Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
USP3Q9Y6I4 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.13□□□□□ -1.75
USP3Q9Y6I4 AL513302.2-201ENST00000562313 1842 ntBASIC4.12□□□□□ -1.75
USP3Q9Y6I4 AC002546.1-201ENST00000588041 2504 ntBASIC4.12□□□□□ -1.75
USP3Q9Y6I4 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
USP3Q9Y6I4 AC069285.2-201ENST00000440210 275 ntBASIC4.12□□□□□ -1.75
USP3Q9Y6I4 RPL30P14-201ENST00000482744 348 ntBASIC4.12□□□□□ -1.75
USP3Q9Y6I4 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC4.12□□□□□ -1.75
USP3Q9Y6I4 GNRHR2P1-201ENST00000555315 631 ntBASIC4.12□□□□□ -1.75
USP3Q9Y6I4 HSPE1P7-201ENST00000604681 321 ntBASIC4.12□□□□□ -1.75
USP3Q9Y6I4 AL138880.2-201ENST00000616214 239 ntBASIC4.12□□□□□ -1.75
USP3Q9Y6I4 AC002076.2-201ENST00000617362 122 ntBASIC4.12□□□□□ -1.75
USP3Q9Y6I4 HOTTIP_4.1-201ENST00000618195 165 ntBASIC4.12□□□□□ -1.75
USP3Q9Y6I4 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
USP3Q9Y6I4 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.12□□□□□ -1.75
USP3Q9Y6I4 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC4.12□□□□□ -1.75
USP3Q9Y6I4 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
USP3Q9Y6I4 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC4.12□□□□□ -1.75
USP3Q9Y6I4 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC4.12□□□□□ -1.75
USP3Q9Y6I4 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
USP3Q9Y6I4 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
USP3Q9Y6I4 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
USP3Q9Y6I4 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
USP3Q9Y6I4 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
USP3Q9Y6I4 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC4.11□□□□□ -1.75
USP3Q9Y6I4 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
USP3Q9Y6I4 U1.1-201ENST00000384101 164 ntBASIC4.11□□□□□ -1.75
USP3Q9Y6I4 Y_RNA.521-201ENST00000384560 114 ntBASIC4.11□□□□□ -1.75
USP3Q9Y6I4 Y_RNA.572-201ENST00000384757 98 ntBASIC4.11□□□□□ -1.75
USP3Q9Y6I4 MIR586-201ENST00000385035 97 ntBASIC4.11□□□□□ -1.75
USP3Q9Y6I4 SNORA75.5-201ENST00000391291 81 ntBASIC4.11□□□□□ -1.75
USP3Q9Y6I4 RPL23AP48-201ENST00000406913 488 ntBASIC4.11□□□□□ -1.75
USP3Q9Y6I4 AL591034.1-201ENST00000407447 340 ntBASIC4.11□□□□□ -1.75
USP3Q9Y6I4 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC4.11□□□□□ -1.75
USP3Q9Y6I4 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC4.11□□□□□ -1.75
USP3Q9Y6I4 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.11□□□□□ -1.75
USP3Q9Y6I4 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
USP3Q9Y6I4 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.1□□□□□ -1.75
USP3Q9Y6I4 AC010889.1-201ENST00000566193 2666 ntBASIC4.1□□□□□ -1.75
USP3Q9Y6I4 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.1□□□□□ -1.75
USP3Q9Y6I4 RNU1-57P-201ENST00000384491 166 ntBASIC4.1□□□□□ -1.75
USP3Q9Y6I4 MIR199A2-201ENST00000385289 110 ntBASIC4.1□□□□□ -1.75
USP3Q9Y6I4 RN7SKP177-201ENST00000410567 355 ntBASIC4.1□□□□□ -1.75
USP3Q9Y6I4 RPS29P7-201ENST00000439662 171 ntBASIC4.1□□□□□ -1.75
USP3Q9Y6I4 HSPE1P13-201ENST00000451143 297 ntBASIC4.1□□□□□ -1.75
USP3Q9Y6I4 AC092991.1-201ENST00000477176 376 ntBASIC4.1□□□□□ -1.75
USP3Q9Y6I4 AC090049.2-201ENST00000550377 109 ntBASIC4.1□□□□□ -1.75
USP3Q9Y6I4 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC4.1□□□□□ -1.75
USP3Q9Y6I4 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC4.1□□□□□ -1.75
USP3Q9Y6I4 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC4.1□□□□□ -1.75
