Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 AC092436.3-201ENST00000511788 257 ntBASIC1.9□□□□□ -2.11
VPS54Q9P1Q0 RNU2-44P-201ENST00000516795 194 ntBASIC1.9□□□□□ -2.11
VPS54Q9P1Q0 CBX3P4-201ENST00000538909 354 ntBASIC1.9□□□□□ -2.11
VPS54Q9P1Q0 AL356157.2-201ENST00000605122 111 ntBASIC1.9□□□□□ -2.11
VPS54Q9P1Q0 AC068137.3-201ENST00000639191 341 ntBASIC1.9□□□□□ -2.11
VPS54Q9P1Q0 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC1.9□□□□□ -2.11
VPS54Q9P1Q0 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
VPS54Q9P1Q0 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
VPS54Q9P1Q0 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC1.89□□□□□ -2.11
VPS54Q9P1Q0 RNU6-522P-201ENST00000364497 107 ntBASIC1.89□□□□□ -2.11
VPS54Q9P1Q0 Y_RNA.373-201ENST00000365600 103 ntBASIC1.89□□□□□ -2.11
VPS54Q9P1Q0 EIF4E2P1-201ENST00000393781 255 ntBASIC1.89□□□□□ -2.11
VPS54Q9P1Q0 AL356432.1-201ENST00000405809 419 ntBASIC1.89□□□□□ -2.11
VPS54Q9P1Q0 AP000275.1-201ENST00000411943 390 ntBASIC1.89□□□□□ -2.11
VPS54Q9P1Q0 SRIP3-201ENST00000413200 219 ntBASIC1.89□□□□□ -2.11
VPS54Q9P1Q0 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC1.89□□□□□ -2.11
VPS54Q9P1Q0 BX510359.4-201ENST00000423750 193 ntBASIC1.89□□□□□ -2.11
VPS54Q9P1Q0 C8orf59P1-201ENST00000429930 303 ntBASIC1.89□□□□□ -2.11
VPS54Q9P1Q0 ERLEC1P1-201ENST00000433806 578 ntBASIC1.89□□□□□ -2.11
VPS54Q9P1Q0 AC245102.2-201ENST00000448956 180 ntBASIC1.89□□□□□ -2.11
VPS54Q9P1Q0 RPL9P9-202ENST00000466501 579 ntBASIC1.89□□□□□ -2.11
VPS54Q9P1Q0 AC016632.1-201ENST00000503994 196 ntBASIC1.89□□□□□ -2.11
VPS54Q9P1Q0 AC093259.1-201ENST00000509755 300 ntBASIC1.89□□□□□ -2.11
VPS54Q9P1Q0 RNU6-991P-201ENST00000516168 107 ntBASIC1.89□□□□□ -2.11
VPS54Q9P1Q0 SNORD60.2-201ENST00000516883 86 ntBASIC1.89□□□□□ -2.11
VPS54Q9P1Q0 RNU6-612P-201ENST00000516909 102 ntBASIC1.89□□□□□ -2.11
VPS54Q9P1Q0 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC1.89□□□□□ -2.11
VPS54Q9P1Q0 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC1.89□□□□□ -2.11
VPS54Q9P1Q0 AC109446.1-201ENST00000566172 220 ntBASIC1.89□□□□□ -2.11
VPS54Q9P1Q0 MIR4299-201ENST00000577899 72 ntBASIC1.89□□□□□ -2.11
VPS54Q9P1Q0 MIR3923-201ENST00000579521 83 ntBASIC1.89□□□□□ -2.11
VPS54Q9P1Q0 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.89□□□□□ -2.11
VPS54Q9P1Q0 DISC2.1-201ENST00000612827 205 ntBASIC1.89□□□□□ -2.11
VPS54Q9P1Q0 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC1.89□□□□□ -2.11
VPS54Q9P1Q0 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC1.89□□□□□ -2.11
VPS54Q9P1Q0 SNORA43.4-201ENST00000629559 138 ntBASIC1.89□□□□□ -2.11
VPS54Q9P1Q0 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC1.89□□□□□ -2.11
VPS54Q9P1Q0 AC092268.1-201ENST00000342691 405 ntBASIC1.88□□□□□ -2.11
VPS54Q9P1Q0 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC1.88□□□□□ -2.11
VPS54Q9P1Q0 SNORD14D-201ENST00000384390 87 ntBASIC1.88□□□□□ -2.11
VPS54Q9P1Q0 MIR29C-201ENST00000385231 88 ntBASIC1.88□□□□□ -2.11
VPS54Q9P1Q0 MIR450B-201ENST00000401182 78 ntBASIC1.88□□□□□ -2.11
VPS54Q9P1Q0 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.88□□□□□ -2.11
VPS54Q9P1Q0 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC1.88□□□□□ -2.11
VPS54Q9P1Q0 ARL5AP1-201ENST00000418991 388 ntBASIC1.88□□□□□ -2.11
VPS54Q9P1Q0 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.88□□□□□ -2.11
VPS54Q9P1Q0 MTND3P9-201ENST00000429526 346 ntBASIC1.88□□□□□ -2.11
VPS54Q9P1Q0 MRPS10P2-201ENST00000431226 381 ntBASIC1.88□□□□□ -2.11
VPS54Q9P1Q0 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC1.88□□□□□ -2.11
VPS54Q9P1Q0 RPL23AP6-201ENST00000446637 472 ntBASIC1.88□□□□□ -2.11
