predictions only

Length 1,988 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9AQ15858 AL354692.1-201ENST00000423044 315 ntBASIC0.77□□□□□ -2.29
SCN9AQ15858 AC092628.1-201ENST00000436250 252 ntBASIC0.77□□□□□ -2.29
SCN9AQ15858 AC016925.1-201ENST00000458303 298 ntBASIC0.77□□□□□ -2.29
SCN9AQ15858 snoU13.9-201ENST00000458927 103 ntBASIC0.77□□□□□ -2.29
SCN9AQ15858 RNU6-498P-201ENST00000459468 107 ntBASIC0.77□□□□□ -2.29
SCN9AQ15858 AC079382.1-201ENST00000493346 557 ntBASIC0.77□□□□□ -2.29
SCN9AQ15858 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC0.77□□□□□ -2.29
SCN9AQ15858 RNU6-229P-201ENST00000516614 102 ntBASIC0.77□□□□□ -2.29
SCN9AQ15858 AC109479.2-201ENST00000517842 174 ntBASIC0.77□□□□□ -2.29
SCN9AQ15858 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC0.77□□□□□ -2.29
SCN9AQ15858 RSL24D1P11-201ENST00000591045 491 ntBASIC0.77□□□□□ -2.29
SCN9AQ15858 TCL6_2.1-201ENST00000615162 119 ntBASIC0.77□□□□□ -2.29
SCN9AQ15858 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC0.77□□□□□ -2.29
SCN9AQ15858 AC091925.1-201ENST00000623204 462 ntBASIC0.77□□□□□ -2.29
SCN9AQ15858 MIR6866-201ENST00000638146 69 ntBASIC0.77□□□□□ -2.29
SCN9AQ15858 AC099654.13-201ENST00000639774 207 ntBASIC0.77□□□□□ -2.29
SCN9AQ15858 AL159152.1-201ENST00000635019 2587 ntBASIC0.77□□□□□ -2.29
SCN9AQ15858 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.77□□□□□ -2.29
SCN9AQ15858 AC008163.1-202ENST00000636004 2889 ntBASIC0.77□□□□□ -2.29
SCN9AQ15858 MIR26B-201ENST00000362251 77 ntBASIC0.77□□□□□ -2.29
SCN9AQ15858 RNU6-500P-201ENST00000362349 107 ntBASIC0.77□□□□□ -2.29
SCN9AQ15858 Y_RNA.22-201ENST00000362492 102 ntBASIC0.77□□□□□ -2.29
SCN9AQ15858 RNU6-562P-201ENST00000362731 107 ntBASIC0.77□□□□□ -2.29
SCN9AQ15858 RNU6-1214P-201ENST00000363650 109 ntBASIC0.77□□□□□ -2.29
SCN9AQ15858 SNORD32A-201ENST00000364805 84 ntBASIC0.77□□□□□ -2.29
SCN9AQ15858 RNU5A-2P-201ENST00000384337 116 ntBASIC0.77□□□□□ -2.29
SCN9AQ15858 RPS29P13-201ENST00000402041 169 ntBASIC0.77□□□□□ -2.29
SCN9AQ15858 MTCO2P8-201ENST00000412213 658 ntBASIC0.77□□□□□ -2.29
SCN9AQ15858 AL358176.2-201ENST00000425769 204 ntBASIC0.77□□□□□ -2.29
SCN9AQ15858 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC0.77□□□□□ -2.29
SCN9AQ15858 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC0.77□□□□□ -2.29
SCN9AQ15858 RPL39P28-201ENST00000465655 155 ntBASIC0.77□□□□□ -2.29
SCN9AQ15858 SNORD116-28-201ENST00000516123 91 ntBASIC0.77□□□□□ -2.29
SCN9AQ15858 AC022616.3-201ENST00000523940 148 ntBASIC0.77□□□□□ -2.29
SCN9AQ15858 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC0.77□□□□□ -2.29
SCN9AQ15858 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC0.77□□□□□ -2.29
SCN9AQ15858 AC013244.2-201ENST00000603396 103 ntBASIC0.77□□□□□ -2.29
SCN9AQ15858 AP000811.1-201ENST00000603803 651 ntBASIC0.77□□□□□ -2.29
SCN9AQ15858 AC107304.1-201ENST00000604229 296 ntBASIC0.77□□□□□ -2.29
SCN9AQ15858 MZT1P2-201ENST00000604387 248 ntBASIC0.77□□□□□ -2.29
SCN9AQ15858 AC138749.5-201ENST00000611461 208 ntBASIC0.77□□□□□ -2.29
SCN9AQ15858 AL133173.2-201ENST00000614270 90 ntBASIC0.77□□□□□ -2.29
SCN9AQ15858 AC116165.2-201ENST00000616705 206 ntBASIC0.77□□□□□ -2.29
SCN9AQ15858 AC008147.4-201ENST00000617570 1204 ntBASIC0.77□□□□□ -2.29
SCN9AQ15858 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC0.77□□□□□ -2.29
SCN9AQ15858 HSBP1P2-201ENST00000299671 229 ntBASIC0.76□□□□□ -2.29
SCN9AQ15858 RNU6-428P-201ENST00000362942 107 ntBASIC0.76□□□□□ -2.29
SCN9AQ15858 Y_RNA.295-201ENST00000364918 102 ntBASIC0.76□□□□□ -2.29
SCN9AQ15858 MTCYBP36-201ENST00000404146 440 ntBASIC0.76□□□□□ -2.29
SCN9AQ15858 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC0.76□□□□□ -2.29
