Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 SNORA11.1-201ENST00000408133 129 ntBASIC4.43□□□□□ -1.7
CHMP3Q9Y3E7 BPY2DP-201ENST00000422208 265 ntBASIC4.43□□□□□ -1.7
CHMP3Q9Y3E7 AC006199.1-201ENST00000548728 219 ntBASIC4.43□□□□□ -1.7
CHMP3Q9Y3E7 AC007179.3-201ENST00000604976 235 ntBASIC4.43□□□□□ -1.7
CHMP3Q9Y3E7 MIR7975-201ENST00000619350 68 ntBASIC4.43□□□□□ -1.7
CHMP3Q9Y3E7 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
CHMP3Q9Y3E7 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
CHMP3Q9Y3E7 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC4.42□□□□□ -1.7
CHMP3Q9Y3E7 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC4.42□□□□□ -1.7
CHMP3Q9Y3E7 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
CHMP3Q9Y3E7 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
CHMP3Q9Y3E7 SNORD6-201ENST00000365444 73 ntBASIC4.42□□□□□ -1.7
CHMP3Q9Y3E7 RNU6-793P-201ENST00000384233 104 ntBASIC4.42□□□□□ -1.7
CHMP3Q9Y3E7 RNVU1-14-201ENST00000384770 164 ntBASIC4.42□□□□□ -1.7
CHMP3Q9Y3E7 Y_RNA.580-201ENST00000391004 95 ntBASIC4.42□□□□□ -1.7
CHMP3Q9Y3E7 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC4.42□□□□□ -1.7
CHMP3Q9Y3E7 AC012308.1-201ENST00000451232 178 ntBASIC4.42□□□□□ -1.7
CHMP3Q9Y3E7 RNA5SP468-201ENST00000516782 93 ntBASIC4.42□□□□□ -1.7
CHMP3Q9Y3E7 POC1B-211ENST00000549504 581 ntTSL 5 BASIC4.42□□□□□ -1.7
CHMP3Q9Y3E7 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC4.42□□□□□ -1.7
CHMP3Q9Y3E7 MIR3690-201ENST00000580266 75 ntBASIC4.42□□□□□ -1.7
CHMP3Q9Y3E7 MIR7851-201ENST00000610611 160 ntBASIC4.42□□□□□ -1.7
CHMP3Q9Y3E7 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC4.42□□□□□ -1.7
CHMP3Q9Y3E7 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC4.42□□□□□ -1.7
CHMP3Q9Y3E7 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
CHMP3Q9Y3E7 AC073073.2-201ENST00000609827 2578 ntBASIC4.42□□□□□ -1.7
CHMP3Q9Y3E7 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
CHMP3Q9Y3E7 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC4.41□□□□□ -1.7
CHMP3Q9Y3E7 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC4.41□□□□□ -1.7
CHMP3Q9Y3E7 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC4.41□□□□□ -1.7
CHMP3Q9Y3E7 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC4.41□□□□□ -1.7
CHMP3Q9Y3E7 RNU6-1290P-201ENST00000362957 109 ntBASIC4.41□□□□□ -1.7
CHMP3Q9Y3E7 Y_RNA.412-201ENST00000384001 104 ntBASIC4.41□□□□□ -1.7
CHMP3Q9Y3E7 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC4.41□□□□□ -1.7
CHMP3Q9Y3E7 RPL23AP62-201ENST00000463396 453 ntBASIC4.41□□□□□ -1.7
CHMP3Q9Y3E7 AC007215.1-201ENST00000464893 276 ntBASIC4.41□□□□□ -1.7
CHMP3Q9Y3E7 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC4.41□□□□□ -1.7
CHMP3Q9Y3E7 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC4.41□□□□□ -1.7
CHMP3Q9Y3E7 RNU5F-8P-201ENST00000515941 111 ntBASIC4.41□□□□□ -1.7
CHMP3Q9Y3E7 RN7SKP83-201ENST00000516512 178 ntBASIC4.41□□□□□ -1.7
CHMP3Q9Y3E7 AP003355.3-201ENST00000623465 114 ntBASIC4.41□□□□□ -1.7
CHMP3Q9Y3E7 AC099654.7-201ENST00000635788 2127 ntBASIC4.41□□□□□ -1.7
CHMP3Q9Y3E7 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC4.41□□□□□ -1.7
CHMP3Q9Y3E7 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
CHMP3Q9Y3E7 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC4.41□□□□□ -1.7
CHMP3Q9Y3E7 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC4.41□□□□□ -1.7
CHMP3Q9Y3E7 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
CHMP3Q9Y3E7 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC4.4□□□□□ -1.7
CHMP3Q9Y3E7 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