USP3Q9Y6I4 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC4.1□□□□□ -1.75
USP3Q9Y6I4 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.1□□□□□ -1.75
USP3Q9Y6I4 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC4.1□□□□□ -1.75
USP3Q9Y6I4 AL136164.4-201ENST00000625013 2135 ntBASIC4.1□□□□□ -1.75
USP3Q9Y6I4 IL33-202ENST00000417746 2327 ntTSL 2 BASIC4.1□□□□□ -1.75
USP3Q9Y6I4 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
USP3Q9Y6I4 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
USP3Q9Y6I4 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
USP3Q9Y6I4 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.75
USP3Q9Y6I4 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
USP3Q9Y6I4 UBE3AP2-201ENST00000429033 2259 ntBASIC4.09□□□□□ -1.75
USP3Q9Y6I4 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
USP3Q9Y6I4 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.75
USP3Q9Y6I4 RNU6-750P-201ENST00000390946 107 ntBASIC4.09□□□□□ -1.75
USP3Q9Y6I4 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC4.09□□□□□ -1.75
USP3Q9Y6I4 HMGN2P16-201ENST00000456802 261 ntBASIC4.09□□□□□ -1.75
USP3Q9Y6I4 PPIAP15-201ENST00000479662 484 ntBASIC4.09□□□□□ -1.75
USP3Q9Y6I4 VWA8P1-201ENST00000510889 176 ntBASIC4.09□□□□□ -1.75
USP3Q9Y6I4 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC4.09□□□□□ -1.75
USP3Q9Y6I4 CYCSP30-201ENST00000546447 172 ntBASIC4.09□□□□□ -1.75
USP3Q9Y6I4 AC099778.2-201ENST00000610904 211 ntBASIC4.09□□□□□ -1.75
USP3Q9Y6I4 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
USP3Q9Y6I4 MIR548AY-201ENST00000617669 107 ntBASIC4.09□□□□□ -1.75
USP3Q9Y6I4 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
USP3Q9Y6I4 AL133412.1-201ENST00000380194 2992 ntBASIC4.09□□□□□ -1.75
USP3Q9Y6I4 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
USP3Q9Y6I4 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.76
USP3Q9Y6I4 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC4.09□□□□□ -1.76
USP3Q9Y6I4 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
USP3Q9Y6I4 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
USP3Q9Y6I4 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
USP3Q9Y6I4 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
USP3Q9Y6I4 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC4.08□□□□□ -1.76
USP3Q9Y6I4 RNA5SP97-201ENST00000365006 84 ntBASIC4.08□□□□□ -1.76
USP3Q9Y6I4 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC4.08□□□□□ -1.76
USP3Q9Y6I4 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
USP3Q9Y6I4 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
USP3Q9Y6I4 AL133475.1-201ENST00000404414 305 ntBASIC4.08□□□□□ -1.76
USP3Q9Y6I4 SNORA79-201ENST00000408376 140 ntBASIC4.08□□□□□ -1.76
USP3Q9Y6I4 SNORA3.3-201ENST00000408712 125 ntBASIC4.08□□□□□ -1.76
USP3Q9Y6I4 RNU6-1064P-201ENST00000410626 104 ntBASIC4.08□□□□□ -1.76
USP3Q9Y6I4 HSPE1P21-201ENST00000438283 308 ntBASIC4.08□□□□□ -1.76
USP3Q9Y6I4 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC4.08□□□□□ -1.76
USP3Q9Y6I4 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC4.08□□□□□ -1.76
USP3Q9Y6I4 RPS4XP2-201ENST00000458402 793 ntBASIC4.08□□□□□ -1.76
USP3Q9Y6I4 RN7SL323P-201ENST00000494712 295 ntBASIC4.08□□□□□ -1.76
USP3Q9Y6I4 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC4.08□□□□□ -1.76
USP3Q9Y6I4 SCARNA14-201ENST00000516903 136 ntBASIC4.08□□□□□ -1.76
USP3Q9Y6I4 CENPCP1-201ENST00000533085 2578 ntBASIC4.08□□□□□ -1.76
USP3Q9Y6I4 CYCSP26-201ENST00000534107 320 ntBASIC4.08□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 113.3 ms