VPS54Q9P1Q0 AMD1P1-201ENST00000457220 922 ntBASIC1.88□□□□□ -2.11
VPS54Q9P1Q0 AC008628.2-201ENST00000502605 298 ntBASIC1.88□□□□□ -2.11
VPS54Q9P1Q0 AC025465.4-201ENST00000513422 638 ntBASIC1.88□□□□□ -2.11
VPS54Q9P1Q0 RNU6-1332P-201ENST00000516666 104 ntBASIC1.88□□□□□ -2.11
VPS54Q9P1Q0 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC1.88□□□□□ -2.11
VPS54Q9P1Q0 AL157687.1-201ENST00000554853 619 ntBASIC1.88□□□□□ -2.11
VPS54Q9P1Q0 MIR3683-201ENST00000580847 82 ntBASIC1.88□□□□□ -2.11
VPS54Q9P1Q0 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC1.88□□□□□ -2.11
VPS54Q9P1Q0 BNIP3P25-201ENST00000596023 559 ntBASIC1.88□□□□□ -2.11
VPS54Q9P1Q0 AC243960.4-201ENST00000600532 288 ntBASIC1.88□□□□□ -2.11
VPS54Q9P1Q0 AC012557.2-201ENST00000605919 418 ntBASIC1.88□□□□□ -2.11
VPS54Q9P1Q0 MIR502-201ENST00000606349 86 ntBASIC1.88□□□□□ -2.11
VPS54Q9P1Q0 AC025754.2-201ENST00000606491 432 ntBASIC1.88□□□□□ -2.11
VPS54Q9P1Q0 MIR6715A-201ENST00000615929 79 ntBASIC1.88□□□□□ -2.11
VPS54Q9P1Q0 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC1.88□□□□□ -2.11
VPS54Q9P1Q0 MIR1321-201ENST00000637766 79 ntBASIC1.88□□□□□ -2.11
VPS54Q9P1Q0 AC009541.1-201ENST00000438279 2662 ntBASIC1.88□□□□□ -2.11
VPS54Q9P1Q0 RNU6-1317P-201ENST00000364582 104 ntBASIC1.87□□□□□ -2.11
VPS54Q9P1Q0 RNU4-56P-201ENST00000364700 142 ntBASIC1.87□□□□□ -2.11
VPS54Q9P1Q0 RNA5SP190-201ENST00000365222 118 ntBASIC1.87□□□□□ -2.11
VPS54Q9P1Q0 RNU6-378P-201ENST00000384324 107 ntBASIC1.87□□□□□ -2.11
VPS54Q9P1Q0 Y_RNA.554-201ENST00000384672 102 ntBASIC1.87□□□□□ -2.11
VPS54Q9P1Q0 RNU11-3P-201ENST00000391111 133 ntBASIC1.87□□□□□ -2.11
VPS54Q9P1Q0 SNORA26.3-201ENST00000391119 136 ntBASIC1.87□□□□□ -2.11
VPS54Q9P1Q0 MTCYBP2-201ENST00000407745 171 ntBASIC1.87□□□□□ -2.11
VPS54Q9P1Q0 MIR1283-2-201ENST00000408621 87 ntBASIC1.87□□□□□ -2.11
VPS54Q9P1Q0 RN7SKP101-201ENST00000411376 320 ntBASIC1.87□□□□□ -2.11
VPS54Q9P1Q0 MTCO1P20-201ENST00000425366 358 ntBASIC1.87□□□□□ -2.11
VPS54Q9P1Q0 AL359672.1-201ENST00000442302 409 ntBASIC1.87□□□□□ -2.11
VPS54Q9P1Q0 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC1.87□□□□□ -2.11
VPS54Q9P1Q0 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC1.87□□□□□ -2.11
VPS54Q9P1Q0 HMGN2P23-201ENST00000456759 269 ntBASIC1.87□□□□□ -2.11
VPS54Q9P1Q0 SNORD13-201ENST00000459299 104 ntBASIC1.87□□□□□ -2.11
VPS54Q9P1Q0 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC1.87□□□□□ -2.11
VPS54Q9P1Q0 AP005660.1-201ENST00000522972 293 ntBASIC1.87□□□□□ -2.11
VPS54Q9P1Q0 AC016957.1-201ENST00000534895 309 ntBASIC1.87□□□□□ -2.11
VPS54Q9P1Q0 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.87□□□□□ -2.11
VPS54Q9P1Q0 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC1.87□□□□□ -2.11
VPS54Q9P1Q0 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC1.87□□□□□ -2.11
VPS54Q9P1Q0 MIR4255-201ENST00000579351 72 ntBASIC1.87□□□□□ -2.11
VPS54Q9P1Q0 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC1.87□□□□□ -2.11
VPS54Q9P1Q0 AC104984.5-201ENST00000586878 94 ntBASIC1.87□□□□□ -2.11
VPS54Q9P1Q0 Z98751.3-201ENST00000604447 521 ntBASIC1.87□□□□□ -2.11
VPS54Q9P1Q0 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC1.87□□□□□ -2.11
VPS54Q9P1Q0 PCGEM1.1-201ENST00000613431 131 ntBASIC1.87□□□□□ -2.11
VPS54Q9P1Q0 FAM157A-202ENST00000615155 405 ntBASIC1.87□□□□□ -2.11
VPS54Q9P1Q0 MIR7843-201ENST00000622274 79 ntBASIC1.87□□□□□ -2.11
VPS54Q9P1Q0 FER-210ENST00000628534 558 ntTSL 5 BASIC1.87□□□□□ -2.11
VPS54Q9P1Q0 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
VPS54Q9P1Q0 AC121333.1-201ENST00000567488 2709 ntBASIC1.86□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 106.2 ms