Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 U2.5-201ENST00000619465 191 ntBASIC1.23□□□□□ -2.21
HLA-DQA1P01909 U2.10-201ENST00000620268 191 ntBASIC1.23□□□□□ -2.21
HLA-DQA1P01909 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC1.23□□□□□ -2.21
HLA-DQA1P01909 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.23□□□□□ -2.21
HLA-DQA1P01909 SNORD114-1-201ENST00000362705 72 ntBASIC1.22□□□□□ -2.21
HLA-DQA1P01909 RNU6-522P-201ENST00000364497 107 ntBASIC1.22□□□□□ -2.21
HLA-DQA1P01909 SNORD31B-201ENST00000364977 69 ntBASIC1.22□□□□□ -2.21
HLA-DQA1P01909 SNORA18.2-201ENST00000383865 132 ntBASIC1.22□□□□□ -2.21
HLA-DQA1P01909 Y_RNA.559-201ENST00000384686 107 ntBASIC1.22□□□□□ -2.21
HLA-DQA1P01909 MIR549A-201ENST00000385268 96 ntBASIC1.22□□□□□ -2.21
HLA-DQA1P01909 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC1.22□□□□□ -2.21
HLA-DQA1P01909 MIR450B-201ENST00000401182 78 ntBASIC1.22□□□□□ -2.21
HLA-DQA1P01909 RNU6-955P-201ENST00000410497 104 ntBASIC1.22□□□□□ -2.21
HLA-DQA1P01909 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC1.22□□□□□ -2.21
HLA-DQA1P01909 MRPS10P2-201ENST00000431226 381 ntBASIC1.22□□□□□ -2.21
HLA-DQA1P01909 AL645568.3-201ENST00000433683 316 ntBASIC1.22□□□□□ -2.21
HLA-DQA1P01909 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.22□□□□□ -2.21
HLA-DQA1P01909 RNU1-131P-201ENST00000458943 161 ntBASIC1.22□□□□□ -2.21
HLA-DQA1P01909 RNU1-98P-201ENST00000458992 160 ntBASIC1.22□□□□□ -2.21
HLA-DQA1P01909 FO393415.2-201ENST00000480085 343 ntBASIC1.22□□□□□ -2.21
HLA-DQA1P01909 AC023790.1-201ENST00000482174 347 ntBASIC1.22□□□□□ -2.21
HLA-DQA1P01909 AC010409.1-201ENST00000487382 476 ntBASIC1.22□□□□□ -2.21
HLA-DQA1P01909 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC1.22□□□□□ -2.21
HLA-DQA1P01909 DEFB131C-201ENST00000528817 165 ntBASIC1.22□□□□□ -2.21
HLA-DQA1P01909 AK6P1-201ENST00000540219 478 ntBASIC1.22□□□□□ -2.21
HLA-DQA1P01909 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC1.22□□□□□ -2.21
HLA-DQA1P01909 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC1.22□□□□□ -2.21
HLA-DQA1P01909 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC1.22□□□□□ -2.21
HLA-DQA1P01909 SUB1P4-201ENST00000566062 339 ntBASIC1.22□□□□□ -2.21
HLA-DQA1P01909 RMST_3.1-201ENST00000611651 109 ntBASIC1.22□□□□□ -2.21
HLA-DQA1P01909 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.22□□□□□ -2.21
HLA-DQA1P01909 AC048344.4-201ENST00000619744 527 ntBASIC1.22□□□□□ -2.21
HLA-DQA1P01909 AC073534.2-201ENST00000620377 381 ntBASIC1.22□□□□□ -2.21
HLA-DQA1P01909 FER-210ENST00000628534 558 ntTSL 5 BASIC1.22□□□□□ -2.21
HLA-DQA1P01909 AL356292.1-201ENST00000283110 373 ntBASIC1.21□□□□□ -2.22
HLA-DQA1P01909 CBX3P1-201ENST00000325243 554 ntBASIC1.21□□□□□ -2.22
HLA-DQA1P01909 RNU6-545P-201ENST00000362681 104 ntBASIC1.21□□□□□ -2.22
HLA-DQA1P01909 Y_RNA.123-201ENST00000363338 102 ntBASIC1.21□□□□□ -2.22
HLA-DQA1P01909 Y_RNA.194-201ENST00000363985 102 ntBASIC1.21□□□□□ -2.22
HLA-DQA1P01909 Y_RNA.231-201ENST00000364358 102 ntBASIC1.21□□□□□ -2.22
HLA-DQA1P01909 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.21□□□□□ -2.22
HLA-DQA1P01909 SNORA40.18-201ENST00000391200 128 ntBASIC1.21□□□□□ -2.22
HLA-DQA1P01909 EIF4E2P1-201ENST00000393781 255 ntBASIC1.21□□□□□ -2.22
HLA-DQA1P01909 AL079342.1-201ENST00000401460 267 ntBASIC1.21□□□□□ -2.22
HLA-DQA1P01909 Y_RNA.615-201ENST00000410769 117 ntBASIC1.21□□□□□ -2.22
HLA-DQA1P01909 RNU6-325P-201ENST00000411132 105 ntBASIC1.21□□□□□ -2.22
HLA-DQA1P01909 AC007098.1-201ENST00000420122 367 ntBASIC1.21□□□□□ -2.22
HLA-DQA1P01909 MTCO3P46-201ENST00000425787 232 ntBASIC1.21□□□□□ -2.22
HLA-DQA1P01909 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC1.21□□□□□ -2.22
HLA-DQA1P01909 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC1.21□□□□□ -2.22
HLA-DQA1P01909 MTCO1P44-201ENST00000441935 243 ntBASIC1.21□□□□□ -2.22
