Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 HMGB1P35-201ENST00000503360 598 ntBASIC2.51□□□□□ -2.01
SHMT1P34896 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC2.51□□□□□ -2.01
SHMT1P34896 Y_RNA.675-201ENST00000516389 149 ntBASIC2.51□□□□□ -2.01
SHMT1P34896 RNA5SP82-201ENST00000516707 92 ntBASIC2.51□□□□□ -2.01
SHMT1P34896 RNU6-307P-201ENST00000516743 106 ntBASIC2.51□□□□□ -2.01
SHMT1P34896 RNU6-567P-201ENST00000516746 107 ntBASIC2.51□□□□□ -2.01
SHMT1P34896 IGHVII-53-1-201ENST00000519538 255 ntBASIC2.51□□□□□ -2.01
SHMT1P34896 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC2.51□□□□□ -2.01
SHMT1P34896 APOOP3-201ENST00000536787 586 ntBASIC2.51□□□□□ -2.01
SHMT1P34896 MIR4795-201ENST00000584182 89 ntBASIC2.51□□□□□ -2.01
SHMT1P34896 AC005899.2-201ENST00000584353 90 ntBASIC2.51□□□□□ -2.01
SHMT1P34896 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC2.51□□□□□ -2.01
SHMT1P34896 SNORA43.4-201ENST00000629559 138 ntBASIC2.51□□□□□ -2.01
SHMT1P34896 SNORD98-201ENST00000636377 67 ntBASIC2.51□□□□□ -2.01
SHMT1P34896 MTND5P9-201ENST00000503854 1755 ntBASIC2.51□□□□□ -2.01
SHMT1P34896 AC233981.2-201ENST00000611524 1614 ntBASIC2.5□□□□□ -2.01
SHMT1P34896 Y_RNA.67-201ENST00000362870 100 ntBASIC2.5□□□□□ -2.01
SHMT1P34896 RNU6-1188P-201ENST00000363795 107 ntBASIC2.5□□□□□ -2.01
SHMT1P34896 RNU6-1286P-201ENST00000383871 107 ntBASIC2.5□□□□□ -2.01
SHMT1P34896 RNU6-968P-201ENST00000384076 107 ntBASIC2.5□□□□□ -2.01
SHMT1P34896 SNORA48.3-201ENST00000391081 134 ntBASIC2.5□□□□□ -2.01
SHMT1P34896 RNA5SP181-201ENST00000410246 98 ntBASIC2.5□□□□□ -2.01
SHMT1P34896 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.5□□□□□ -2.01
SHMT1P34896 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC2.5□□□□□ -2.01
SHMT1P34896 MTCO2P27-201ENST00000420740 428 ntBASIC2.5□□□□□ -2.01
SHMT1P34896 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
SHMT1P34896 AL445687.1-201ENST00000439946 251 ntBASIC2.5□□□□□ -2.01
SHMT1P34896 Y_RNA.632-201ENST00000459189 102 ntBASIC2.5□□□□□ -2.01
SHMT1P34896 AC107222.1-201ENST00000510899 637 ntBASIC2.5□□□□□ -2.01
SHMT1P34896 RNU1-104P-201ENST00000517280 175 ntBASIC2.5□□□□□ -2.01
SHMT1P34896 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC2.5□□□□□ -2.01
SHMT1P34896 MIR5571-201ENST00000577998 113 ntBASIC2.5□□□□□ -2.01
SHMT1P34896 MIR5696-201ENST00000578474 85 ntBASIC2.5□□□□□ -2.01
SHMT1P34896 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC2.5□□□□□ -2.01
SHMT1P34896 AL670379.2-201ENST00000604983 252 ntBASIC2.5□□□□□ -2.01
SHMT1P34896 AC009318.2-201ENST00000610917 651 ntBASIC2.5□□□□□ -2.01
SHMT1P34896 AL449363.1-201ENST00000617815 186 ntBASIC2.5□□□□□ -2.01
SHMT1P34896 AL669831.3-213ENST00000636676 183 ntBASIC2.5□□□□□ -2.01
SHMT1P34896 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.5□□□□□ -2.01
SHMT1P34896 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC2.5□□□□□ -2.01
SHMT1P34896 Y_RNA.259-201ENST00000364619 101 ntBASIC2.49□□□□□ -2.01
SHMT1P34896 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC2.49□□□□□ -2.01
SHMT1P34896 Y_RNA.473-201ENST00000384333 102 ntBASIC2.49□□□□□ -2.01
SHMT1P34896 RNU6-220P-201ENST00000390919 107 ntBASIC2.49□□□□□ -2.01
SHMT1P34896 USMG5P1-201ENST00000425964 177 ntBASIC2.49□□□□□ -2.01
SHMT1P34896 AL445646.1-201ENST00000431784 216 ntBASIC2.49□□□□□ -2.01
SHMT1P34896 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC2.49□□□□□ -2.01
SHMT1P34896 AC079354.2-201ENST00000453523 154 ntBASIC2.49□□□□□ -2.01
SHMT1P34896 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC2.49□□□□□ -2.01
SHMT1P34896 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC2.49□□□□□ -2.01
