Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC0.26□□□□□ -2.37
HMGB3O15347 AC092423.1-201ENST00000430165 186 ntBASIC0.26□□□□□ -2.37
HMGB3O15347 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC0.26□□□□□ -2.37
HMGB3O15347 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC0.26□□□□□ -2.37
HMGB3O15347 RNU6-498P-201ENST00000459468 107 ntBASIC0.26□□□□□ -2.37
HMGB3O15347 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC0.26□□□□□ -2.37
HMGB3O15347 RNU6-948P-201ENST00000516374 107 ntBASIC0.26□□□□□ -2.37
HMGB3O15347 RNU6-567P-201ENST00000516746 107 ntBASIC0.26□□□□□ -2.37
HMGB3O15347 RNA5SP337-201ENST00000517007 109 ntBASIC0.26□□□□□ -2.37
HMGB3O15347 AC109479.2-201ENST00000517842 174 ntBASIC0.26□□□□□ -2.37
HMGB3O15347 AC010376.1-201ENST00000522101 334 ntBASIC0.26□□□□□ -2.37
HMGB3O15347 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC0.26□□□□□ -2.37
HMGB3O15347 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC0.26□□□□□ -2.37
HMGB3O15347 AC064807.4-201ENST00000607201 407 ntBASIC0.26□□□□□ -2.37
HMGB3O15347 AC093913.1-201ENST00000614178 329 ntBASIC0.26□□□□□ -2.37
HMGB3O15347 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC0.26□□□□□ -2.37
HMGB3O15347 RNU4-76P-201ENST00000364509 141 ntBASIC0.25□□□□□ -2.37
HMGB3O15347 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC0.25□□□□□ -2.37
HMGB3O15347 RNU6-1237P-201ENST00000384777 107 ntBASIC0.25□□□□□ -2.37
HMGB3O15347 RNA5SP467-201ENST00000391274 118 ntBASIC0.25□□□□□ -2.37
HMGB3O15347 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC0.25□□□□□ -2.37
HMGB3O15347 SNAP23P1-201ENST00000433229 246 ntBASIC0.25□□□□□ -2.37
HMGB3O15347 AC092628.1-201ENST00000436250 252 ntBASIC0.25□□□□□ -2.37
HMGB3O15347 AL133217.1-201ENST00000450980 425 ntBASIC0.25□□□□□ -2.37
HMGB3O15347 AC233266.1-201ENST00000454518 96 ntBASIC0.25□□□□□ -2.37
HMGB3O15347 SNRPFP3-201ENST00000457792 225 ntBASIC0.25□□□□□ -2.37
HMGB3O15347 AL049830.1-201ENST00000468034 425 ntBASIC0.25□□□□□ -2.37
HMGB3O15347 AC016632.1-201ENST00000503994 196 ntBASIC0.25□□□□□ -2.37
HMGB3O15347 HMGB1P29-201ENST00000505659 499 ntBASIC0.25□□□□□ -2.37
HMGB3O15347 RN7SKP12-201ENST00000516275 143 ntBASIC0.25□□□□□ -2.37
HMGB3O15347 RNA5SP134-201ENST00000516492 96 ntBASIC0.25□□□□□ -2.37
HMGB3O15347 RNU6-685P-201ENST00000517088 95 ntBASIC0.25□□□□□ -2.37
HMGB3O15347 AC090049.2-201ENST00000550377 109 ntBASIC0.25□□□□□ -2.37
HMGB3O15347 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC0.25□□□□□ -2.37
HMGB3O15347 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC0.25□□□□□ -2.37
HMGB3O15347 MIR4781-201ENST00000585250 76 ntBASIC0.25□□□□□ -2.37
HMGB3O15347 Z83818.1-201ENST00000603584 150 ntBASIC0.25□□□□□ -2.37
HMGB3O15347 AL360219.1-201ENST00000610230 366 ntBASIC0.25□□□□□ -2.37
HMGB3O15347 AC242852.1-201ENST00000612151 96 ntBASIC0.25□□□□□ -2.37
HMGB3O15347 PART1_2.1-201ENST00000612397 250 ntBASIC0.25□□□□□ -2.37
HMGB3O15347 MIR8054-201ENST00000620877 86 ntBASIC0.25□□□□□ -2.37
HMGB3O15347 AC244015.1-201ENST00000622301 99 ntBASIC0.25□□□□□ -2.37
HMGB3O15347 AL603839.4-201ENST00000624658 1005 ntBASIC0.25□□□□□ -2.37
HMGB3O15347 RNU6-37P-201ENST00000362692 107 ntBASIC0.24□□□□□ -2.37
HMGB3O15347 RNU6-11P-201ENST00000364234 107 ntBASIC0.24□□□□□ -2.37
HMGB3O15347 RNU6-61P-201ENST00000365528 109 ntBASIC0.24□□□□□ -2.37
HMGB3O15347 RNU6-25P-201ENST00000383873 107 ntBASIC0.24□□□□□ -2.37
HMGB3O15347 RNU6-1-201ENST00000383898 107 ntBASIC0.24□□□□□ -2.37
HMGB3O15347 RNU6-48P-201ENST00000384161 107 ntBASIC0.24□□□□□ -2.37
HMGB3O15347 RNU6-36P-201ENST00000384172 107 ntBASIC0.24□□□□□ -2.37
