Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 TEX41-243ENST00000614173 190 ntTSL 5 BASIC4.25□□□□□ -1.73
CCDC87Q9NVE4 AL137790.1-201ENST00000634283 177 ntBASIC4.25□□□□□ -1.73
CCDC87Q9NVE4 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC4.25□□□□□ -1.73
CCDC87Q9NVE4 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC4.25□□□□□ -1.73
CCDC87Q9NVE4 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
CCDC87Q9NVE4 AC010680.1-201ENST00000590024 3590 ntBASIC4.24□□□□□ -1.73
CCDC87Q9NVE4 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC4.24□□□□□ -1.73
CCDC87Q9NVE4 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
CCDC87Q9NVE4 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
CCDC87Q9NVE4 Y_RNA.136-201ENST00000363444 102 ntBASIC4.24□□□□□ -1.73
CCDC87Q9NVE4 Y_RNA.179-201ENST00000363844 90 ntBASIC4.24□□□□□ -1.73
CCDC87Q9NVE4 RNU6-961P-201ENST00000363893 105 ntBASIC4.24□□□□□ -1.73
CCDC87Q9NVE4 RNU6-283P-201ENST00000364788 107 ntBASIC4.24□□□□□ -1.73
CCDC87Q9NVE4 RNU6-886P-201ENST00000384319 105 ntBASIC4.24□□□□□ -1.73
CCDC87Q9NVE4 RNU6-378P-201ENST00000384324 107 ntBASIC4.24□□□□□ -1.73
CCDC87Q9NVE4 SNORA46.1-201ENST00000391069 153 ntBASIC4.24□□□□□ -1.73
CCDC87Q9NVE4 AC096649.2-201ENST00000416186 393 ntBASIC4.24□□□□□ -1.73
CCDC87Q9NVE4 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC4.24□□□□□ -1.73
CCDC87Q9NVE4 AC010095.1-201ENST00000443543 144 ntBASIC4.24□□□□□ -1.73
CCDC87Q9NVE4 SNORA25.14-201ENST00000516481 132 ntBASIC4.24□□□□□ -1.73
CCDC87Q9NVE4 CBX3P4-201ENST00000538909 354 ntBASIC4.24□□□□□ -1.73
CCDC87Q9NVE4 AC008749.1-201ENST00000597650 306 ntBASIC4.24□□□□□ -1.73
CCDC87Q9NVE4 Z83818.1-201ENST00000603584 150 ntBASIC4.24□□□□□ -1.73
CCDC87Q9NVE4 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC4.24□□□□□ -1.73
CCDC87Q9NVE4 AC006001.4-201ENST00000622243 395 ntBASIC4.24□□□□□ -1.73
CCDC87Q9NVE4 SNORD98-201ENST00000636377 67 ntBASIC4.24□□□□□ -1.73
CCDC87Q9NVE4 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC4.24□□□□□ -1.73
CCDC87Q9NVE4 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
CCDC87Q9NVE4 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC4.24□□□□□ -1.73
CCDC87Q9NVE4 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC4.24□□□□□ -1.73
CCDC87Q9NVE4 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
CCDC87Q9NVE4 MIR410-201ENST00000362222 80 ntBASIC4.23□□□□□ -1.73
CCDC87Q9NVE4 MIR411-201ENST00000362239 96 ntBASIC4.23□□□□□ -1.73
CCDC87Q9NVE4 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC4.23□□□□□ -1.73
CCDC87Q9NVE4 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC4.23□□□□□ -1.73
CCDC87Q9NVE4 AC010099.1-201ENST00000455434 375 ntBASIC4.23□□□□□ -1.73
CCDC87Q9NVE4 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC4.23□□□□□ -1.73
CCDC87Q9NVE4 SNORA31.16-201ENST00000516773 139 ntBASIC4.23□□□□□ -1.73
CCDC87Q9NVE4 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC4.23□□□□□ -1.73
CCDC87Q9NVE4 MIR3923-201ENST00000579521 83 ntBASIC4.23□□□□□ -1.73
CCDC87Q9NVE4 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC4.23□□□□□ -1.73
CCDC87Q9NVE4 AL590240.4-201ENST00000616908 390 ntBASIC4.23□□□□□ -1.73
CCDC87Q9NVE4 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC4.23□□□□□ -1.73
CCDC87Q9NVE4 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC4.23□□□□□ -1.73
CCDC87Q9NVE4 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
CCDC87Q9NVE4 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC87Q9NVE4 MTND5P35-201ENST00000557537 1720 ntBASIC4.22□□□□□ -1.73
CCDC87Q9NVE4 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC4.22□□□□□ -1.73
CCDC87Q9NVE4 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC4.22□□□□□ -1.73