SHMT1P34896 Y_RNA.653-201ENST00000459091 95 ntBASIC2.49□□□□□ -2.01
SHMT1P34896 RPL7P42-201ENST00000481005 679 ntBASIC2.49□□□□□ -2.01
SHMT1P34896 AC005741.1-201ENST00000511094 432 ntBASIC2.49□□□□□ -2.01
SHMT1P34896 SNORA31.11-201ENST00000516528 139 ntBASIC2.49□□□□□ -2.01
SHMT1P34896 AC093027.1-201ENST00000546698 429 ntBASIC2.49□□□□□ -2.01
SHMT1P34896 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC2.49□□□□□ -2.01
SHMT1P34896 AC133104.2-201ENST00000615272 193 ntBASIC2.49□□□□□ -2.01
SHMT1P34896 MIR5739-201ENST00000619803 80 ntBASIC2.49□□□□□ -2.01
SHMT1P34896 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.49□□□□□ -2.01
SHMT1P34896 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC2.49□□□□□ -2.01
SHMT1P34896 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
SHMT1P34896 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
SHMT1P34896 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.48□□□□□ -2.01
SHMT1P34896 RNU4-79P-201ENST00000362764 141 ntBASIC2.48□□□□□ -2.01
SHMT1P34896 Y_RNA.61-201ENST00000362835 102 ntBASIC2.48□□□□□ -2.01
SHMT1P34896 AL139156.1-201ENST00000412785 841 ntBASIC2.48□□□□□ -2.01
SHMT1P34896 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC2.48□□□□□ -2.01
SHMT1P34896 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC2.48□□□□□ -2.01
SHMT1P34896 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC2.48□□□□□ -2.01
SHMT1P34896 FO393415.2-201ENST00000480085 343 ntBASIC2.48□□□□□ -2.01
SHMT1P34896 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC2.48□□□□□ -2.01
SHMT1P34896 SNORA31.16-201ENST00000516773 139 ntBASIC2.48□□□□□ -2.01
SHMT1P34896 Y_RNA.718-201ENST00000517110 102 ntBASIC2.48□□□□□ -2.01
SHMT1P34896 MRPS36P4-201ENST00000534436 298 ntBASIC2.48□□□□□ -2.01
SHMT1P34896 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC2.48□□□□□ -2.01
SHMT1P34896 MIR3923-201ENST00000579521 83 ntBASIC2.48□□□□□ -2.01
SHMT1P34896 AC090616.3-201ENST00000582184 217 ntBASIC2.48□□□□□ -2.01
SHMT1P34896 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC2.48□□□□□ -2.01
SHMT1P34896 AL034555.1-201ENST00000604816 211 ntBASIC2.48□□□□□ -2.01
SHMT1P34896 AL137847.3-201ENST00000611521 109 ntBASIC2.48□□□□□ -2.01
SHMT1P34896 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.48□□□□□ -2.01
SHMT1P34896 HMGB1P24-202ENST00000615653 685 ntBASIC2.48□□□□□ -2.01
SHMT1P34896 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
SHMT1P34896 MTND4LP32-201ENST00000636111 270 ntBASIC2.48□□□□□ -2.01
SHMT1P34896 AL450472.1-202ENST00000637286 180 ntBASIC2.48□□□□□ -2.01
SHMT1P34896 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.48□□□□□ -2.01
SHMT1P34896 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.48□□□□□ -2.01
SHMT1P34896 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
SHMT1P34896 ZNF299P-201ENST00000406845 1804 ntBASIC2.47□□□□□ -2.01
SHMT1P34896 Y_RNA.58-201ENST00000362807 102 ntBASIC2.47□□□□□ -2.01
SHMT1P34896 RNU1-72P-201ENST00000362976 153 ntBASIC2.47□□□□□ -2.01
SHMT1P34896 Y_RNA.154-201ENST00000363624 102 ntBASIC2.47□□□□□ -2.01
SHMT1P34896 SNORA67.1-201ENST00000364749 141 ntBASIC2.47□□□□□ -2.01
SHMT1P34896 RNY3P1-201ENST00000365085 102 ntBASIC2.47□□□□□ -2.01
SHMT1P34896 RNY3-201ENST00000365484 102 ntBASIC2.47□□□□□ -2.01
SHMT1P34896 Y_RNA.404-201ENST00000383978 102 ntBASIC2.47□□□□□ -2.01
SHMT1P34896 SNORA29-201ENST00000384183 140 ntBASIC2.47□□□□□ -2.01
SHMT1P34896 Y_RNA.490-201ENST00000384413 102 ntBASIC2.47□□□□□ -2.01
SHMT1P34896 RNY4P36-201ENST00000391116 96 ntBASIC2.47□□□□□ -2.01
SHMT1P34896 AC003685.2-201ENST00000422795 395 ntBASIC2.47□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 122 ms