HLA-DQA1P01909 RPS23P5-201ENST00000495419 428 ntBASIC1.21□□□□□ -2.22
HLA-DQA1P01909 AC097473.1-201ENST00000508142 408 ntBASIC1.21□□□□□ -2.22
HLA-DQA1P01909 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC1.21□□□□□ -2.22
HLA-DQA1P01909 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC1.21□□□□□ -2.22
HLA-DQA1P01909 AC024909.2-201ENST00000553035 286 ntBASIC1.21□□□□□ -2.22
HLA-DQA1P01909 SNORA59B-202ENST00000578183 701 ntBASIC1.21□□□□□ -2.22
HLA-DQA1P01909 CPDP1-201ENST00000579660 283 ntBASIC1.21□□□□□ -2.22
HLA-DQA1P01909 AC010525.2-201ENST00000590920 195 ntBASIC1.21□□□□□ -2.22
HLA-DQA1P01909 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC1.21□□□□□ -2.22
HLA-DQA1P01909 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC1.21□□□□□ -2.22
HLA-DQA1P01909 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.21□□□□□ -2.22
HLA-DQA1P01909 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC1.21□□□□□ -2.22
HLA-DQA1P01909 OR4G1P-203ENST00000641984 1631 ntBASIC1.21□□□□□ -2.22
HLA-DQA1P01909 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC1.21□□□□□ -2.22
HLA-DQA1P01909 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC1.2□□□□□ -2.22
HLA-DQA1P01909 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.2□□□□□ -2.22
HLA-DQA1P01909 Y_RNA.38-201ENST00000362617 102 ntBASIC1.2□□□□□ -2.22
HLA-DQA1P01909 RNU1-76P-201ENST00000362903 159 ntBASIC1.2□□□□□ -2.22
HLA-DQA1P01909 RNU5B-2P-201ENST00000363036 113 ntBASIC1.2□□□□□ -2.22
HLA-DQA1P01909 Y_RNA.373-201ENST00000365600 103 ntBASIC1.2□□□□□ -2.22
HLA-DQA1P01909 RNU6-439P-201ENST00000384188 106 ntBASIC1.2□□□□□ -2.22
HLA-DQA1P01909 Y_RNA.517-201ENST00000384551 106 ntBASIC1.2□□□□□ -2.22
HLA-DQA1P01909 MIR320A-201ENST00000385302 82 ntBASIC1.2□□□□□ -2.22
HLA-DQA1P01909 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC1.2□□□□□ -2.22
HLA-DQA1P01909 RNU6-908P-201ENST00000410160 94 ntBASIC1.2□□□□□ -2.22
HLA-DQA1P01909 RN7SKP101-201ENST00000411376 320 ntBASIC1.2□□□□□ -2.22
HLA-DQA1P01909 AC016907.1-201ENST00000419483 435 ntBASIC1.2□□□□□ -2.22
HLA-DQA1P01909 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC1.2□□□□□ -2.22
HLA-DQA1P01909 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC1.2□□□□□ -2.22
HLA-DQA1P01909 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC1.2□□□□□ -2.22
HLA-DQA1P01909 AC016925.1-201ENST00000458303 298 ntBASIC1.2□□□□□ -2.22
HLA-DQA1P01909 U8.21-201ENST00000459536 136 ntBASIC1.2□□□□□ -2.22
HLA-DQA1P01909 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.2□□□□□ -2.22
HLA-DQA1P01909 AC091435.1-201ENST00000505442 584 ntBASIC1.2□□□□□ -2.22
HLA-DQA1P01909 RNU6-1281P-201ENST00000516223 105 ntBASIC1.2□□□□□ -2.22
HLA-DQA1P01909 SNORA31.17-201ENST00000516953 127 ntBASIC1.2□□□□□ -2.22
HLA-DQA1P01909 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.2□□□□□ -2.22
HLA-DQA1P01909 IGHVII-53-1-201ENST00000519538 255 ntBASIC1.2□□□□□ -2.22
HLA-DQA1P01909 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.2□□□□□ -2.22
HLA-DQA1P01909 MIR5094-201ENST00000578766 85 ntBASIC1.2□□□□□ -2.22
HLA-DQA1P01909 AC005786.1-201ENST00000588553 154 ntBASIC1.2□□□□□ -2.22
HLA-DQA1P01909 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC1.2□□□□□ -2.22
HLA-DQA1P01909 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC1.2□□□□□ -2.22
HLA-DQA1P01909 AC016727.2-201ENST00000603988 621 ntBASIC1.2□□□□□ -2.22
HLA-DQA1P01909 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC1.2□□□□□ -2.22
HLA-DQA1P01909 AC104458.1-201ENST00000608243 463 ntBASIC1.2□□□□□ -2.22
HLA-DQA1P01909 AF250324.2-201ENST00000608299 610 ntBASIC1.2□□□□□ -2.22
HLA-DQA1P01909 AL136221.1-201ENST00000621449 509 ntBASIC1.2□□□□□ -2.22
HLA-DQA1P01909 AC084768.2-201ENST00000622736 221 ntBASIC1.2□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 99.9 ms