HMGB3O15347 RNU6-4P-201ENST00000384205 107 ntBASIC0.24□□□□□ -2.37
HMGB3O15347 RNU6-5P-201ENST00000384238 107 ntBASIC0.24□□□□□ -2.37
HMGB3O15347 RNU6-3P-201ENST00000384314 107 ntBASIC0.24□□□□□ -2.37
HMGB3O15347 RNU6-16P-201ENST00000384385 107 ntBASIC0.24□□□□□ -2.37
HMGB3O15347 SNORD116-13-201ENST00000384408 92 ntBASIC0.24□□□□□ -2.37
HMGB3O15347 RNU6-15P-201ENST00000384534 107 ntBASIC0.24□□□□□ -2.37
HMGB3O15347 RNU6-2-201ENST00000384627 107 ntBASIC0.24□□□□□ -2.37
HMGB3O15347 RNU6-29P-201ENST00000384637 107 ntBASIC0.24□□□□□ -2.37
HMGB3O15347 RNU6-417P-201ENST00000384712 107 ntBASIC0.24□□□□□ -2.37
HMGB3O15347 RNU6-9-201ENST00000384776 107 ntBASIC0.24□□□□□ -2.37
HMGB3O15347 RNU6-33P-201ENST00000384793 107 ntBASIC0.24□□□□□ -2.37
HMGB3O15347 SNORA12.1-201ENST00000390873 148 ntBASIC0.24□□□□□ -2.37
HMGB3O15347 SNORA75.2-201ENST00000391138 150 ntBASIC0.24□□□□□ -2.37
HMGB3O15347 SNORA75.3-201ENST00000391231 150 ntBASIC0.24□□□□□ -2.37
HMGB3O15347 RPS29P13-201ENST00000402041 169 ntBASIC0.24□□□□□ -2.37
HMGB3O15347 SNORD99-201ENST00000408612 74 ntBASIC0.24□□□□□ -2.37
HMGB3O15347 Y_RNA.595-201ENST00000410403 105 ntBASIC0.24□□□□□ -2.37
HMGB3O15347 MTCO2P12-201ENST00000427426 682 ntBASIC0.24□□□□□ -2.37
HMGB3O15347 TIMM9P3-201ENST00000428659 274 ntBASIC0.24□□□□□ -2.37
HMGB3O15347 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC0.24□□□□□ -2.37
HMGB3O15347 AC117522.1-201ENST00000509821 380 ntBASIC0.24□□□□□ -2.37
HMGB3O15347 TRMT112P2-201ENST00000512910 132 ntBASIC0.24□□□□□ -2.37
HMGB3O15347 RNU6-947P-201ENST00000516264 106 ntBASIC0.24□□□□□ -2.37
HMGB3O15347 RNA5SP102-201ENST00000516865 106 ntBASIC0.24□□□□□ -2.37
HMGB3O15347 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC0.24□□□□□ -2.37
HMGB3O15347 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC0.24□□□□□ -2.37
HMGB3O15347 AC022217.4-201ENST00000604389 163 ntBASIC0.24□□□□□ -2.37
HMGB3O15347 Z99289.3-201ENST00000605586 594 ntBASIC0.24□□□□□ -2.37
HMGB3O15347 RNU6-6P-201ENST00000606623 107 ntBASIC0.24□□□□□ -2.37
HMGB3O15347 AC104458.1-201ENST00000608243 463 ntBASIC0.24□□□□□ -2.37
HMGB3O15347 AP000484.1-201ENST00000620067 1252 ntBASIC0.24□□□□□ -2.37
HMGB3O15347 MIR6516-201ENST00000630554 81 ntBASIC0.24□□□□□ -2.37
HMGB3O15347 RNU6-428P-201ENST00000362942 107 ntBASIC0.23□□□□□ -2.37
HMGB3O15347 Y_RNA.324-201ENST00000365165 102 ntBASIC0.23□□□□□ -2.37
HMGB3O15347 RNU6-975P-201ENST00000384296 105 ntBASIC0.23□□□□□ -2.37
HMGB3O15347 RNU6-39P-201ENST00000384344 107 ntBASIC0.23□□□□□ -2.37
HMGB3O15347 RNU6-163P-201ENST00000384396 106 ntBASIC0.23□□□□□ -2.37
HMGB3O15347 RNU6-1257P-201ENST00000384625 110 ntBASIC0.23□□□□□ -2.37
HMGB3O15347 MIR660-201ENST00000385235 97 ntBASIC0.23□□□□□ -2.37
HMGB3O15347 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.23□□□□□ -2.37
HMGB3O15347 SNORA16.2-201ENST00000390991 127 ntBASIC0.23□□□□□ -2.37
HMGB3O15347 RNU1-119P-201ENST00000391122 165 ntBASIC0.23□□□□□ -2.37
HMGB3O15347 RNA5SP299-201ENST00000391203 116 ntBASIC0.23□□□□□ -2.37
HMGB3O15347 NFU1P2-201ENST00000448700 469 ntBASIC0.23□□□□□ -2.37
HMGB3O15347 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC0.23□□□□□ -2.37
HMGB3O15347 NAF1-205ENST00000509434 385 ntTSL 3 BASIC0.23□□□□□ -2.37
HMGB3O15347 SNORA70.12-201ENST00000516084 153 ntBASIC0.23□□□□□ -2.37
HMGB3O15347 AC025627.3-201ENST00000582078 182 ntBASIC0.23□□□□□ -2.37
HMGB3O15347 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC0.23□□□□□ -2.37
HMGB3O15347 AC013244.3-201ENST00000605614 388 ntBASIC0.23□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 99.5 ms