Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 Y_RNA.64-201ENST00000362845 102 ntBASIC3.26□□□□□ -1.89
CBX4O00257 SNORA80A-201ENST00000363922 136 ntBASIC3.26□□□□□ -1.89
CBX4O00257 Y_RNA.461-201ENST00000384263 103 ntBASIC3.26□□□□□ -1.89
CBX4O00257 MIR329-1-201ENST00000385028 80 ntBASIC3.26□□□□□ -1.89
CBX4O00257 SNORA46.1-201ENST00000391069 153 ntBASIC3.26□□□□□ -1.89
CBX4O00257 Y_RNA.595-201ENST00000410403 105 ntBASIC3.26□□□□□ -1.89
CBX4O00257 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC3.26□□□□□ -1.89
CBX4O00257 PCNPP5-201ENST00000452246 481 ntBASIC3.26□□□□□ -1.89
CBX4O00257 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC3.26□□□□□ -1.89
CBX4O00257 AC073901.1-201ENST00000462471 408 ntBASIC3.26□□□□□ -1.89
CBX4O00257 AC010401.1-201ENST00000463867 348 ntBASIC3.26□□□□□ -1.89
CBX4O00257 AC103975.1-201ENST00000482506 483 ntBASIC3.26□□□□□ -1.89
CBX4O00257 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC3.26□□□□□ -1.89
CBX4O00257 CYCSP23-201ENST00000519781 313 ntBASIC3.26□□□□□ -1.89
CBX4O00257 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC3.26□□□□□ -1.89
CBX4O00257 AC093331.1-201ENST00000521474 169 ntBASIC3.26□□□□□ -1.89
CBX4O00257 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC3.26□□□□□ -1.89
CBX4O00257 AC023824.2-201ENST00000566185 400 ntBASIC3.26□□□□□ -1.89
CBX4O00257 MIR3671-201ENST00000580455 88 ntBASIC3.26□□□□□ -1.89
CBX4O00257 AC006006.1-201ENST00000603082 144 ntBASIC3.26□□□□□ -1.89
CBX4O00257 uc_338.25-201ENST00000613756 156 ntBASIC3.26□□□□□ -1.89
CBX4O00257 CENPF-206ENST00000614578 528 ntTSL 5 BASIC3.26□□□□□ -1.89
CBX4O00257 AC011476.5-201ENST00000615594 130 ntBASIC3.26□□□□□ -1.89
CBX4O00257 AC090517.3-201ENST00000625170 141 ntBASIC3.26□□□□□ -1.89
CBX4O00257 MIR7157-201ENST00000635801 60 ntBASIC3.26□□□□□ -1.89
CBX4O00257 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
CBX4O00257 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
CBX4O00257 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
CBX4O00257 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
CBX4O00257 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
CBX4O00257 AC010329.5-201ENST00000623497 2174 ntBASIC3.25□□□□□ -1.89
CBX4O00257 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
CBX4O00257 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.25□□□□□ -1.89
CBX4O00257 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.25□□□□□ -1.89
CBX4O00257 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.25□□□□□ -1.89
CBX4O00257 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.25□□□□□ -1.89
CBX4O00257 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.25□□□□□ -1.89
CBX4O00257 Y_RNA.179-201ENST00000363844 90 ntBASIC3.25□□□□□ -1.89
CBX4O00257 Y_RNA.222-201ENST00000364264 102 ntBASIC3.25□□□□□ -1.89
CBX4O00257 RNU6-505P-201ENST00000384427 107 ntBASIC3.25□□□□□ -1.89
CBX4O00257 MIR29B2-201ENST00000385055 81 ntBASIC3.25□□□□□ -1.89
CBX4O00257 AL079342.1-201ENST00000401460 267 ntBASIC3.25□□□□□ -1.89
CBX4O00257 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.25□□□□□ -1.89
CBX4O00257 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.25□□□□□ -1.89
CBX4O00257 LINC01399-202ENST00000458450 244 ntBASIC3.25□□□□□ -1.89
CBX4O00257 AC140059.1-201ENST00000489238 361 ntBASIC3.25□□□□□ -1.89
CBX4O00257 Y_RNA.683-201ENST00000516508 93 ntBASIC3.25□□□□□ -1.89
CBX4O00257 AP003733.2-201ENST00000529409 171 ntBASIC3.25□□□□□ -1.89
CBX4O00257 MIR4513-201ENST00000581077 86 ntBASIC3.25□□□□□ -1.89
CBX4O00257 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC3.25□□□□□ -1.89