SCN9AQ15858 EIF1P1-201ENST00000421436 341 ntBASIC0.76□□□□□ -2.29
SCN9AQ15858 C8orf59P1-201ENST00000429930 303 ntBASIC0.76□□□□□ -2.29
SCN9AQ15858 MTATP6P16-201ENST00000434543 526 ntBASIC0.76□□□□□ -2.29
SCN9AQ15858 AL135790.2-201ENST00000437701 267 ntBASIC0.76□□□□□ -2.29
SCN9AQ15858 EPS15P1-201ENST00000448836 336 ntBASIC0.76□□□□□ -2.29
SCN9AQ15858 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC0.76□□□□□ -2.29
SCN9AQ15858 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC0.76□□□□□ -2.29
SCN9AQ15858 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC0.76□□□□□ -2.29
SCN9AQ15858 AC067942.3-201ENST00000512025 362 ntBASIC0.76□□□□□ -2.29
SCN9AQ15858 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC0.76□□□□□ -2.29
SCN9AQ15858 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC0.76□□□□□ -2.29
SCN9AQ15858 AC073539.2-201ENST00000597113 165 ntBASIC0.76□□□□□ -2.29
SCN9AQ15858 MIR3976-201ENST00000606807 139 ntBASIC0.76□□□□□ -2.29
SCN9AQ15858 AC009033.1-201ENST00000624279 431 ntBASIC0.76□□□□□ -2.29
SCN9AQ15858 AL589743.1-201ENST00000551932 2712 ntBASIC0.76□□□□□ -2.29
SCN9AQ15858 RNU1-96P-201ENST00000364163 162 ntBASIC0.76□□□□□ -2.29
SCN9AQ15858 MIR146A-201ENST00000385201 99 ntBASIC0.76□□□□□ -2.29
SCN9AQ15858 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC0.76□□□□□ -2.29
SCN9AQ15858 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC0.76□□□□□ -2.29
SCN9AQ15858 AL161935.2-201ENST00000414627 60 ntBASIC0.76□□□□□ -2.29
SCN9AQ15858 HIGD1AP15-201ENST00000416198 280 ntBASIC0.76□□□□□ -2.29
SCN9AQ15858 MTCYBP1-201ENST00000454315 1119 ntBASIC0.76□□□□□ -2.29
SCN9AQ15858 snoU13.30-201ENST00000458951 104 ntBASIC0.76□□□□□ -2.29
SCN9AQ15858 AC016632.1-201ENST00000503994 196 ntBASIC0.76□□□□□ -2.29
SCN9AQ15858 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC0.76□□□□□ -2.29
SCN9AQ15858 RNU6-311P-201ENST00000516224 102 ntBASIC0.76□□□□□ -2.29
SCN9AQ15858 SNORA25.17-201ENST00000517184 124 ntBASIC0.76□□□□□ -2.29
SCN9AQ15858 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC0.76□□□□□ -2.29
SCN9AQ15858 NIFKP6-201ENST00000598115 845 ntBASIC0.76□□□□□ -2.29
SCN9AQ15858 AC120349.3-201ENST00000624377 529 ntBASIC0.76□□□□□ -2.29
SCN9AQ15858 AC019226.2-201ENST00000625973 424 ntBASIC0.76□□□□□ -2.29
SCN9AQ15858 SEPT14P19-203ENST00000633205 211 ntBASIC0.76□□□□□ -2.29
SCN9AQ15858 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC0.75□□□□□ -2.29
SCN9AQ15858 RNU6-1097P-201ENST00000363586 107 ntBASIC0.75□□□□□ -2.29
SCN9AQ15858 RNU5F-7P-201ENST00000363696 115 ntBASIC0.75□□□□□ -2.29
SCN9AQ15858 RNU6-660P-201ENST00000364566 109 ntBASIC0.75□□□□□ -2.29
SCN9AQ15858 SNORA20.2-201ENST00000383922 131 ntBASIC0.75□□□□□ -2.29
SCN9AQ15858 MIR454-201ENST00000390180 115 ntBASIC0.75□□□□□ -2.29
SCN9AQ15858 RN7SKP61-201ENST00000410642 295 ntBASIC0.75□□□□□ -2.29
SCN9AQ15858 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC0.75□□□□□ -2.29
SCN9AQ15858 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC0.75□□□□□ -2.29
SCN9AQ15858 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC0.75□□□□□ -2.29
SCN9AQ15858 AL033528.1-201ENST00000453780 140 ntBASIC0.75□□□□□ -2.29
SCN9AQ15858 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC0.75□□□□□ -2.29
SCN9AQ15858 AL163195.1-201ENST00000496941 348 ntBASIC0.75□□□□□ -2.29
SCN9AQ15858 RBBP4P6-201ENST00000508098 202 ntBASIC0.75□□□□□ -2.29
SCN9AQ15858 NAF1-205ENST00000509434 385 ntTSL 3 BASIC0.75□□□□□ -2.29
SCN9AQ15858 MTATP6P9-201ENST00000515039 680 ntBASIC0.75□□□□□ -2.29
SCN9AQ15858 RNA5SP404-201ENST00000517118 132 ntBASIC0.75□□□□□ -2.29
SCN9AQ15858 RNA5SP437-201ENST00000517249 129 ntBASIC0.75□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 115.7 ms