CHMP3Q9Y3E7 Y_RNA.497-201ENST00000384447 98 ntBASIC4.4□□□□□ -1.71
CHMP3Q9Y3E7 RNU2-51P-201ENST00000410708 197 ntBASIC4.4□□□□□ -1.71
CHMP3Q9Y3E7 RN7SKP53-201ENST00000411337 315 ntBASIC4.4□□□□□ -1.71
CHMP3Q9Y3E7 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC4.4□□□□□ -1.71
CHMP3Q9Y3E7 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC4.4□□□□□ -1.71
CHMP3Q9Y3E7 HMGN2P15-201ENST00000585707 270 ntBASIC4.4□□□□□ -1.71
CHMP3Q9Y3E7 AL133393.1-201ENST00000603277 287 ntBASIC4.4□□□□□ -1.71
CHMP3Q9Y3E7 AC096577.2-201ENST00000611455 153 ntBASIC4.4□□□□□ -1.71
CHMP3Q9Y3E7 TEX41-243ENST00000614173 190 ntTSL 5 BASIC4.4□□□□□ -1.71
CHMP3Q9Y3E7 MTND1P7-201ENST00000632801 297 ntBASIC4.4□□□□□ -1.71
CHMP3Q9Y3E7 SNORD98-201ENST00000636377 67 ntBASIC4.4□□□□□ -1.71
CHMP3Q9Y3E7 DLD-214ENST00000639772 421 ntTSL 5 BASIC4.4□□□□□ -1.71
CHMP3Q9Y3E7 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
CHMP3Q9Y3E7 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
CHMP3Q9Y3E7 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC4.39□□□□□ -1.71
CHMP3Q9Y3E7 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
CHMP3Q9Y3E7 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
CHMP3Q9Y3E7 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
CHMP3Q9Y3E7 Y_RNA.238-201ENST00000364441 102 ntBASIC4.39□□□□□ -1.71
CHMP3Q9Y3E7 Y_RNA.329-201ENST00000365209 107 ntBASIC4.39□□□□□ -1.71
CHMP3Q9Y3E7 RNU6-22P-201ENST00000384355 107 ntBASIC4.39□□□□□ -1.71
CHMP3Q9Y3E7 AL133475.1-201ENST00000404414 305 ntBASIC4.39□□□□□ -1.71
CHMP3Q9Y3E7 RNU2-54P-201ENST00000410299 190 ntBASIC4.39□□□□□ -1.71
CHMP3Q9Y3E7 SEPT7P4-201ENST00000437076 306 ntBASIC4.39□□□□□ -1.71
CHMP3Q9Y3E7 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC4.39□□□□□ -1.71
CHMP3Q9Y3E7 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC4.39□□□□□ -1.71
CHMP3Q9Y3E7 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC4.39□□□□□ -1.71
CHMP3Q9Y3E7 U3.44-201ENST00000458938 192 ntBASIC4.39□□□□□ -1.71
CHMP3Q9Y3E7 Y_RNA.637-201ENST00000459424 114 ntBASIC4.39□□□□□ -1.71
CHMP3Q9Y3E7 AC103975.1-201ENST00000482506 483 ntBASIC4.39□□□□□ -1.71
CHMP3Q9Y3E7 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC4.39□□□□□ -1.71
CHMP3Q9Y3E7 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC4.39□□□□□ -1.71
CHMP3Q9Y3E7 RNA5SP272-201ENST00000516095 111 ntBASIC4.39□□□□□ -1.71
CHMP3Q9Y3E7 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
CHMP3Q9Y3E7 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC4.39□□□□□ -1.71
CHMP3Q9Y3E7 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
CHMP3Q9Y3E7 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
CHMP3Q9Y3E7 Y_RNA.7-201ENST00000362352 102 ntBASIC4.38□□□□□ -1.71
CHMP3Q9Y3E7 RNU6-959P-201ENST00000384671 107 ntBASIC4.38□□□□□ -1.71
CHMP3Q9Y3E7 SNORD17-201ENST00000390930 237 ntBASIC4.38□□□□□ -1.71
CHMP3Q9Y3E7 EI24P2-201ENST00000397776 1076 ntBASIC4.38□□□□□ -1.71
CHMP3Q9Y3E7 MIR208B-201ENST00000401172 77 ntBASIC4.38□□□□□ -1.71
CHMP3Q9Y3E7 AL138878.1-201ENST00000405131 347 ntBASIC4.38□□□□□ -1.71
CHMP3Q9Y3E7 RNA5SP390-201ENST00000410191 113 ntBASIC4.38□□□□□ -1.71
CHMP3Q9Y3E7 AC009963.1-201ENST00000417265 157 ntBASIC4.38□□□□□ -1.71
CHMP3Q9Y3E7 AC008155.2-201ENST00000464337 397 ntBASIC4.38□□□□□ -1.71
CHMP3Q9Y3E7 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC4.38□□□□□ -1.71
CHMP3Q9Y3E7 NACAP3-201ENST00000552100 481 ntBASIC4.38□□□□□ -1.71
CHMP3Q9Y3E7 AL110115.1-201ENST00000614396 364 ntBASIC4.38□□□□□ -1.71
CHMP3Q9Y3E7 MIR3674-201ENST00000636576 68 ntBASIC4.38□□□□□ -1.71
CHMP3Q9Y3E7 FAM35BP-202ENST00000497389 3337 ntBASIC4.38□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 106.9 ms