CBX4O00257 AC078899.3-201ENST00000599065 212 ntBASIC3.25□□□□□ -1.89
CBX4O00257 AL133393.1-201ENST00000603277 287 ntBASIC3.25□□□□□ -1.89
CBX4O00257 MIR376A1-201ENST00000616574 68 ntBASIC3.25□□□□□ -1.89
CBX4O00257 AL079305.1-201ENST00000623159 3008 ntBASIC3.25□□□□□ -1.89
CBX4O00257 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.25□□□□□ -1.89
CBX4O00257 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
CBX4O00257 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
CBX4O00257 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.24□□□□□ -1.89
CBX4O00257 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
CBX4O00257 LINC02555-201ENST00000563933 1951 ntBASIC3.24□□□□□ -1.89
CBX4O00257 MIR422A-201ENST00000362286 90 ntBASIC3.24□□□□□ -1.89
CBX4O00257 Y_RNA.143-201ENST00000363520 106 ntBASIC3.24□□□□□ -1.89
CBX4O00257 Y_RNA.288-201ENST00000364854 92 ntBASIC3.24□□□□□ -1.89
CBX4O00257 RNU6-806P-201ENST00000365147 105 ntBASIC3.24□□□□□ -1.89
CBX4O00257 RNU6-793P-201ENST00000384233 104 ntBASIC3.24□□□□□ -1.89
CBX4O00257 RNU6-1145P-201ENST00000384246 107 ntBASIC3.24□□□□□ -1.89
CBX4O00257 MICF-203ENST00000432679 129 ntBASIC3.24□□□□□ -1.89
CBX4O00257 AC010095.1-201ENST00000443543 144 ntBASIC3.24□□□□□ -1.89
CBX4O00257 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC3.24□□□□□ -1.89
CBX4O00257 AC022080.3-201ENST00000544433 482 ntBASIC3.24□□□□□ -1.89
CBX4O00257 AC018692.3-201ENST00000623929 123 ntBASIC3.24□□□□□ -1.89
CBX4O00257 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.24□□□□□ -1.89
CBX4O00257 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC3.23□□□□□ -1.89
CBX4O00257 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
CBX4O00257 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC3.23□□□□□ -1.89
CBX4O00257 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.23□□□□□ -1.89
CBX4O00257 RNU1-62P-201ENST00000362599 164 ntBASIC3.23□□□□□ -1.89
CBX4O00257 SNORA18.3-201ENST00000384122 132 ntBASIC3.23□□□□□ -1.89
CBX4O00257 MIR549A-201ENST00000385268 96 ntBASIC3.23□□□□□ -1.89
CBX4O00257 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC3.23□□□□□ -1.89
CBX4O00257 AL353705.1-201ENST00000433468 480 ntBASIC3.23□□□□□ -1.89
CBX4O00257 RN7SL442P-201ENST00000473804 320 ntBASIC3.23□□□□□ -1.89
CBX4O00257 AC025465.3-201ENST00000510570 311 ntBASIC3.23□□□□□ -1.89
CBX4O00257 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.23□□□□□ -1.89
CBX4O00257 HSPE1P18-201ENST00000517602 280 ntBASIC3.23□□□□□ -1.89
CBX4O00257 AC107871.2-201ENST00000612894 502 ntBASIC3.23□□□□□ -1.89
CBX4O00257 AC005562.2-201ENST00000618264 111 ntBASIC3.23□□□□□ -1.89
CBX4O00257 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.23□□□□□ -1.89
CBX4O00257 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
CBX4O00257 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
CBX4O00257 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.23□□□□□ -1.89
CBX4O00257 MTND5P35-201ENST00000557537 1720 ntBASIC3.22□□□□□ -1.89
CBX4O00257 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
CBX4O00257 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
CBX4O00257 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
CBX4O00257 RNU1-75P-201ENST00000347264 129 ntBASIC3.22□□□□□ -1.89
CBX4O00257 Y_RNA.26-201ENST00000362539 101 ntBASIC3.22□□□□□ -1.89
CBX4O00257 SNORA68.1-201ENST00000364537 132 ntBASIC3.22□□□□□ -1.89
CBX4O00257 Y_RNA.396-201ENST00000383949 103 ntBASIC3.22□□□□□ -1.89
CBX4O00257 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC3.22□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 101.7 ms