CCDC87Q9NVE4 AC008725.1-201ENST00000605123 2263 ntBASIC4.22□□□□□ -1.73
CCDC87Q9NVE4 UBE2WP1-201ENST00000362030 340 ntBASIC4.22□□□□□ -1.73
CCDC87Q9NVE4 RNU6-1010P-201ENST00000362757 107 ntBASIC4.22□□□□□ -1.73
CCDC87Q9NVE4 Y_RNA.76-201ENST00000362931 109 ntBASIC4.22□□□□□ -1.73
CCDC87Q9NVE4 Y_RNA.275-201ENST00000364726 110 ntBASIC4.22□□□□□ -1.73
CCDC87Q9NVE4 Y_RNA.331-201ENST00000365267 102 ntBASIC4.22□□□□□ -1.73
CCDC87Q9NVE4 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC87Q9NVE4 RNU6-198P-201ENST00000384258 104 ntBASIC4.22□□□□□ -1.73
CCDC87Q9NVE4 AL353705.1-201ENST00000433468 480 ntBASIC4.22□□□□□ -1.73
CCDC87Q9NVE4 POLR2KP2-201ENST00000438155 177 ntBASIC4.22□□□□□ -1.73
CCDC87Q9NVE4 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC4.22□□□□□ -1.73
CCDC87Q9NVE4 RNU7-120P-201ENST00000459334 63 ntBASIC4.22□□□□□ -1.73
CCDC87Q9NVE4 RN7SL863P-201ENST00000462370 296 ntBASIC4.22□□□□□ -1.73
CCDC87Q9NVE4 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC4.22□□□□□ -1.73
CCDC87Q9NVE4 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC4.22□□□□□ -1.73
CCDC87Q9NVE4 SNRPGP20-201ENST00000604477 205 ntBASIC4.22□□□□□ -1.73
CCDC87Q9NVE4 AC022149.2-201ENST00000621061 203 ntBASIC4.22□□□□□ -1.73
CCDC87Q9NVE4 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC87Q9NVE4 ZNF204P-201ENST00000416749 2397 ntBASIC4.21□□□□□ -1.73
CCDC87Q9NVE4 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC4.21□□□□□ -1.74
CCDC87Q9NVE4 AC099654.7-201ENST00000635788 2127 ntBASIC4.21□□□□□ -1.74
CCDC87Q9NVE4 RNU1-62P-201ENST00000362599 164 ntBASIC4.21□□□□□ -1.74
CCDC87Q9NVE4 Y_RNA.82-201ENST00000363000 102 ntBASIC4.21□□□□□ -1.74
CCDC87Q9NVE4 Y_RNA.92-201ENST00000363043 102 ntBASIC4.21□□□□□ -1.74
CCDC87Q9NVE4 RNU1-18P-201ENST00000363062 164 ntBASIC4.21□□□□□ -1.74
CCDC87Q9NVE4 Y_RNA.122-201ENST00000363331 96 ntBASIC4.21□□□□□ -1.74
CCDC87Q9NVE4 Y_RNA.150-201ENST00000363562 102 ntBASIC4.21□□□□□ -1.74
CCDC87Q9NVE4 Y_RNA.235-201ENST00000364412 102 ntBASIC4.21□□□□□ -1.74
CCDC87Q9NVE4 RNU6-740P-201ENST00000364734 105 ntBASIC4.21□□□□□ -1.74
CCDC87Q9NVE4 Y_RNA.306-201ENST00000365015 102 ntBASIC4.21□□□□□ -1.74
CCDC87Q9NVE4 Y_RNA.312-201ENST00000365089 102 ntBASIC4.21□□□□□ -1.74
CCDC87Q9NVE4 Y_RNA.322-201ENST00000365151 102 ntBASIC4.21□□□□□ -1.74
CCDC87Q9NVE4 RNY4P28-201ENST00000365281 93 ntBASIC4.21□□□□□ -1.74
CCDC87Q9NVE4 RNU6-1310P-201ENST00000384153 107 ntBASIC4.21□□□□□ -1.74
CCDC87Q9NVE4 RNU6-793P-201ENST00000384233 104 ntBASIC4.21□□□□□ -1.74
CCDC87Q9NVE4 Y_RNA.464-201ENST00000384282 110 ntBASIC4.21□□□□□ -1.74
CCDC87Q9NVE4 AC005042.3-201ENST00000453230 174 ntBASIC4.21□□□□□ -1.74
CCDC87Q9NVE4 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC4.21□□□□□ -1.74
CCDC87Q9NVE4 Y_RNA.650-201ENST00000459002 102 ntBASIC4.21□□□□□ -1.74
CCDC87Q9NVE4 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC4.21□□□□□ -1.74
CCDC87Q9NVE4 Y_RNA.777-201ENST00000516982 102 ntBASIC4.21□□□□□ -1.74
CCDC87Q9NVE4 AP000867.2-201ENST00000532468 320 ntBASIC4.21□□□□□ -1.74
CCDC87Q9NVE4 RPS15AP11-201ENST00000594193 385 ntBASIC4.21□□□□□ -1.74
CCDC87Q9NVE4 Y_RNA.771-201ENST00000598668 102 ntBASIC4.21□□□□□ -1.74
CCDC87Q9NVE4 AC022441.3-201ENST00000605737 136 ntBASIC4.21□□□□□ -1.74
CCDC87Q9NVE4 RNVU1-4-201ENST00000612985 164 ntBASIC4.21□□□□□ -1.74
CCDC87Q9NVE4 Y_RNA.789-201ENST00000622480 102 ntBASIC4.21□□□□□ -1.74
CCDC87Q9NVE4 IGHVIII-44-202ENST00000636235 289 ntBASIC4.21□□□□□ -1.74
CCDC87Q9NVE4 AF127577.6-201ENST00000623352 2191 ntBASIC4.21□□□□□ -1.74
CCDC87Q9NVE4 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC4.21□□□□□ -1.74
CCDC87Q9NVE4 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC4.21□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 108.9 ms